EnumeratorDistribUnknown | |
DistribNSUndeclared | |
DistribElementNotInNs | |
+DistribMathnumber | |
DistribDuplicateComponentId | |
DistribIdSyntaxRule | |
+DistribUnitsRule | |
DistribAttributeRequiredMissing | |
DistribAttributeRequiredMustBeBoolean | |
DistribAttributeRequiredMustHaveValue | |
diff --git a/_distrib_s_b_m_l_error_8h.js b/_distrib_s_b_m_l_error_8h.js
index f3d42a2d6..a0c973e98 100644
--- a/_distrib_s_b_m_l_error_8h.js
+++ b/_distrib_s_b_m_l_error_8h.js
@@ -4,8 +4,10 @@ var _distrib_s_b_m_l_error_8h =
[ "DistribUnknown", "_distrib_s_b_m_l_error_8h.html#a3f01efa5b633ed9d896c5a024e202ec9ada59ca9247ef8928fd7bb137154dc483", null ],
[ "DistribNSUndeclared", "_distrib_s_b_m_l_error_8h.html#a3f01efa5b633ed9d896c5a024e202ec9a1c025e3a68e8fd854955a8d77c8e785d", null ],
[ "DistribElementNotInNs", "_distrib_s_b_m_l_error_8h.html#a3f01efa5b633ed9d896c5a024e202ec9adfa2116d3dd1c0157c8a72116e82a901", null ],
+ [ "DistribMathnumber", "_distrib_s_b_m_l_error_8h.html#a3f01efa5b633ed9d896c5a024e202ec9a6fd5f628f007d7fd018c63d2cd84c7c2", null ],
[ "DistribDuplicateComponentId", "_distrib_s_b_m_l_error_8h.html#a3f01efa5b633ed9d896c5a024e202ec9a21fafd4d90d3865ca4b2faed6e177082", null ],
[ "DistribIdSyntaxRule", "_distrib_s_b_m_l_error_8h.html#a3f01efa5b633ed9d896c5a024e202ec9a8eea9618dc2747097e40b610966581e4", null ],
+ [ "DistribUnitsRule", "_distrib_s_b_m_l_error_8h.html#a3f01efa5b633ed9d896c5a024e202ec9addb3555b41c5b1f18ca7b2c463687e92", null ],
[ "DistribAttributeRequiredMissing", "_distrib_s_b_m_l_error_8h.html#a3f01efa5b633ed9d896c5a024e202ec9a25b340e2096b4d566706b3e1a12d907c", null ],
[ "DistribAttributeRequiredMustBeBoolean", "_distrib_s_b_m_l_error_8h.html#a3f01efa5b633ed9d896c5a024e202ec9a867c4d2c9010925357eacf6e91bbcb4f", null ],
[ "DistribAttributeRequiredMustHaveValue", "_distrib_s_b_m_l_error_8h.html#a3f01efa5b633ed9d896c5a024e202ec9a47950a61266c592246cdc4eda0553c91", null ],
diff --git a/_distrib_unit_consistency_validator_8cpp.html b/_distrib_unit_consistency_validator_8cpp.html
new file mode 100644
index 000000000..ac04510af
--- /dev/null
+++ b/_distrib_unit_consistency_validator_8cpp.html
@@ -0,0 +1,110 @@
+
+
+
+
+
+
+
+libSBML C++ API: DistribUnitConsistencyValidator.cpp File Reference
+
+
+
+
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+
+
+
+
+
+
+
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+
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+
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+ libSBML C++ API
+ 5.20.4
+
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diff --git a/_distrib_unit_consistency_validator_8h.html b/_distrib_unit_consistency_validator_8h.html
new file mode 100644
index 000000000..d6499052d
--- /dev/null
+++ b/_distrib_unit_consistency_validator_8h.html
@@ -0,0 +1,115 @@
+
+
+
+
+
+
+
+libSBML C++ API: DistribUnitConsistencyValidator.h File Reference
+
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+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
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+ libSBML C++ API
+ 5.20.4
+
+ |
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
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new file mode 100644
index 000000000..02d410320
--- /dev/null
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@@ -0,0 +1,4 @@
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new file mode 100644
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diff --git a/dir_000031_000033.html b/dir_000031_000033.html
index 0da1c4a56..e87872a3c 100644
--- a/dir_000031_000033.html
+++ b/dir_000031_000033.html
@@ -90,7 +90,7 @@
-
extension → validator Relation
+extension → validator Relation
diff --git a/dir_a5f115cb95c3e5f9e4c1a9f0f6e79c1a.html b/dir_a5f115cb95c3e5f9e4c1a9f0f6e79c1a.html
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@@ -110,12 +110,20 @@
|
file | DistribIdentifierConsistencyValidator.h |
|
+file | DistribMathMLConsistencyValidator.cpp |
+ |
+file | DistribMathMLConsistencyValidator.h |
+ |
file | DistribSBMLError.h |
| Definition of the DistribSBMLError class.
|
|
file | DistribSBMLErrorTable.h |
| Definition of the DistribSBMLErrorTable class.
|
|
+file | DistribUnitConsistencyValidator.cpp |
+ |
+file | DistribUnitConsistencyValidator.h |
+ |
file | DistribValidator.cpp |
| Definition of DistribValidator.
|
|
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@@ -233,754 +233,758 @@
distribfwd.h | Definition of distribfwd |
DistribIdentifierConsistencyValidator.cpp | |
DistribIdentifierConsistencyValidator.h | |
- DistribSBasePlugin.cpp | Implementation of the DistribSBasePlugin class |
- DistribSBasePlugin.h | Definition of the DistribSBasePlugin class |
- DistribSBMLDocumentPlugin.cpp | Implementation of the DistribSBMLDocumentPlugin class |
- DistribSBMLDocumentPlugin.h | Definition of the DistribSBMLDocumentPlugin class |
- DistribSBMLError.h | Definition of the DistribSBMLError class |
- DistribSBMLErrorTable.h | Definition of the DistribSBMLErrorTable class |
- DistribValidator.cpp | Definition of DistribValidator |
- DistribValidator.h | Definition of DistribValidator |
- Domain.cpp | Implementation of the Domain class |
- Domain.h | Definition of the Domain class |
- DomainType.cpp | Implementation of the DomainType class |
- DomainType.h | Definition of the DomainType class |
- ElementFilter.cpp | |
- ElementFilter.h | Base class of element filters |
- Ellipse.cpp | Implementation of the Ellipse class |
- Ellipse.h | Definition of the Ellipse class |
- Event.cpp | Implementations of Event and ListOfEvents |
- Event.h | Definitions of Event and ListOfEvents |
- EventAssignment.cpp | Implementation of EventAssignment |
- EventAssignment.h | Definition of EventAssignment and ListOfEventAssignments |
- ExpatAttributes.cpp | |
- ExpatAttributes.h | |
- ExpatHandler.cpp | |
- ExpatHandler.h | |
- ExpatParser.cpp | |
- ExpatParser.h | |
- ExpectedAttributes.cpp | Implementation of ExpectedAttributes, the class allowing the specification of attributes to expect |
- ExpectedAttributes.h | Definition of ExpectedAttributes, the class allowing the specification of attributes to expect |
- ExpressionAnalyser.cpp | Implementation of ExpressionAnalyser |
- ExpressionAnalyser.h | Definition of ExpressionAnalyser, a class for analysing expressions |
- extern.h | Definitions of LIBSBML_EXTERN and related things |
- ExternalModelDefinition.cpp | Implementation of ExternalModelDefinition, the SBase-derived class of the comp package |
- ExternalModelDefinition.h | Definition of ExternalModelDefinition, the SBase derived class of the comp package |
- FbcAnd.cpp | Implementation of the FbcAnd class |
- FbcAnd.h | Implementation of the FbcAnd class |
- FbcAssociation.cpp | Implementation of the FbcAssociation class |
- FbcAssociation.h | Implementation of the FbcAssociation class |
- FbcConsistencyValidator.cpp | |
- FbcConsistencyValidator.h | |
- FbcExtension.cpp | Implementation of FbcExtension, the core module of fbc package |
- FbcExtension.h | Definition of FbcExtension, the core module of fbc package |
- FbcExtensionTypes.h | Includes all SBML types of the fbc package extension in a single header file |
- fbcfwd.h | Implementation of the fbcfwd class |
- FbcIdentifierConsistencyValidator.cpp | |
- FbcIdentifierConsistencyValidator.h | |
- FbcModelPlugin.cpp | Implementation of FbcModelPlugin, the plugin class of the fbc package for the Model element |
- FbcModelPlugin.h | Definition of FbcModelPlugin, the plugin class of fbc package for the Model element |
- FbcOr.cpp | Implementation of the FbcOr class |
- FbcOr.h | Implementation of the FbcOr class |
- FbcReactionPlugin.cpp | Implementation of the FbcReactionPlugin class |
- FbcReactionPlugin.h | Implementation of the FbcReactionPlugin class |
- FbcSBasePlugin.cpp | Implementation of the FbcSBasePlugin class |
- FbcSBasePlugin.h | Definition of the FbcSBasePlugin class |
- FbcSBMLDocumentPlugin.cpp | Implementation of the FbcSBMLDocumentPlugin class |
- FbcSBMLDocumentPlugin.h | Implementation of the FbcSBMLDocumentPlugin class |
- FbcSBMLError.h | Represents SBML errors and other diagnostics |
- FbcSBMLErrorTable.h | Represents SBML errors and other diagnostics |
- FbcSpeciesPlugin.cpp | Implementation of FbcSpeciesPlugin, the plugin class of the fbc package for the Species element |
- FbcSpeciesPlugin.h | Definition of FbcSpeciesPlugin, the plugin class of the fbc package for the Species element |
- FbcToCobraConverter.cpp | Implementation of a fbc 2 cobra converter |
- FbcToCobraConverter.h | Definition of a fbc 2 cobra converter |
- FbcV1ToV2Converter.cpp | Implementation of a fbc v1 to fbc v2 converter |
- FbcV1ToV2Converter.h | Definition of a fbc v1 to fbc v2 converter |
- FbcV2ToV1Converter.cpp | Implementation of a fbc v2 to fbc v1 converter |
- FbcV2ToV1Converter.h | Definition of a fbc v2 to fbc v1 converter |
- FbcValidator.cpp | Base class for SBML Validators |
- FbcValidator.h | Base class for SBML CompValidators |
- FluxBound.cpp | Implementation of FluxBound, the SBase derived class of the fbc package |
- FluxBound.h | Definition of FluxBound, the SBase derived class of the fbc package |
- FluxObjective.cpp | Implementation of the FluxObjective class |
- FluxObjective.h | Definition of FluxObjective, the SBase derived class of the fbc package |
- FormulaFormatter.cpp | Formats an AST formula tree as an SBML formula string |
- FormulaFormatter.h | Formats an AST formula tree as an SBML formula string |
- FormulaParser.cpp | Parses an SBML formula string into an AST |
- FormulaParser.h | Parses an SBML formula string into an AST |
- FormulaTokenizer.cpp | Tokenizes an SBML formula string |
- FormulaTokenizer.h | Tokenizes an SBML formula string |
- FunctionDefinition.cpp | Implementation of FunctionDefinition and ListOfFunctionDefinitions |
- FunctionDefinition.h | Definitions of FunctionDefinition and ListOfFunctionDefinitions |
- FunctionTerm.cpp | Implementation of the FunctionTerm class |
- FunctionTerm.h | Implementation of the FunctionTerm class |
- GeneAssociation.cpp | Implementation of GeneAssociation, the SBase derived class of the fbc package |
- GeneAssociation.h | Definition of GeneAssociation, the SBase derived class of the fbc package |
- GeneProduct.cpp | Implementation of the GeneProduct class |
- GeneProduct.h | Implementation of the GeneProduct class |
- GeneProductAssociation.cpp | Implementation of the GeneProductAssociation class |
- GeneProductAssociation.h | Implementation of the GeneProductAssociation class |
- GeneProductRef.cpp | Implementation of the GeneProductRef class |
- GeneProductRef.h | Implementation of the GeneProductRef class |
- GeneralGlyph.cpp | Implementation of GeneralGlyph for SBML Layout |
- GeneralGlyph.h | Definition of GeneralGlyph for SBML Layout |
- Geometry.cpp | Implementation of the Geometry class |
- Geometry.h | Definition of the Geometry class |
- GeometryDefinition.cpp | Implementation of the GeometryDefinition class |
- GeometryDefinition.h | Definition of the GeometryDefinition class |
- GlobalRenderInformation.cpp | Class for the storage of global render information |
- GlobalRenderInformation.h | Definition of the GlobalRenderInformation class |
- GlobalStyle.cpp | Implementation of the GlobalStyle class |
- GlobalStyle.h | Definition of the GlobalStyle class |
- GradientBase.cpp | Abstract base class for gradient objects |
- GradientBase.h | Abstract base class for gradient definitions |
- GradientStop.cpp | Class representing a stop in a gradient definition |
- GradientStop.h | Class for representing a stop in a gradient definition |
- GraphicalObject.cpp | Implementation of GraphicalObject for SBML Layout |
- GraphicalObject.h | Definition of GraphicalObject for SBML Layout |
- GraphicalPrimitive1D.cpp | Abstract base class for graphical 1D objects |
- GraphicalPrimitive1D.h | Definition of the GraphicalPrimitive1D class |
- GraphicalPrimitive2D.cpp | Implementation of the GraphicalPrimitive2D class |
- GraphicalPrimitive2D.h | Definition of the GraphicalPrimitive2D class |
- Group.cpp | Implementation of the Group class |
- Group.h | Definition of the Group class |
- GroupsConsistencyValidator.cpp | |
- GroupsConsistencyValidator.h | |
- GroupsExtension.cpp | Implementation of GroupsExtension |
- GroupsExtension.h | Definition of GroupsExtension |
- GroupsExtensionTypes.h | Definition of GroupsExtensionTypes |
- groupsfwd.h | Definition of groupsfwd |
- GroupsIdentifierConsistencyValidator.cpp | |
- GroupsIdentifierConsistencyValidator.h | |
- GroupsModelPlugin.cpp | Implementation of the GroupsModelPlugin class |
- GroupsModelPlugin.h | Definition of the GroupsModelPlugin class |
- GroupsSBMLDocumentPlugin.cpp | Implementation of the GroupsSBMLDocumentPlugin class |
- GroupsSBMLDocumentPlugin.h | Definition of the GroupsSBMLDocumentPlugin class |
- GroupsSBMLError.h | Definition of the GroupsSBMLError class |
- GroupsSBMLErrorTable.h | Definition of the GroupsSBMLErrorTable class |
- GroupsValidator.cpp | Definition of GroupsValidator |
- GroupsValidator.h | Definition of GroupsValidator |
- IdentifierConsistencyValidator.cpp | |
- IdentifierConsistencyValidator.h | |
- IdentifierTransformer.cpp | |
- IdentifierTransformer.h | |
- IdFilter.cpp | |
- IdFilter.h | |
- IdList.cpp | |
- IdList.h | |
- Image.cpp | Implementation of the Image class |
- Image.h | Definition of the Image class |
- InitialAssignment.cpp | Implementation of InitialAssignment and ListOfInitialAssignments |
- InitialAssignment.h | Definitions of InitialAssignment and ListOfInitialAssignments |
- Input.cpp | Implementation of the Input class |
- Input.h | Implementation of the Input class |
- InSpeciesTypeBond.cpp | : Implementation of the InSpeciesTypeBond class |
- InSpeciesTypeBond.h | : Implementation of the InSpeciesTypeBond class |
- InteriorPoint.cpp | Implementation of the InteriorPoint class |
- InteriorPoint.h | Definition of the InteriorPoint class |
- InternalConsistencyValidator.cpp | |
- InternalConsistencyValidator.h | |
- IntraSpeciesReaction.cpp | : Implementation of the IntraSpeciesReaction class |
- IntraSpeciesReaction.h | : Implementation of the IntraSpeciesReaction class |
- ISBMLExtensionNamespaces.cpp | |
- ISBMLExtensionNamespaces.h | |
- KeyValuePair.cpp | Implementation of the KeyValuePair class |
- KeyValuePair.h | Definition of the KeyValuePair class |
- KineticLaw.cpp | Implementation of KineticLaw |
- KineticLaw.h | Definition of KineticLaw |
- L1CompatibilityValidator.cpp | |
- L1CompatibilityValidator.h | |
- L2v1CompatibilityValidator.cpp | |
- L2v1CompatibilityValidator.h | |
- L2v2CompatibilityValidator.cpp | |
- L2v2CompatibilityValidator.h | |
- L2v3CompatibilityValidator.cpp | |
- L2v3CompatibilityValidator.h | |
- L2v4CompatibilityValidator.cpp | |
- L2v4CompatibilityValidator.h | |
- L3FormulaFormatter.cpp | Formats an AST formula tree as an SBML L3 formula string |
- L3FormulaFormatter.h | Formats an L3 AST formula tree as an SBML formula string |
- L3Parser.cpp | |
- L3Parser.h | Definition of the level 3 infix-to-mathml parser C functions |
- L3ParserSettings.cpp | Definition of the level 3 infix-to-mathml parser settings |
- L3ParserSettings.h | Definition of the level 3 infix-to-mathml parser settings |
- L3v1CompatibilityValidator.cpp | |
- L3v1CompatibilityValidator.h | |
- L3v2CompatibilityValidator.cpp | |
- L3v2CompatibilityValidator.h | |
- Layout.cpp | Implementation of Layout for SBML Layout |
- Layout.h | Definition of Layout for SBML Layout |
- LayoutAnnotation.cpp | Layout annotation I/O |
- LayoutAnnotation.h | Layout annotation I/O |
- LayoutConsistencyValidator.cpp | |
- LayoutConsistencyValidator.h | |
- LayoutExtension.cpp | Implementation of LayoutExtension, the core module of layout package |
- LayoutExtension.h | Definition of LayoutExtension, the core module of layout package |
- LayoutExtensionTypes.h | Include all SBML types of layout extension in a single header file |
- layoutfwd.h | C Structure declarations for SBML Layout |
- LayoutIdentifierConsistencyValidator.cpp | |
- LayoutIdentifierConsistencyValidator.h | |
- LayoutModelPlugin.cpp | Implementation of LayoutModelPlugin, the plugin class of layout package for the Model element |
- LayoutModelPlugin.h | Definition of LayoutModelPlugin, the plugin class of layout package for Model element |
- LayoutSBMLDocumentPlugin.cpp | Implementation of the LayoutSBMLDocumentPlugin class |
- LayoutSBMLDocumentPlugin.h | Implementation of the LayoutSBMLDocumentPlugin class |
- LayoutSBMLError.h | Implementation of the LayoutSBMLError class |
- LayoutSBMLErrorTable.h | |
- LayoutSpeciesReferencePlugin.cpp | Implementation of LayoutSpeciesReferencePlugin, the plugin object of layout package (Level2) for the SpeciesReference and ModifierSpeciesReference elements |
- LayoutSpeciesReferencePlugin.h | Definition of LayoutSpeciesReferencePlugin, the plugin class of layout package (Level2) for the SpeciesReference and ModifierSpeciesReference elements |
- LayoutUtilities.cpp | Implementation of some methods used by many of the layout files |
- LayoutUtilities.h | Definition of LayoutUtilities for SBML Layout |
- LayoutValidator.cpp | Implementation of the LayoutValidator class |
- LayoutValidator.h | Implementation of the LayoutValidator class |
- libsbml-config.h | Decides whether to #include Unix or Windows configuration variables |
- libsbml-version.cpp | Define libSBML version numbers for access from client software |
- libsbml-version.h | Define libSBML version numbers for access from client software |
- LibXMLAttributes.cpp | |
- LibXMLAttributes.h | |
- LibXMLHandler.cpp | |
- LibXMLHandler.h | |
- LibXMLNamespaces.cpp | Extracts XML namespace declarations from LibXML prefix/URI pairs |
- LibXMLNamespaces.h | Extracts XML namespace declarations from LibXML prefix/URI pairs |
- LibXMLParser.cpp | |
- LibXMLParser.h | |
- LibXMLTranscode.cpp | |
- LibXMLTranscode.h | |
- LinearGradient.cpp | Implementation of the LinearGradient class |
- LinearGradient.h | Definition of the LinearGradient class |
- LineEnding.cpp | Class representing line endings,e.g |
- LineEnding.h | Class representing line endings, e.g |
- LineSegment.cpp | Implementation of LineSegment for SBML Layout |
- LineSegment.h | Definition of LineSegment for SBML Layout |
- List.cpp | Simple, generic list class |
- List.h | Simple, generic list utility class |
- ListOf.cpp | Wraps List and inherits from SBase |
- ListOf.h | |
- ListOfAdjacentDomains.cpp | Implementation of the ListOfAdjacentDomains class |
- ListOfAdjacentDomains.h | Definition of the ListOfAdjacentDomains class |
- ListOfAnalyticVolumes.cpp | Implementation of the ListOfAnalyticVolumes class |
- ListOfAnalyticVolumes.h | Definition of the ListOfAnalyticVolumes class |
- ListOfColorDefinitions.cpp | Implementation of the ListOfColorDefinitions class |
- ListOfColorDefinitions.h | Definition of the ListOfColorDefinitions class |
- ListOfCoordinateComponents.cpp | Implementation of the ListOfCoordinateComponents class |
- ListOfCoordinateComponents.h | Definition of the ListOfCoordinateComponents class |
- ListOfCSGNodes.cpp | Implementation of the ListOfCSGNodes class |
- ListOfCSGNodes.h | Definition of the ListOfCSGNodes class |
- ListOfCSGObjects.cpp | Implementation of the ListOfCSGObjects class |
- ListOfCSGObjects.h | Definition of the ListOfCSGObjects class |
- ListOfCurveElements.cpp | Storage class for curve elements |
- ListOfCurveElements.h | Definition of the ListOfCurveElements class |
- ListOfDeletions.cpp | Implementation of ListOfDeletions |
- ListOfDeletions.h | Definition of ListOfDeletions, the SBase derived class of deletions package |
- ListOfDomains.cpp | Implementation of the ListOfDomains class |
- ListOfDomains.h | Definition of the ListOfDomains class |
- ListOfDomainTypes.cpp | Implementation of the ListOfDomainTypes class |
- ListOfDomainTypes.h | Definition of the ListOfDomainTypes class |
- ListOfDrawables.cpp | Implementation of the ListOfDrawables class |
- ListOfDrawables.h | Definition of the ListOfDrawables class |
- ListOfExternalModelDefinitions.cpp | Implementation of ListOfExternalModelDefinitions |
- ListOfExternalModelDefinitions.h | Definition of ListOfExternalModelDefinitions, the SBase derived class of the Hierarchial Model Defintions package |
- ListOfGeometryDefinitions.cpp | Implementation of the ListOfGeometryDefinitions class |
- ListOfGeometryDefinitions.h | Definition of the ListOfGeometryDefinitions class |
- ListOfGlobalRenderInformation.cpp | Implementation of the ListOfGlobalRenderInformation class |
- ListOfGlobalRenderInformation.h | Definition of the ListOfGlobalRenderInformation class |
- ListOfGlobalStyles.cpp | Implementation of the ListOfGlobalStyles class |
- ListOfGlobalStyles.h | Definition of the ListOfGlobalStyles class |
- ListOfGradientDefinitions.cpp | Implementation of the ListOfGradientDefinitions class |
- ListOfGradientDefinitions.h | Definition of the ListOfGradientDefinitions class |
- ListOfGradientStops.cpp | Implementation of the ListOfGradientStops class |
- ListOfGradientStops.h | Definition of the ListOfGradientStops class |
- ListOfGroups.cpp | Implementation of the ListOfGroups class |
- ListOfGroups.h | Definition of the ListOfGroups class |
- ListOfInteriorPoints.cpp | Implementation of the ListOfInteriorPoints class |
- ListOfInteriorPoints.h | Definition of the ListOfInteriorPoints class |
- ListOfKeyValuePairs.cpp | Implementation of the ListOfKeyValuePairs class |
- ListOfKeyValuePairs.h | Definition of the ListOfKeyValuePairs class |
- ListOfLineEndings.cpp | Implementation of the ListOfLineEndings class |
- ListOfLineEndings.h | Definition of the ListOfLineEndings class |
- ListOfLocalRenderInformation.cpp | Implementation of the ListOfLocalRenderInformation class |
- ListOfLocalRenderInformation.h | Definition of the ListOfLocalRenderInformation class |
- ListOfLocalStyles.cpp | Implementation of the ListOfLocalStyles class |
- ListOfLocalStyles.h | Definition of the ListOfLocalStyles class |
- ListOfMembers.cpp | Implementation of the ListOfMembers class |
- ListOfMembers.h | Definition of the ListOfMembers class |
- ListOfModelDefinitions.cpp | Implementation of ListOfModelDefinitions from the comp package |
- ListOfModelDefinitions.h | Definition of ListOfModelDefinitions, the SBase derived class of modelDefinitions package |
- ListOfOrdinalMappings.cpp | Implementation of the ListOfOrdinalMappings class |
- ListOfOrdinalMappings.h | Definition of the ListOfOrdinalMappings class |
- ListOfParametricObjects.cpp | Implementation of the ListOfParametricObjects class |
- ListOfParametricObjects.h | Definition of the ListOfParametricObjects class |
- ListOfPorts.cpp | Implementation of ListOfPorts |
- ListOfPorts.h | Definition of ListOfPorts, the SBase derived class of ports package |
- ListOfReplacedElements.cpp | Implementation of ListOfReplacedElements from the comp package |
- ListOfReplacedElements.h | Definition of ListOfReplacedElements, the SBase derived class of replacedElements package |
- ListOfSampledFields.cpp | Implementation of the ListOfSampledFields class |
- ListOfSampledFields.h | Definition of the ListOfSampledFields class |
- ListOfSampledVolumes.cpp | Implementation of the ListOfSampledVolumes class |
- ListOfSampledVolumes.h | Definition of the ListOfSampledVolumes class |
- ListOfSubmodels.cpp | Implementation of ListOfSubmodels |
- ListOfSubmodels.h | Definition of ListOfSubmodels, the SBase derived class of submodels package |
- ListOfUncertainties.cpp | Implementation of the ListOfUncertainties class |
- ListOfUncertainties.h | Definition of the ListOfUncertainties class |
- ListOfUncertParameters.cpp | Implementation of the ListOfUncertParameters class |
- ListOfUncertParameters.h | Definition of the ListOfUncertParameters class |
- ListOfUserDefinedConstraintComponents.cpp | Implementation of the ListOfUserDefinedConstraintComponents class |
- ListOfUserDefinedConstraintComponents.h | Definition of the ListOfUserDefinedConstraintComponents class |
- ListOfUserDefinedConstraints.cpp | Implementation of the ListOfUserDefinedConstraints class |
- ListOfUserDefinedConstraints.h | Definition of the ListOfUserDefinedConstraints class |
- LocalParameter.cpp | Implementations of LocalLocalParameter and ListOfLocalLocalParameters |
- LocalParameter.h | Definitions of LocalParameter and ListOfLocalParameters |
- LocalRenderInformation.cpp | Implementation of the LocalRenderInformation class |
- LocalRenderInformation.h | Definition of the LocalRenderInformation class |
- LocalStyle.cpp | Class for representing a local style |
- LocalStyle.h | Definition of the LocalStyle class |
- MathFilter.cpp | |
- MathFilter.h | |
- MathML.cpp | Utilities for reading and writing MathML to/from text strings |
- MathML.h | Utilities for reading and writing MathML to/from text strings |
- MathMLConsistencyValidator.cpp | |
- MathMLConsistencyValidator.h | |
- Member.cpp | Implementation of the Member class |
- Member.h | Definition of the Member class |
- memory.c | |
- memory.h | |
- MetaIdFilter.cpp | |
- MetaIdFilter.h | |
- MixedGeometry.cpp | Implementation of the MixedGeometry class |
- MixedGeometry.h | Definition of the MixedGeometry class |
- Model.cpp | Implementation of Model |
- Model.h | Definition of Model |
- ModelCreator.cpp | ModelCreator I/O |
- ModelCreator.h | ModelCreator I/O |
- ModelDefinition.cpp | Implementation of ModelDefinition, the SBase-derived class of the comp package |
- ModelDefinition.h | Definition of ModelDefinition, the SBase derived class of the comp package |
- ModelHistory.cpp | ModelHistory I/O |
- ModelHistory.h | ModelHistory I/O |
- ModelingPracticeValidator.cpp | |
- ModelingPracticeValidator.h | |
- ModifierSpeciesReference.cpp | Implementation of ModifierSpeciesReference |
- ModifierSpeciesReference.h | Definitions of ModifierSpeciesReference |
- MultiASTPlugin.cpp | Implementation of MultiASTPlugin, the plugin class of multi package for the AST element |
- MultiASTPlugin.h | Definition of MultiASTPlugin, the plugin class of multi package for the AST element |
- MultiCompartmentPlugin.cpp | : Implementation of the MultiCompartmentPlugin class |
- MultiCompartmentPlugin.h | : Implementation of the MultiCompartmentPlugin class |
- MultiConsistencyValidator.cpp | |
- MultiConsistencyValidator.h | |
- MultiExtension.cpp | : Implementation of the MultiExtension class |
- MultiExtension.h | : Implementation of the MultiExtension class |
- MultiExtensionTypes.h | : Implementation of the MultiExtensionTypes class |
- multifwd.h | : Implementation of the multifwd class |
- MultiIdentifierConsistencyValidator.cpp | |
- MultiIdentifierConsistencyValidator.h | |
- MultiListOfReactionsPlugin.cpp | : Implementation of the MultiListOfReactionsPlugin class |
- MultiListOfReactionsPlugin.h | : Implementation of the MultiListOfReactionsPlugin class |
- MultiMathMLConsistencyValidator.cpp | |
- MultiMathMLConsistencyValidator.h | |
- MultiModelPlugin.cpp | : Implementation of the MultiModelPlugin class |
- MultiModelPlugin.h | : Implementation of the MultiModelPlugin class |
- MultiSBMLDocumentPlugin.cpp | : Implementation of the MultiSBMLDocumentPlugin class |
- MultiSBMLDocumentPlugin.h | : Implementation of the MultiSBMLDocumentPlugin class |
- MultiSBMLError.h | : Implementation of the MultiSBMLError class |
- MultiSBMLErrorTable.h | : Implementation of the MultiSBMLErrorTable class |
- MultiSimpleSpeciesReferencePlugin.cpp | : Implementation of the MultiSimpleSpeciesReferencePlugin class |
- MultiSimpleSpeciesReferencePlugin.h | : Implementation of the MultiSimpleSpeciesReferencePlugin class |
- MultiSpeciesPlugin.cpp | : Implementation of the MultiSpeciesPlugin class |
- MultiSpeciesPlugin.h | : Implementation of the MultiSpeciesPlugin class |
- MultiSpeciesReferencePlugin.cpp | : Implementation of the MultiSpeciesReferencePlugin class |
- MultiSpeciesReferencePlugin.h | : Implementation of the MultiSpeciesReferencePlugin class |
- MultiSpeciesType.cpp | : Implementation of the MultiSpeciesType class |
- MultiSpeciesType.h | : Implementation of the MultiSpeciesType class |
- MultiValidator.cpp | : Implementation of the MultiValidator class |
- MultiValidator.h | : Implementation of the MultiValidator class |
- Objective.cpp | Implementation of the Objective class |
- Objective.h | Definition of Objective, the SBase derived class of the fbc package |
- operationReturnValues.cpp | Enumeration of values returned by operations within libSBML |
- operationReturnValues.h | Enumeration of values returned by operations within libSBML |
- OrdinalMapping.cpp | Implementation of the OrdinalMapping class |
- OrdinalMapping.h | Definition of the OrdinalMapping class |
- Output.cpp | Implementation of the Output class |
- Output.h | Implementation of the Output class |
- OutwardBindingSite.cpp | : Implementation of the OutwardBindingSite class |
- OutwardBindingSite.h | : Implementation of the OutwardBindingSite class |
- OverdeterminedValidator.cpp | |
- OverdeterminedValidator.h | |
- Parameter.cpp | Implementations of Parameter and ListOfParameters |
- Parameter.h | Definitions of Parameter and ListOfParameters |
- ParametricGeometry.cpp | Implementation of the ParametricGeometry class |
- ParametricGeometry.h | Definition of the ParametricGeometry class |
- ParametricObject.cpp | Implementation of the ParametricObject class |
- ParametricObject.h | Definition of the ParametricObject class |
- Point.cpp | Implementation of Point for SBML Layout |
- Point.h | Definition of Point for SBML Layout |
- Polygon.cpp | Implementation of the Polygon class |
- Polygon.h | Class representing a polygon |
- Port.cpp | Implementation of Port, the SBase-derived class of the comp package |
- Port.h | Definition of Port, the SBase derived class of the comp package |
- PossibleSpeciesFeatureValue.cpp | : Implementation of the PossibleSpeciesFeatureValue class |
- PossibleSpeciesFeatureValue.h | : Implementation of the PossibleSpeciesFeatureValue class |
- PrefixTransformer.cpp | |
- PrefixTransformer.h | |
- Priority.cpp | Implementation of Priority |
- Priority.h | Definition of Priority |
- QualConsistencyValidator.cpp | |
- QualConsistencyValidator.h | |
- QualExtension.cpp | Implementation of QualExtension, the core module of qual package |
- QualExtension.h | Definition of QualExtension, the core module of qual package |
- QualExtensionTypes.h | Include all SBML types of qual extension in a single header file |
- qualfwd.h | SBML Qual C structure declarations |
- QualIdentifierConsistencyValidator.cpp | |
- QualIdentifierConsistencyValidator.h | |
- QualitativeSpecies.cpp | Implementation of the QualitativeSpecies class |
- QualitativeSpecies.h | Implementation of the QualitativeSpecies class |
- QualMathConsistencyValidator.cpp | |
- QualMathConsistencyValidator.h | |
- QualModelPlugin.cpp | Implementation of QualModelPlugin, the plugin class of qual package for the Model element |
- QualModelPlugin.h | Definition of QualModelPlugin, the plugin class of qual package for the Model element |
- QualSBMLDocumentPlugin.cpp | Implementation of QualSBMLDocumentPlugin, the plugin class of qual package for the SBase element |
- QualSBMLDocumentPlugin.h | Implementation of the QualSBMLDocumentPlugin class |
- QualSBMLError.h | Represents SBML errors and other diagnostics |
- QualSBMLErrorTable.h | Represents SBML errors and other diagnostics |
- QualValidator.cpp | Base class for SBML Validators |
- QualValidator.h | Implementation of the QualValidator class |
- RadialGradient.cpp | Implementation of the RadialGradient class |
- RadialGradient.h | Definition of the RadialGradient class |
- RateRule.cpp | Implementations of RateRule |
- RateRule.h | Definitions of RateRule |
- RDFAnnotation.h | RDFAnnotation I/O |
- RDFAnnotationParser.cpp | RDFAnnotation I/O |
- RDFAnnotationParser.h | RDFAnnotation I/O |
- Reaction.cpp | Implementations of Reaction and ListOfReactions |
- Reaction.h | Definitions of Reaction and ListOfReactions |
- ReactionGlyph.cpp | Implementation of ReactionGlyph for SBML Layout |
- ReactionGlyph.h | Definition of ReactionGlyph for SBML Layout |
- Rectangle.cpp | Implementation of the Rectangle class |
- Rectangle.h | Definition of the Rectangle class |
- ReferenceGlyph.cpp | Implementation of ReferenceGlyph for SBML Layout |
- ReferenceGlyph.h | Definition of ReferenceGlyph for SBML Layout |
- RegisterConverters.cpp | Registers all available converters |
- RelAbsVector.cpp | Class for representing coordinates that can have a relative and an absolute part |
- RelAbsVector.h | Definition of the RelAbsVector class |
- RenderConsistencyValidator.cpp | |
- RenderConsistencyValidator.h | |
- RenderCubicBezier.cpp | Implementation of the RenderCubicBezier class |
- RenderCubicBezier.h | Definition of the RenderCubicBezier class |
- RenderCurve.cpp | Implementation of the RenderCurve class |
- RenderCurve.h | Definition of the RenderCurve class |
- RenderExtension.cpp | Implementation of RenderExtension, the core module of the render package |
- RenderExtension.h | Definition of RenderExtension, the core module of the render package |
- RenderExtensionTypes.h | Definition of RenderExtensionTypes |
- renderfwd.h | Definition of renderfwd |
- RenderGraphicalObjectPlugin.cpp | Implementation of RenderGraphicalObjectPlugin, the plugin class of the render package for the GraphicalObject element |
- RenderGraphicalObjectPlugin.h | Definition of RenderGraphicalObjectPlugin, the plugin class of the render package for the GraphicalObject element |
- RenderGroup.cpp | Implementation of the RenderGroup class |
- RenderGroup.h | Definition of the RenderGroup class |
- RenderIdentifierConsistencyValidator.cpp | |
- RenderIdentifierConsistencyValidator.h | |
- RenderInformationBase.cpp | Implementation of the RenderInformationBase class |
- RenderInformationBase.h | Definition of the RenderInformationBase class |
- RenderLayoutConverter.cpp | Simple converter to convert Layout + Render from l2 to L3 and vice versa |
- RenderLayoutConverter.h | Simple converter to convert Layout + Render from l2 to L3 and vice versa |
- RenderLayoutPlugin.cpp | Implementation of RenderLayoutPlugin, the plugin class of the fbc package for the Model element |
- RenderLayoutPlugin.h | Definition of RenderLayoutPlugin, the plugin class of fbc package for the Model element |
- RenderListOfLayoutsPlugin.cpp | Implementation of RenderListOfLayoutsPlugin, the plugin class of the fbc package for the Model element |
- RenderListOfLayoutsPlugin.h | Definition of RenderListOfLayoutsPlugin, the plugin class of fbc package for the Model element |
- RenderPoint.cpp | Implementation of the RenderPoint class |
- RenderPoint.h | Definition of the RenderPoint class |
- RenderSBMLDocumentPlugin.cpp | Implementation of the RenderSBMLDocumentPlugin class |
- RenderSBMLDocumentPlugin.h | Definition of the RenderSBMLDocumentPlugin class |
- RenderSBMLError.h | Definition of the RenderSBMLError class |
- RenderSBMLErrorTable.h | Definition of the RenderSBMLErrorTable class |
- RenderUtilities.cpp | Implementation of RenderUtilities, a class of utility functions for the render package |
- RenderUtilities.h | Definition of RenderUtilities, a class of utility functions for the render package |
- RenderValidator.cpp | Definition of RenderValidator |
- RenderValidator.h | Definition of RenderValidator |
- ReplacedBy.cpp | Implementation of ReplacedBy, the SBaseRef derived class of the comp package |
- ReplacedBy.h | Definition of ReplacedBy, the Replacing-derived class of the comp package |
- ReplacedElement.cpp | Implementation of ReplacedElement, the SBaseRef derived class of replacedElements package |
- ReplacedElement.h | Definition of ReplacedElement, the SBase derived class of replacedElements package |
- Replacing.cpp | Implementation of Replacing, the SBaseRef derived class of Replacings package |
- Replacing.h | Definition of Replacing, the SBaseRef-derived class of the comp package |
- Rule.cpp | Implementations of Rule and ListOfRules |
- Rule.h | Definitions of Rule and ListOfRules |
- SampledField.cpp | Implementation of the SampledField class |
- SampledField.h | Definition of the SampledField class |
- SampledFieldGeometry.cpp | Implementation of the SampledFieldGeometry class |
- SampledFieldGeometry.h | Definition of the SampledFieldGeometry class |
- SampledVolume.cpp | Implementation of the SampledVolume class |
- SampledVolume.h | Definition of the SampledVolume class |
- SBase.cpp | Implementation of SBase, the base object of all SBML objects |
- SBase.h | Definition of SBase, the base object of all SBML objects |
- SBaseExtensionPoint.cpp | Implementation of SBaseExtensionPoint |
- SBaseExtensionPoint.h | Definition of SBaseExtensionPoint |
- SBasePlugin.cpp | Implementation of SBasePlugin, the base class of extension entities plugged in SBase derived classes in the SBML Core package |
- SBasePlugin.h | Definition of SBasePlugin, the base class of extension entities plugged in SBase derived classes in the SBML Core package |
- SBasePluginCreator.h | Template class for SBasePlugin-based classes |
- SBasePluginCreatorBase.cpp | Implementation of SBasePluginCreatorBase, the base class of SBasePlugin creator classes |
- SBasePluginCreatorBase.h | Definition of SBasePluginCreatorBase, the base class of SBasePlugin creator classes |
- SBaseRef.cpp | Implementation of SBaseRef, the SBase-derived class of the comp package |
- SBaseRef.h | Definition of SBaseRef, the SBase derived class of the comp package |
- SBMLConstructorException.cpp | Implementation of SBMLConstructorException, the exception class for constructor exceptions |
- SBMLConstructorException.h | Definition of SBMLConstructorException, the exception class for constructor exceptions |
- SBMLConvert.cpp | Performs conversion between SBML levels |
- SBMLConverter.cpp | Implementation of SBMLConverter, the base class of package extensions |
- SBMLConverter.h | Definition of SBMLConverter, the base class for SBML conversion |
- SBMLConverterRegister.h | Definition of SBMLConverterRegister, a template to register converters |
- SBMLConverterRegistry.cpp | Implementation of SBMLConverterRegistry, a registry of available converters |
- SBMLConverterRegistry.h | Definition of SBMLConverterRegistry, a registry of available converters |
- SBMLConverterTypes.h | Definition of SBMLConverterTypes |
- SBMLDocument.cpp | Implementation of the top-level container for an SBML Model and associated data |
- SBMLDocument.h | Top-level container for an SBML Model and associated data |
- SBMLDocumentPlugin.cpp | Implementation of SBMLDocumentPlugin, the derived class of SBasePlugin |
- SBMLDocumentPlugin.h | Definition of SBMLDocumentPlugin, the derived class of SBasePlugin |
- SBMLDocumentPluginNotRequired.cpp | Implementation of SBMLDocumentPluginNotRequired, the plugin class of layout package for the Model element |
- SBMLDocumentPluginNotRequired.h | Definition of SBMLDocumentPluginNotRequired, the plugin class of layout package for the SBMLDocument element, whose 'required' attribute must be 'false' |
- SBMLError.cpp | Represents SBML errors and other diagnostics |
- SBMLError.h | Represents SBML errors and other diagnostics |
- SBMLErrorLog.cpp | Stores errors (and messages) encountered while processing SBML |
- SBMLErrorLog.h | Stores errors (and messages) encountered while processing SBML |
- SBMLErrorTable.h | Represents SBML errors and other diagnostics |
- SBMLExtension.cpp | Implementation of SBMLExtension, the base class of package extensions |
- SBMLExtension.h | Definition of SBMLExtension, the core component of SBML package extension |
- SBMLExtensionException.cpp | SBMLExtensionException class, the exception class for package extension |
- SBMLExtensionException.h | Class of exceptions thrown in some situations |
- SBMLExtensionNamespaces.cpp | Implementation of C-API for the SBMLExtensionNamespaces class |
- SBMLExtensionNamespaces.h | Class to store the SBML Level, Version and namespace of a package |
- SBMLExtensionRegister.h | Template class for registering extension packages |
- SBMLExtensionRegistry.cpp | Implementation of SBMLExtensionRegistry, the registry class in which extension packages are registered |
- SBMLExtensionRegistry.h | The registry class for tracking package extensions |
- SBMLExternalValidator.cpp | |
- SBMLExternalValidator.h | |
- SBMLFileResolver.cpp | Implementation of SBMLFileResolver, the file system based resolver for SBML Documents |
- SBMLFileResolver.h | A file-based resolver for SBML Documents |
- SBMLFunctionDefinitionConverter.cpp | Implementation of SBMLFunctionDefinitionConverter, a converter replacing function definitions |
- SBMLFunctionDefinitionConverter.h | Definition of SBMLFunctionDefinitionConverter, a converter replacing function definitions |
- sbmlfwd.h | Forward declarations for all opaque C types |
- SBMLIdConverter.cpp | Implementation of SBMLIdConverter, a converter renaming SIds |
- SBMLIdConverter.h | Definition of SBMLIdConverter, a converter renaming SIds |
- SBMLInferUnitsConverter.cpp | Implementation of SBMLInferUnitsConverter |
- SBMLInferUnitsConverter.h | Definition of SBMLInferUnitsConverter, infers units for parameters |
- SBMLInitialAssignmentConverter.cpp | Implementation of SBMLInitialAssignmentConverter, a converter inlining initial assignments |
- SBMLInitialAssignmentConverter.h | Definition of SBMLInitialAssignmentConverter, a converter inlining function definitions |
- SBMLInternalValidator.cpp | Implementation of SBMLInternalValidator, the validator for all internal validation performed by libSBML |
- SBMLInternalValidator.h | Definition of SBMLInternalValidator, the validator for all internal validation performed by libSBML |
- SBMLLevel1Version1Converter.cpp | Implementation of SBMLLevel1Version1Converter |
- SBMLLevel1Version1Converter.h | Definition of SBMLLevel1Version1Converter |
- SBMLLevelVersionConverter.cpp | Implementation of SBMLLevelVersionConverter, the base class of package extensions |
- SBMLLevelVersionConverter.h | Definition of SBMLLevelVersionConverter, the base class for SBML conversion |
- SBMLLocalParameterConverter.cpp | Implementation of SBMLLocalParameterConverter, a converter replacing local parameters with global ones |
- SBMLLocalParameterConverter.h | Definition of SBMLLocalParameterConverter, a converter replacing local parameters with global ones |
- SBMLNamespaces.cpp | SBMLNamespaces class to store level/version and namespace |
- SBMLNamespaces.h | SBMLNamespaces class to store level/version and namespace |
- SBMLRateOfConverter.cpp | Implementation of SBMLRateOfConverter, a converter changing 'rateOf' into functionDefinition |
- SBMLRateOfConverter.h | Definition of SBMLRateOfConverter, a converter changing reactions into rate rules |
- SBMLRateRuleConverter.cpp | Implementation of SBMLRateRuleConverter, a converter from raterule to reaction |
- SBMLRateRuleConverter.h | Definition of SBMLRateRuleConverter, a converter from raterule to reaction |
- SBMLReactionConverter.cpp | Implementation of SBMLReactionConverter, a converter changing reactions into rate rules |
- SBMLReactionConverter.h | Definition of SBMLReactionConverter, a converter changing reactions into rate rules |
- SBMLReader.cpp | Reads an SBML Document into memory |
- SBMLReader.h | Reads an SBML Document into memory |
- SBMLResolver.cpp | Implementation of SBMLResolver, the base class of package extensions |
- SBMLResolver.h | Definition of SBMLResolver, the base class for resolving SBML documents |
- SBMLResolverRegistry.cpp | Implementation of SBMLResolverRegistry, a registry of available resolvers |
- SBMLResolverRegistry.h | Definition of SBMLResolverRegistry, a registry of available resolvers |
- SBMLRuleConverter.cpp | Implementation of SBMLRuleConverter, a converter sorting rules |
- SBMLRuleConverter.h | Definition of SBMLRuleConverter, a converter sorting rules |
- SBMLStripPackageConverter.cpp | Implementation of SBMLStripPackageConverter, the base class of package extensions |
- SBMLStripPackageConverter.h | Definition of SBMLStripPackageConverter, the base class for SBML conversion |
- SBMLTransforms.cpp | Transform functions |
- SBMLTransforms.h | |
- SBMLTypeCodes.cpp | Enumeration to identify SBML objects at runtime |
- SBMLTypeCodes.h | Enumeration to identify SBML objects at runtime |
- SBMLTypes.h | Include all SBML types in a single header file |
- SBMLUnitsConverter.cpp | Implementation of SBMLUnitsConverter, for converting units to SI |
- SBMLUnitsConverter.h | Definition of SBMLUnitsConverter, for converting units to SI |
- SBMLUri.cpp | Implementation of SBMLUri, the utility class for handling uris |
- SBMLUri.h | Definition of SBMLUri, the utility class for handling URIs |
- SBMLValidator.cpp | Implementation of SBMLValidator, the base class for user callable SBML validators |
- SBMLValidator.h | Definition of SBMLValidator, the base class for user callable SBML validators |
- SBMLVisitor.cpp | Visitor Design Pattern for the SBML object tree |
- SBMLVisitor.h | Visitor Design Pattern for the SBML object tree |
- SBMLWriter.cpp | Writes an SBML Document to file or in-memory string |
- SBMLWriter.h | Writes an SBML Document to file or in-memory string |
- SBO.cpp | SBO utility functions |
- SBO.h | SBO utility Function |
- SBOConsistencyValidator.cpp | |
- SBOConsistencyValidator.h | |
- SimpleSpeciesReference.cpp | Implementation of SimpleSpeciesReference |
- SimpleSpeciesReference.h | Definitions of SimpleSpeciesReference |
- SpatialCompartmentMappingUnitSizesCheck.cpp | |
- SpatialCompartmentMappingUnitSizesCheck.h | |
- SpatialCompartmentPlugin.cpp | Implementation of the SpatialCompartmentPlugin class |
- SpatialCompartmentPlugin.h | Definition of the SpatialCompartmentPlugin class |
- SpatialConsistencyValidator.cpp | |
- SpatialConsistencyValidator.h | |
- SpatialExtension.cpp | Implementation of SpatialExtension |
- SpatialExtension.h | Definition of SpatialExtension |
- SpatialExtensionTypes.h | Definition of SpatialExtensionTypes |
- spatialfwd.h | Definition of spatialfwd |
- SpatialIdentifierConsistencyValidator.cpp | |
- SpatialIdentifierConsistencyValidator.h | |
- SpatialModelPlugin.cpp | Implementation of the SpatialModelPlugin class |
- SpatialModelPlugin.h | Definition of the SpatialModelPlugin class |
- SpatialOrdinalMappingGeometryDefinitionCheck.cpp | |
- SpatialOrdinalMappingGeometryDefinitionCheck.h | |
- SpatialParameterPlugin.cpp | Implementation of the SpatialParameterPlugin class |
- SpatialParameterPlugin.h | Definition of the SpatialParameterPlugin class |
- SpatialPoints.cpp | Implementation of the SpatialPoints class |
- SpatialPoints.h | Definition of the SpatialPoints class |
- SpatialReactionPlugin.cpp | Implementation of the SpatialReactionPlugin class |
- SpatialReactionPlugin.h | Definition of the SpatialReactionPlugin class |
- SpatialSampledVolumeRangeOverlapCheck.cpp | |
- SpatialSampledVolumeRangeOverlapCheck.h | |
- SpatialSampledVolumeValueNotInRangeCheck.cpp | |
- SpatialSampledVolumeValueNotInRangeCheck.h | |
- SpatialSBMLDocumentPlugin.cpp | Implementation of the SpatialSBMLDocumentPlugin class |
- SpatialSBMLDocumentPlugin.h | Definition of the SpatialSBMLDocumentPlugin class |
- SpatialSBMLError.h | Definition of the SpatialSBMLError class |
- SpatialSBMLErrorTable.h | Definition of the SpatialSBMLErrorTable class |
- SpatialSpatialSymbolReferenceUniqueRefCheck.cpp | |
- SpatialSpatialSymbolReferenceUniqueRefCheck.h | |
- SpatialSpeciesPlugin.cpp | Implementation of the SpatialSpeciesPlugin class |
- SpatialSpeciesPlugin.h | Definition of the SpatialSpeciesPlugin class |
- SpatialSymbolReference.cpp | Implementation of the SpatialSymbolReference class |
- SpatialSymbolReference.h | Definition of the SpatialSymbolReference class |
- SpatialUniqueAdvectionCoefficientsCheck.cpp | |
- SpatialUniqueAdvectionCoefficientsCheck.h | |
- SpatialUniqueAnalyticVolumeOrdinalsCheck.cpp | |
- SpatialUniqueAnalyticVolumeOrdinalsCheck.h | |
- SpatialUniqueBoundaryConditionsCheck.cpp | |
- SpatialUniqueBoundaryConditionsCheck.h | |
- SpatialUniqueCSGObjectOrdinalsCheck.cpp | |
- SpatialUniqueCSGObjectOrdinalsCheck.h | |
- SpatialUniqueDiffusionCoefficientsCheck.cpp | |
- SpatialUniqueDiffusionCoefficientsCheck.h | |
- SpatialUniqueOrdinalMappingOrdinalsCheck.cpp | |
- SpatialUniqueOrdinalMappingOrdinalsCheck.h | |
- SpatialUniqueSampledVolumeValueCheck.cpp | |
- SpatialUniqueSampledVolumeValueCheck.h | |
- SpatialValidator.cpp | Definition of SpatialValidator |
- SpatialValidator.h | Definition of SpatialValidator |
- Species.cpp | Implementations of Species and ListOfSpecies |
- Species.h | Definitions of Species and ListOfSpecies |
- SpeciesFeature.cpp | : Implementation of the SpeciesFeature class |
- SpeciesFeature.h | : Implementation of the SpeciesFeature class |
- SpeciesFeatureType.cpp | : Implementation of the SpeciesFeatureType class |
- SpeciesFeatureType.h | : Implementation of the SpeciesFeatureType class |
- SpeciesFeatureValue.cpp | : Implementation of the SpeciesFeatureValue class |
- SpeciesFeatureValue.h | : Implementation of the SpeciesFeatureValue class |
- SpeciesGlyph.cpp | Implementation of SpeciesGlyph for SBML Layout |
- SpeciesGlyph.h | Definition of SpeciesGlyph for SBML Layout |
- SpeciesReference.cpp | Implementation of SpeciesReference and ListOfSpeciesReferences |
- SpeciesReference.h | Definitions of SpeciesReference and ListOfSpeciesReferences |
- SpeciesReferenceGlyph.cpp | Implementation of SpeciesReferenceGlyph for SBML Layout |
- SpeciesReferenceGlyph.h | Definition of SpeciesReferenceGlyph for SBML Layout |
- SpeciesReferenceRole.h | Definition of SpeciesReferenceRole enum for SBML Layout |
- SpeciesType.cpp | Implementation of SpeciesType and ListOfSpeciesTypes |
- SpeciesType.h | Definitions of SpeciesType and ListOfSpeciesType |
- SpeciesTypeComponentIndex.cpp | : Implementation of the SpeciesTypeComponentIndex class |
- SpeciesTypeComponentIndex.h | : Implementation of the SpeciesTypeComponentIndex class |
- SpeciesTypeComponentMapInProduct.cpp | : Implementation of the SpeciesTypeComponentMapInProduct class |
- SpeciesTypeComponentMapInProduct.h | : Implementation of the SpeciesTypeComponentMapInProduct class |
- SpeciesTypeInstance.cpp | : Implementation of the SpeciesTypeInstance class |
- SpeciesTypeInstance.h | : Implementation of the SpeciesTypeInstance class |
- Stack.c | |
- Stack.h | |
- StoichiometryMath.cpp | Implementation of StoichiometryMath |
- StoichiometryMath.h | Definition of StoichiometryMath |
- StrictUnitConsistencyValidator.cpp | |
- StrictUnitConsistencyValidator.h | |
- StringBuffer.c | |
- StringBuffer.h | |
- Style.cpp | Implementation of the Style class |
- Style.h | Definition of the Style class |
- SubListOfSpeciesFeatures.cpp | : Implementation of the SubListOfSpeciesFeatures class |
- SubListOfSpeciesFeatures.h | : Implementation of the SubListOfSpeciesFeatures class |
- Submodel.cpp | Implementation of Submodel, the SBase-derived class of the comp package |
- Submodel.h | Definition of Submodel, the SBase derived class of the comp package |
- SyntaxChecker.cpp | Syntax checking functions |
- SyntaxChecker.h | Syntax checking functions |
- Text.cpp | Implementation of the Text class |
- Text.h | Definition of the Text class |
- TextGlyph.cpp | Implementation of TextGlyph for SBML Layout |
- TextGlyph.h | Definition of TextGlyph for SBML Layout |
- Transformation.cpp | Class representing a 3D affine transformation |
- Transformation.h | Abstract class for representing 3D affine transformations |
- Transformation2D.cpp | Class representing a 2D affine transformation |
- Transformation2D.h | Abstract base class for representing 2D affine transformations |
- TransformationComponent.cpp | Implementation of the TransformationComponent class |
- TransformationComponent.h | Definition of the TransformationComponent class |
- Transition.cpp | Implementation of the Transition class |
- Transition.h | Implementation of the Transition class |
- Trigger.cpp | Implementation of Trigger |
- Trigger.h | Definition of Trigger |
- Uncertainty.cpp | Implementation of the Uncertainty class |
- Uncertainty.h | Definition of the Uncertainty class |
- UncertParameter.cpp | Implementation of the UncertParameter class |
- UncertParameter.h | Definition of the UncertParameter class |
- UncertSpan.cpp | Implementation of the UncertSpan class |
- UncertSpan.h | Definition of the UncertSpan class |
- Unit.cpp | Implementations of Unit and ListOfUnits |
- Unit.h | Definitions of Unit and ListOfUnits |
- UnitConsistencyValidator.cpp | |
- UnitConsistencyValidator.h | |
- UnitDefinition.cpp | Implementations of SBML's UnitDefinition and ListOfUnitDefinitions |
- UnitDefinition.h | Definitions of UnitDefinition and ListOfUnitDefinitions |
- UnitKind.c | SBML UnitKind enumeration |
- UnitKind.h | Definition of SBML's UnitKind enumeration |
- UserDefinedConstraint.cpp | Implementation of the UserDefinedConstraint class |
- UserDefinedConstraint.h | Definition of the UserDefinedConstraint class |
- UserDefinedConstraintComponent.cpp | Implementation of the UserDefinedConstraintComponent class |
- UserDefinedConstraintComponent.h | Definition of the UserDefinedConstraintComponent class |
- util.cpp | Utility functions |
- util.h | Utility functions |
- Validator.cpp | Base class for SBML Validators |
- Validator.h | Base class for SBML Validators |
- VConstraint.cpp | Base class for all SBML Validator Constraints |
- VConstraint.h | Base class for all SBML Validator Constraints |
- XercesAttributes.cpp | |
- XercesAttributes.h | |
- XercesHandler.cpp | |
- XercesHandler.h | |
- XercesNamespaces.cpp | |
- XercesNamespaces.h | |
- XercesParser.cpp | |
- XercesParser.h | |
- XercesTranscode.cpp | |
- XercesTranscode.h | |
- XMLAttributes.cpp | XMLAttributes are a list of name/value pairs for XMLElements |
- XMLAttributes.h | XMLAttributes are a list of name/value pairs for XML elements |
- XMLBuffer.cpp | |
- XMLBuffer.h | |
- XMLConstructorException.cpp | XMLConstructorException an exception thrown by XML classes |
- XMLConstructorException.h | XMLConstructorException an exception thrown by XML classes |
- XMLError.cpp | Represents errors (and messages) encountered during an XML parse |
- XMLError.h | Represents errors (and messages) encountered during an XML parse |
- XMLErrorLog.cpp | Stores errors (and messages) encountered while processing XML |
- XMLErrorLog.h | Stores errors (and messages) encountered while processing XML |
- XMLExtern.h | Defines LIBLAX_EXTERN |
- XMLFileBuffer.cpp | |
- XMLFileBuffer.h | |
- XMLHandler.cpp | |
- XMLHandler.h | |
- XMLInputStream.cpp | |
- XMLInputStream.h | XMLInputStream |
- XMLLogOverride.cpp | Utility class implementing a temporary override the severity on error logs |
- XMLLogOverride.h | Utility class implementing a temporary override the severity on error logs |
- XMLMemoryBuffer.cpp | |
- XMLMemoryBuffer.h | |
- XMLNamespaces.cpp | A list of XMLNamespace declarations (URI/prefix pairs) |
- XMLNamespaces.h | A list of XMLNamespace declarations (URI/prefix pairs) |
- XMLNode.cpp | A node in an XML document tree |
- XMLNode.h | Class definition of XMLNode, a node in an XML document tree |
- XMLOutputStream.cpp | |
- XMLOutputStream.h | XMLOutputStream |
- XMLParser.cpp | |
- XMLParser.h | |
- XMLToken.cpp | A unit of XML syntax, either an XML element or text |
- XMLToken.h | A unit of XML syntax, either an XML element or text |
- XMLTokenizer.cpp | |
- XMLTokenizer.h | |
- XMLTriple.cpp | Stores an XML namespace triple |
- XMLTriple.h | Stores an XML namespace triple |
+ DistribMathMLConsistencyValidator.cpp | |
+ DistribMathMLConsistencyValidator.h | |
+ DistribSBasePlugin.cpp | Implementation of the DistribSBasePlugin class |
+ DistribSBasePlugin.h | Definition of the DistribSBasePlugin class |
+ DistribSBMLDocumentPlugin.cpp | Implementation of the DistribSBMLDocumentPlugin class |
+ DistribSBMLDocumentPlugin.h | Definition of the DistribSBMLDocumentPlugin class |
+ DistribSBMLError.h | Definition of the DistribSBMLError class |
+ DistribSBMLErrorTable.h | Definition of the DistribSBMLErrorTable class |
+ DistribUnitConsistencyValidator.cpp | |
+ DistribUnitConsistencyValidator.h | |
+ DistribValidator.cpp | Definition of DistribValidator |
+ DistribValidator.h | Definition of DistribValidator |
+ Domain.cpp | Implementation of the Domain class |
+ Domain.h | Definition of the Domain class |
+ DomainType.cpp | Implementation of the DomainType class |
+ DomainType.h | Definition of the DomainType class |
+ ElementFilter.cpp | |
+ ElementFilter.h | Base class of element filters |
+ Ellipse.cpp | Implementation of the Ellipse class |
+ Ellipse.h | Definition of the Ellipse class |
+ Event.cpp | Implementations of Event and ListOfEvents |
+ Event.h | Definitions of Event and ListOfEvents |
+ EventAssignment.cpp | Implementation of EventAssignment |
+ EventAssignment.h | Definition of EventAssignment and ListOfEventAssignments |
+ ExpatAttributes.cpp | |
+ ExpatAttributes.h | |
+ ExpatHandler.cpp | |
+ ExpatHandler.h | |
+ ExpatParser.cpp | |
+ ExpatParser.h | |
+ ExpectedAttributes.cpp | Implementation of ExpectedAttributes, the class allowing the specification of attributes to expect |
+ ExpectedAttributes.h | Definition of ExpectedAttributes, the class allowing the specification of attributes to expect |
+ ExpressionAnalyser.cpp | Implementation of ExpressionAnalyser |
+ ExpressionAnalyser.h | Definition of ExpressionAnalyser, a class for analysing expressions |
+ extern.h | Definitions of LIBSBML_EXTERN and related things |
+ ExternalModelDefinition.cpp | Implementation of ExternalModelDefinition, the SBase-derived class of the comp package |
+ ExternalModelDefinition.h | Definition of ExternalModelDefinition, the SBase derived class of the comp package |
+ FbcAnd.cpp | Implementation of the FbcAnd class |
+ FbcAnd.h | Implementation of the FbcAnd class |
+ FbcAssociation.cpp | Implementation of the FbcAssociation class |
+ FbcAssociation.h | Implementation of the FbcAssociation class |
+ FbcConsistencyValidator.cpp | |
+ FbcConsistencyValidator.h | |
+ FbcExtension.cpp | Implementation of FbcExtension, the core module of fbc package |
+ FbcExtension.h | Definition of FbcExtension, the core module of fbc package |
+ FbcExtensionTypes.h | Includes all SBML types of the fbc package extension in a single header file |
+ fbcfwd.h | Implementation of the fbcfwd class |
+ FbcIdentifierConsistencyValidator.cpp | |
+ FbcIdentifierConsistencyValidator.h | |
+ FbcModelPlugin.cpp | Implementation of FbcModelPlugin, the plugin class of the fbc package for the Model element |
+ FbcModelPlugin.h | Definition of FbcModelPlugin, the plugin class of fbc package for the Model element |
+ FbcOr.cpp | Implementation of the FbcOr class |
+ FbcOr.h | Implementation of the FbcOr class |
+ FbcReactionPlugin.cpp | Implementation of the FbcReactionPlugin class |
+ FbcReactionPlugin.h | Implementation of the FbcReactionPlugin class |
+ FbcSBasePlugin.cpp | Implementation of the FbcSBasePlugin class |
+ FbcSBasePlugin.h | Definition of the FbcSBasePlugin class |
+ FbcSBMLDocumentPlugin.cpp | Implementation of the FbcSBMLDocumentPlugin class |
+ FbcSBMLDocumentPlugin.h | Implementation of the FbcSBMLDocumentPlugin class |
+ FbcSBMLError.h | Represents SBML errors and other diagnostics |
+ FbcSBMLErrorTable.h | Represents SBML errors and other diagnostics |
+ FbcSpeciesPlugin.cpp | Implementation of FbcSpeciesPlugin, the plugin class of the fbc package for the Species element |
+ FbcSpeciesPlugin.h | Definition of FbcSpeciesPlugin, the plugin class of the fbc package for the Species element |
+ FbcToCobraConverter.cpp | Implementation of a fbc 2 cobra converter |
+ FbcToCobraConverter.h | Definition of a fbc 2 cobra converter |
+ FbcV1ToV2Converter.cpp | Implementation of a fbc v1 to fbc v2 converter |
+ FbcV1ToV2Converter.h | Definition of a fbc v1 to fbc v2 converter |
+ FbcV2ToV1Converter.cpp | Implementation of a fbc v2 to fbc v1 converter |
+ FbcV2ToV1Converter.h | Definition of a fbc v2 to fbc v1 converter |
+ FbcValidator.cpp | Base class for SBML Validators |
+ FbcValidator.h | Base class for SBML CompValidators |
+ FluxBound.cpp | Implementation of FluxBound, the SBase derived class of the fbc package |
+ FluxBound.h | Definition of FluxBound, the SBase derived class of the fbc package |
+ FluxObjective.cpp | Implementation of the FluxObjective class |
+ FluxObjective.h | Definition of FluxObjective, the SBase derived class of the fbc package |
+ FormulaFormatter.cpp | Formats an AST formula tree as an SBML formula string |
+ FormulaFormatter.h | Formats an AST formula tree as an SBML formula string |
+ FormulaParser.cpp | Parses an SBML formula string into an AST |
+ FormulaParser.h | Parses an SBML formula string into an AST |
+ FormulaTokenizer.cpp | Tokenizes an SBML formula string |
+ FormulaTokenizer.h | Tokenizes an SBML formula string |
+ FunctionDefinition.cpp | Implementation of FunctionDefinition and ListOfFunctionDefinitions |
+ FunctionDefinition.h | Definitions of FunctionDefinition and ListOfFunctionDefinitions |
+ FunctionTerm.cpp | Implementation of the FunctionTerm class |
+ FunctionTerm.h | Implementation of the FunctionTerm class |
+ GeneAssociation.cpp | Implementation of GeneAssociation, the SBase derived class of the fbc package |
+ GeneAssociation.h | Definition of GeneAssociation, the SBase derived class of the fbc package |
+ GeneProduct.cpp | Implementation of the GeneProduct class |
+ GeneProduct.h | Implementation of the GeneProduct class |
+ GeneProductAssociation.cpp | Implementation of the GeneProductAssociation class |
+ GeneProductAssociation.h | Implementation of the GeneProductAssociation class |
+ GeneProductRef.cpp | Implementation of the GeneProductRef class |
+ GeneProductRef.h | Implementation of the GeneProductRef class |
+ GeneralGlyph.cpp | Implementation of GeneralGlyph for SBML Layout |
+ GeneralGlyph.h | Definition of GeneralGlyph for SBML Layout |
+ Geometry.cpp | Implementation of the Geometry class |
+ Geometry.h | Definition of the Geometry class |
+ GeometryDefinition.cpp | Implementation of the GeometryDefinition class |
+ GeometryDefinition.h | Definition of the GeometryDefinition class |
+ GlobalRenderInformation.cpp | Class for the storage of global render information |
+ GlobalRenderInformation.h | Definition of the GlobalRenderInformation class |
+ GlobalStyle.cpp | Implementation of the GlobalStyle class |
+ GlobalStyle.h | Definition of the GlobalStyle class |
+ GradientBase.cpp | Abstract base class for gradient objects |
+ GradientBase.h | Abstract base class for gradient definitions |
+ GradientStop.cpp | Class representing a stop in a gradient definition |
+ GradientStop.h | Class for representing a stop in a gradient definition |
+ GraphicalObject.cpp | Implementation of GraphicalObject for SBML Layout |
+ GraphicalObject.h | Definition of GraphicalObject for SBML Layout |
+ GraphicalPrimitive1D.cpp | Abstract base class for graphical 1D objects |
+ GraphicalPrimitive1D.h | Definition of the GraphicalPrimitive1D class |
+ GraphicalPrimitive2D.cpp | Implementation of the GraphicalPrimitive2D class |
+ GraphicalPrimitive2D.h | Definition of the GraphicalPrimitive2D class |
+ Group.cpp | Implementation of the Group class |
+ Group.h | Definition of the Group class |
+ GroupsConsistencyValidator.cpp | |
+ GroupsConsistencyValidator.h | |
+ GroupsExtension.cpp | Implementation of GroupsExtension |
+ GroupsExtension.h | Definition of GroupsExtension |
+ GroupsExtensionTypes.h | Definition of GroupsExtensionTypes |
+ groupsfwd.h | Definition of groupsfwd |
+ GroupsIdentifierConsistencyValidator.cpp | |
+ GroupsIdentifierConsistencyValidator.h | |
+ GroupsModelPlugin.cpp | Implementation of the GroupsModelPlugin class |
+ GroupsModelPlugin.h | Definition of the GroupsModelPlugin class |
+ GroupsSBMLDocumentPlugin.cpp | Implementation of the GroupsSBMLDocumentPlugin class |
+ GroupsSBMLDocumentPlugin.h | Definition of the GroupsSBMLDocumentPlugin class |
+ GroupsSBMLError.h | Definition of the GroupsSBMLError class |
+ GroupsSBMLErrorTable.h | Definition of the GroupsSBMLErrorTable class |
+ GroupsValidator.cpp | Definition of GroupsValidator |
+ GroupsValidator.h | Definition of GroupsValidator |
+ IdentifierConsistencyValidator.cpp | |
+ IdentifierConsistencyValidator.h | |
+ IdentifierTransformer.cpp | |
+ IdentifierTransformer.h | |
+ IdFilter.cpp | |
+ IdFilter.h | |
+ IdList.cpp | |
+ IdList.h | |
+ Image.cpp | Implementation of the Image class |
+ Image.h | Definition of the Image class |
+ InitialAssignment.cpp | Implementation of InitialAssignment and ListOfInitialAssignments |
+ InitialAssignment.h | Definitions of InitialAssignment and ListOfInitialAssignments |
+ Input.cpp | Implementation of the Input class |
+ Input.h | Implementation of the Input class |
+ InSpeciesTypeBond.cpp | : Implementation of the InSpeciesTypeBond class |
+ InSpeciesTypeBond.h | : Implementation of the InSpeciesTypeBond class |
+ InteriorPoint.cpp | Implementation of the InteriorPoint class |
+ InteriorPoint.h | Definition of the InteriorPoint class |
+ InternalConsistencyValidator.cpp | |
+ InternalConsistencyValidator.h | |
+ IntraSpeciesReaction.cpp | : Implementation of the IntraSpeciesReaction class |
+ IntraSpeciesReaction.h | : Implementation of the IntraSpeciesReaction class |
+ ISBMLExtensionNamespaces.cpp | |
+ ISBMLExtensionNamespaces.h | |
+ KeyValuePair.cpp | Implementation of the KeyValuePair class |
+ KeyValuePair.h | Definition of the KeyValuePair class |
+ KineticLaw.cpp | Implementation of KineticLaw |
+ KineticLaw.h | Definition of KineticLaw |
+ L1CompatibilityValidator.cpp | |
+ L1CompatibilityValidator.h | |
+ L2v1CompatibilityValidator.cpp | |
+ L2v1CompatibilityValidator.h | |
+ L2v2CompatibilityValidator.cpp | |
+ L2v2CompatibilityValidator.h | |
+ L2v3CompatibilityValidator.cpp | |
+ L2v3CompatibilityValidator.h | |
+ L2v4CompatibilityValidator.cpp | |
+ L2v4CompatibilityValidator.h | |
+ L3FormulaFormatter.cpp | Formats an AST formula tree as an SBML L3 formula string |
+ L3FormulaFormatter.h | Formats an L3 AST formula tree as an SBML formula string |
+ L3Parser.cpp | |
+ L3Parser.h | Definition of the level 3 infix-to-mathml parser C functions |
+ L3ParserSettings.cpp | Definition of the level 3 infix-to-mathml parser settings |
+ L3ParserSettings.h | Definition of the level 3 infix-to-mathml parser settings |
+ L3v1CompatibilityValidator.cpp | |
+ L3v1CompatibilityValidator.h | |
+ L3v2CompatibilityValidator.cpp | |
+ L3v2CompatibilityValidator.h | |
+ Layout.cpp | Implementation of Layout for SBML Layout |
+ Layout.h | Definition of Layout for SBML Layout |
+ LayoutAnnotation.cpp | Layout annotation I/O |
+ LayoutAnnotation.h | Layout annotation I/O |
+ LayoutConsistencyValidator.cpp | |
+ LayoutConsistencyValidator.h | |
+ LayoutExtension.cpp | Implementation of LayoutExtension, the core module of layout package |
+ LayoutExtension.h | Definition of LayoutExtension, the core module of layout package |
+ LayoutExtensionTypes.h | Include all SBML types of layout extension in a single header file |
+ layoutfwd.h | C Structure declarations for SBML Layout |
+ LayoutIdentifierConsistencyValidator.cpp | |
+ LayoutIdentifierConsistencyValidator.h | |
+ LayoutModelPlugin.cpp | Implementation of LayoutModelPlugin, the plugin class of layout package for the Model element |
+ LayoutModelPlugin.h | Definition of LayoutModelPlugin, the plugin class of layout package for Model element |
+ LayoutSBMLDocumentPlugin.cpp | Implementation of the LayoutSBMLDocumentPlugin class |
+ LayoutSBMLDocumentPlugin.h | Implementation of the LayoutSBMLDocumentPlugin class |
+ LayoutSBMLError.h | Implementation of the LayoutSBMLError class |
+ LayoutSBMLErrorTable.h | |
+ LayoutSpeciesReferencePlugin.cpp | Implementation of LayoutSpeciesReferencePlugin, the plugin object of layout package (Level2) for the SpeciesReference and ModifierSpeciesReference elements |
+ LayoutSpeciesReferencePlugin.h | Definition of LayoutSpeciesReferencePlugin, the plugin class of layout package (Level2) for the SpeciesReference and ModifierSpeciesReference elements |
+ LayoutUtilities.cpp | Implementation of some methods used by many of the layout files |
+ LayoutUtilities.h | Definition of LayoutUtilities for SBML Layout |
+ LayoutValidator.cpp | Implementation of the LayoutValidator class |
+ LayoutValidator.h | Implementation of the LayoutValidator class |
+ libsbml-config.h | Decides whether to #include Unix or Windows configuration variables |
+ libsbml-version.cpp | Define libSBML version numbers for access from client software |
+ libsbml-version.h | Define libSBML version numbers for access from client software |
+ LibXMLAttributes.cpp | |
+ LibXMLAttributes.h | |
+ LibXMLHandler.cpp | |
+ LibXMLHandler.h | |
+ LibXMLNamespaces.cpp | Extracts XML namespace declarations from LibXML prefix/URI pairs |
+ LibXMLNamespaces.h | Extracts XML namespace declarations from LibXML prefix/URI pairs |
+ LibXMLParser.cpp | |
+ LibXMLParser.h | |
+ LibXMLTranscode.cpp | |
+ LibXMLTranscode.h | |
+ LinearGradient.cpp | Implementation of the LinearGradient class |
+ LinearGradient.h | Definition of the LinearGradient class |
+ LineEnding.cpp | Class representing line endings,e.g |
+ LineEnding.h | Class representing line endings, e.g |
+ LineSegment.cpp | Implementation of LineSegment for SBML Layout |
+ LineSegment.h | Definition of LineSegment for SBML Layout |
+ List.cpp | Simple, generic list class |
+ List.h | Simple, generic list utility class |
+ ListOf.cpp | Wraps List and inherits from SBase |
+ ListOf.h | |
+ ListOfAdjacentDomains.cpp | Implementation of the ListOfAdjacentDomains class |
+ ListOfAdjacentDomains.h | Definition of the ListOfAdjacentDomains class |
+ ListOfAnalyticVolumes.cpp | Implementation of the ListOfAnalyticVolumes class |
+ ListOfAnalyticVolumes.h | Definition of the ListOfAnalyticVolumes class |
+ ListOfColorDefinitions.cpp | Implementation of the ListOfColorDefinitions class |
+ ListOfColorDefinitions.h | Definition of the ListOfColorDefinitions class |
+ ListOfCoordinateComponents.cpp | Implementation of the ListOfCoordinateComponents class |
+ ListOfCoordinateComponents.h | Definition of the ListOfCoordinateComponents class |
+ ListOfCSGNodes.cpp | Implementation of the ListOfCSGNodes class |
+ ListOfCSGNodes.h | Definition of the ListOfCSGNodes class |
+ ListOfCSGObjects.cpp | Implementation of the ListOfCSGObjects class |
+ ListOfCSGObjects.h | Definition of the ListOfCSGObjects class |
+ ListOfCurveElements.cpp | Storage class for curve elements |
+ ListOfCurveElements.h | Definition of the ListOfCurveElements class |
+ ListOfDeletions.cpp | Implementation of ListOfDeletions |
+ ListOfDeletions.h | Definition of ListOfDeletions, the SBase derived class of deletions package |
+ ListOfDomains.cpp | Implementation of the ListOfDomains class |
+ ListOfDomains.h | Definition of the ListOfDomains class |
+ ListOfDomainTypes.cpp | Implementation of the ListOfDomainTypes class |
+ ListOfDomainTypes.h | Definition of the ListOfDomainTypes class |
+ ListOfDrawables.cpp | Implementation of the ListOfDrawables class |
+ ListOfDrawables.h | Definition of the ListOfDrawables class |
+ ListOfExternalModelDefinitions.cpp | Implementation of ListOfExternalModelDefinitions |
+ ListOfExternalModelDefinitions.h | Definition of ListOfExternalModelDefinitions, the SBase derived class of the Hierarchial Model Defintions package |
+ ListOfGeometryDefinitions.cpp | Implementation of the ListOfGeometryDefinitions class |
+ ListOfGeometryDefinitions.h | Definition of the ListOfGeometryDefinitions class |
+ ListOfGlobalRenderInformation.cpp | Implementation of the ListOfGlobalRenderInformation class |
+ ListOfGlobalRenderInformation.h | Definition of the ListOfGlobalRenderInformation class |
+ ListOfGlobalStyles.cpp | Implementation of the ListOfGlobalStyles class |
+ ListOfGlobalStyles.h | Definition of the ListOfGlobalStyles class |
+ ListOfGradientDefinitions.cpp | Implementation of the ListOfGradientDefinitions class |
+ ListOfGradientDefinitions.h | Definition of the ListOfGradientDefinitions class |
+ ListOfGradientStops.cpp | Implementation of the ListOfGradientStops class |
+ ListOfGradientStops.h | Definition of the ListOfGradientStops class |
+ ListOfGroups.cpp | Implementation of the ListOfGroups class |
+ ListOfGroups.h | Definition of the ListOfGroups class |
+ ListOfInteriorPoints.cpp | Implementation of the ListOfInteriorPoints class |
+ ListOfInteriorPoints.h | Definition of the ListOfInteriorPoints class |
+ ListOfKeyValuePairs.cpp | Implementation of the ListOfKeyValuePairs class |
+ ListOfKeyValuePairs.h | Definition of the ListOfKeyValuePairs class |
+ ListOfLineEndings.cpp | Implementation of the ListOfLineEndings class |
+ ListOfLineEndings.h | Definition of the ListOfLineEndings class |
+ ListOfLocalRenderInformation.cpp | Implementation of the ListOfLocalRenderInformation class |
+ ListOfLocalRenderInformation.h | Definition of the ListOfLocalRenderInformation class |
+ ListOfLocalStyles.cpp | Implementation of the ListOfLocalStyles class |
+ ListOfLocalStyles.h | Definition of the ListOfLocalStyles class |
+ ListOfMembers.cpp | Implementation of the ListOfMembers class |
+ ListOfMembers.h | Definition of the ListOfMembers class |
+ ListOfModelDefinitions.cpp | Implementation of ListOfModelDefinitions from the comp package |
+ ListOfModelDefinitions.h | Definition of ListOfModelDefinitions, the SBase derived class of modelDefinitions package |
+ ListOfOrdinalMappings.cpp | Implementation of the ListOfOrdinalMappings class |
+ ListOfOrdinalMappings.h | Definition of the ListOfOrdinalMappings class |
+ ListOfParametricObjects.cpp | Implementation of the ListOfParametricObjects class |
+ ListOfParametricObjects.h | Definition of the ListOfParametricObjects class |
+ ListOfPorts.cpp | Implementation of ListOfPorts |
+ ListOfPorts.h | Definition of ListOfPorts, the SBase derived class of ports package |
+ ListOfReplacedElements.cpp | Implementation of ListOfReplacedElements from the comp package |
+ ListOfReplacedElements.h | Definition of ListOfReplacedElements, the SBase derived class of replacedElements package |
+ ListOfSampledFields.cpp | Implementation of the ListOfSampledFields class |
+ ListOfSampledFields.h | Definition of the ListOfSampledFields class |
+ ListOfSampledVolumes.cpp | Implementation of the ListOfSampledVolumes class |
+ ListOfSampledVolumes.h | Definition of the ListOfSampledVolumes class |
+ ListOfSubmodels.cpp | Implementation of ListOfSubmodels |
+ ListOfSubmodels.h | Definition of ListOfSubmodels, the SBase derived class of submodels package |
+ ListOfUncertainties.cpp | Implementation of the ListOfUncertainties class |
+ ListOfUncertainties.h | Definition of the ListOfUncertainties class |
+ ListOfUncertParameters.cpp | Implementation of the ListOfUncertParameters class |
+ ListOfUncertParameters.h | Definition of the ListOfUncertParameters class |
+ ListOfUserDefinedConstraintComponents.cpp | Implementation of the ListOfUserDefinedConstraintComponents class |
+ ListOfUserDefinedConstraintComponents.h | Definition of the ListOfUserDefinedConstraintComponents class |
+ ListOfUserDefinedConstraints.cpp | Implementation of the ListOfUserDefinedConstraints class |
+ ListOfUserDefinedConstraints.h | Definition of the ListOfUserDefinedConstraints class |
+ LocalParameter.cpp | Implementations of LocalLocalParameter and ListOfLocalLocalParameters |
+ LocalParameter.h | Definitions of LocalParameter and ListOfLocalParameters |
+ LocalRenderInformation.cpp | Implementation of the LocalRenderInformation class |
+ LocalRenderInformation.h | Definition of the LocalRenderInformation class |
+ LocalStyle.cpp | Class for representing a local style |
+ LocalStyle.h | Definition of the LocalStyle class |
+ MathFilter.cpp | |
+ MathFilter.h | |
+ MathML.cpp | Utilities for reading and writing MathML to/from text strings |
+ MathML.h | Utilities for reading and writing MathML to/from text strings |
+ MathMLConsistencyValidator.cpp | |
+ MathMLConsistencyValidator.h | |
+ Member.cpp | Implementation of the Member class |
+ Member.h | Definition of the Member class |
+ memory.c | |
+ memory.h | |
+ MetaIdFilter.cpp | |
+ MetaIdFilter.h | |
+ MixedGeometry.cpp | Implementation of the MixedGeometry class |
+ MixedGeometry.h | Definition of the MixedGeometry class |
+ Model.cpp | Implementation of Model |
+ Model.h | Definition of Model |
+ ModelCreator.cpp | ModelCreator I/O |
+ ModelCreator.h | ModelCreator I/O |
+ ModelDefinition.cpp | Implementation of ModelDefinition, the SBase-derived class of the comp package |
+ ModelDefinition.h | Definition of ModelDefinition, the SBase derived class of the comp package |
+ ModelHistory.cpp | ModelHistory I/O |
+ ModelHistory.h | ModelHistory I/O |
+ ModelingPracticeValidator.cpp | |
+ ModelingPracticeValidator.h | |
+ ModifierSpeciesReference.cpp | Implementation of ModifierSpeciesReference |
+ ModifierSpeciesReference.h | Definitions of ModifierSpeciesReference |
+ MultiASTPlugin.cpp | Implementation of MultiASTPlugin, the plugin class of multi package for the AST element |
+ MultiASTPlugin.h | Definition of MultiASTPlugin, the plugin class of multi package for the AST element |
+ MultiCompartmentPlugin.cpp | : Implementation of the MultiCompartmentPlugin class |
+ MultiCompartmentPlugin.h | : Implementation of the MultiCompartmentPlugin class |
+ MultiConsistencyValidator.cpp | |
+ MultiConsistencyValidator.h | |
+ MultiExtension.cpp | : Implementation of the MultiExtension class |
+ MultiExtension.h | : Implementation of the MultiExtension class |
+ MultiExtensionTypes.h | : Implementation of the MultiExtensionTypes class |
+ multifwd.h | : Implementation of the multifwd class |
+ MultiIdentifierConsistencyValidator.cpp | |
+ MultiIdentifierConsistencyValidator.h | |
+ MultiListOfReactionsPlugin.cpp | : Implementation of the MultiListOfReactionsPlugin class |
+ MultiListOfReactionsPlugin.h | : Implementation of the MultiListOfReactionsPlugin class |
+ MultiMathMLConsistencyValidator.cpp | |
+ MultiMathMLConsistencyValidator.h | |
+ MultiModelPlugin.cpp | : Implementation of the MultiModelPlugin class |
+ MultiModelPlugin.h | : Implementation of the MultiModelPlugin class |
+ MultiSBMLDocumentPlugin.cpp | : Implementation of the MultiSBMLDocumentPlugin class |
+ MultiSBMLDocumentPlugin.h | : Implementation of the MultiSBMLDocumentPlugin class |
+ MultiSBMLError.h | : Implementation of the MultiSBMLError class |
+ MultiSBMLErrorTable.h | : Implementation of the MultiSBMLErrorTable class |
+ MultiSimpleSpeciesReferencePlugin.cpp | : Implementation of the MultiSimpleSpeciesReferencePlugin class |
+ MultiSimpleSpeciesReferencePlugin.h | : Implementation of the MultiSimpleSpeciesReferencePlugin class |
+ MultiSpeciesPlugin.cpp | : Implementation of the MultiSpeciesPlugin class |
+ MultiSpeciesPlugin.h | : Implementation of the MultiSpeciesPlugin class |
+ MultiSpeciesReferencePlugin.cpp | : Implementation of the MultiSpeciesReferencePlugin class |
+ MultiSpeciesReferencePlugin.h | : Implementation of the MultiSpeciesReferencePlugin class |
+ MultiSpeciesType.cpp | : Implementation of the MultiSpeciesType class |
+ MultiSpeciesType.h | : Implementation of the MultiSpeciesType class |
+ MultiValidator.cpp | : Implementation of the MultiValidator class |
+ MultiValidator.h | : Implementation of the MultiValidator class |
+ Objective.cpp | Implementation of the Objective class |
+ Objective.h | Definition of Objective, the SBase derived class of the fbc package |
+ operationReturnValues.cpp | Enumeration of values returned by operations within libSBML |
+ operationReturnValues.h | Enumeration of values returned by operations within libSBML |
+ OrdinalMapping.cpp | Implementation of the OrdinalMapping class |
+ OrdinalMapping.h | Definition of the OrdinalMapping class |
+ Output.cpp | Implementation of the Output class |
+ Output.h | Implementation of the Output class |
+ OutwardBindingSite.cpp | : Implementation of the OutwardBindingSite class |
+ OutwardBindingSite.h | : Implementation of the OutwardBindingSite class |
+ OverdeterminedValidator.cpp | |
+ OverdeterminedValidator.h | |
+ Parameter.cpp | Implementations of Parameter and ListOfParameters |
+ Parameter.h | Definitions of Parameter and ListOfParameters |
+ ParametricGeometry.cpp | Implementation of the ParametricGeometry class |
+ ParametricGeometry.h | Definition of the ParametricGeometry class |
+ ParametricObject.cpp | Implementation of the ParametricObject class |
+ ParametricObject.h | Definition of the ParametricObject class |
+ Point.cpp | Implementation of Point for SBML Layout |
+ Point.h | Definition of Point for SBML Layout |
+ Polygon.cpp | Implementation of the Polygon class |
+ Polygon.h | Class representing a polygon |
+ Port.cpp | Implementation of Port, the SBase-derived class of the comp package |
+ Port.h | Definition of Port, the SBase derived class of the comp package |
+ PossibleSpeciesFeatureValue.cpp | : Implementation of the PossibleSpeciesFeatureValue class |
+ PossibleSpeciesFeatureValue.h | : Implementation of the PossibleSpeciesFeatureValue class |
+ PrefixTransformer.cpp | |
+ PrefixTransformer.h | |
+ Priority.cpp | Implementation of Priority |
+ Priority.h | Definition of Priority |
+ QualConsistencyValidator.cpp | |
+ QualConsistencyValidator.h | |
+ QualExtension.cpp | Implementation of QualExtension, the core module of qual package |
+ QualExtension.h | Definition of QualExtension, the core module of qual package |
+ QualExtensionTypes.h | Include all SBML types of qual extension in a single header file |
+ qualfwd.h | SBML Qual C structure declarations |
+ QualIdentifierConsistencyValidator.cpp | |
+ QualIdentifierConsistencyValidator.h | |
+ QualitativeSpecies.cpp | Implementation of the QualitativeSpecies class |
+ QualitativeSpecies.h | Implementation of the QualitativeSpecies class |
+ QualMathConsistencyValidator.cpp | |
+ QualMathConsistencyValidator.h | |
+ QualModelPlugin.cpp | Implementation of QualModelPlugin, the plugin class of qual package for the Model element |
+ QualModelPlugin.h | Definition of QualModelPlugin, the plugin class of qual package for the Model element |
+ QualSBMLDocumentPlugin.cpp | Implementation of QualSBMLDocumentPlugin, the plugin class of qual package for the SBase element |
+ QualSBMLDocumentPlugin.h | Implementation of the QualSBMLDocumentPlugin class |
+ QualSBMLError.h | Represents SBML errors and other diagnostics |
+ QualSBMLErrorTable.h | Represents SBML errors and other diagnostics |
+ QualValidator.cpp | Base class for SBML Validators |
+ QualValidator.h | Implementation of the QualValidator class |
+ RadialGradient.cpp | Implementation of the RadialGradient class |
+ RadialGradient.h | Definition of the RadialGradient class |
+ RateRule.cpp | Implementations of RateRule |
+ RateRule.h | Definitions of RateRule |
+ RDFAnnotation.h | RDFAnnotation I/O |
+ RDFAnnotationParser.cpp | RDFAnnotation I/O |
+ RDFAnnotationParser.h | RDFAnnotation I/O |
+ Reaction.cpp | Implementations of Reaction and ListOfReactions |
+ Reaction.h | Definitions of Reaction and ListOfReactions |
+ ReactionGlyph.cpp | Implementation of ReactionGlyph for SBML Layout |
+ ReactionGlyph.h | Definition of ReactionGlyph for SBML Layout |
+ Rectangle.cpp | Implementation of the Rectangle class |
+ Rectangle.h | Definition of the Rectangle class |
+ ReferenceGlyph.cpp | Implementation of ReferenceGlyph for SBML Layout |
+ ReferenceGlyph.h | Definition of ReferenceGlyph for SBML Layout |
+ RegisterConverters.cpp | Registers all available converters |
+ RelAbsVector.cpp | Class for representing coordinates that can have a relative and an absolute part |
+ RelAbsVector.h | Definition of the RelAbsVector class |
+ RenderConsistencyValidator.cpp | |
+ RenderConsistencyValidator.h | |
+ RenderCubicBezier.cpp | Implementation of the RenderCubicBezier class |
+ RenderCubicBezier.h | Definition of the RenderCubicBezier class |
+ RenderCurve.cpp | Implementation of the RenderCurve class |
+ RenderCurve.h | Definition of the RenderCurve class |
+ RenderExtension.cpp | Implementation of RenderExtension, the core module of the render package |
+ RenderExtension.h | Definition of RenderExtension, the core module of the render package |
+ RenderExtensionTypes.h | Definition of RenderExtensionTypes |
+ renderfwd.h | Definition of renderfwd |
+ RenderGraphicalObjectPlugin.cpp | Implementation of RenderGraphicalObjectPlugin, the plugin class of the render package for the GraphicalObject element |
+ RenderGraphicalObjectPlugin.h | Definition of RenderGraphicalObjectPlugin, the plugin class of the render package for the GraphicalObject element |
+ RenderGroup.cpp | Implementation of the RenderGroup class |
+ RenderGroup.h | Definition of the RenderGroup class |
+ RenderIdentifierConsistencyValidator.cpp | |
+ RenderIdentifierConsistencyValidator.h | |
+ RenderInformationBase.cpp | Implementation of the RenderInformationBase class |
+ RenderInformationBase.h | Definition of the RenderInformationBase class |
+ RenderLayoutConverter.cpp | Simple converter to convert Layout + Render from l2 to L3 and vice versa |
+ RenderLayoutConverter.h | Simple converter to convert Layout + Render from l2 to L3 and vice versa |
+ RenderLayoutPlugin.cpp | Implementation of RenderLayoutPlugin, the plugin class of the fbc package for the Model element |
+ RenderLayoutPlugin.h | Definition of RenderLayoutPlugin, the plugin class of fbc package for the Model element |
+ RenderListOfLayoutsPlugin.cpp | Implementation of RenderListOfLayoutsPlugin, the plugin class of the fbc package for the Model element |
+ RenderListOfLayoutsPlugin.h | Definition of RenderListOfLayoutsPlugin, the plugin class of fbc package for the Model element |
+ RenderPoint.cpp | Implementation of the RenderPoint class |
+ RenderPoint.h | Definition of the RenderPoint class |
+ RenderSBMLDocumentPlugin.cpp | Implementation of the RenderSBMLDocumentPlugin class |
+ RenderSBMLDocumentPlugin.h | Definition of the RenderSBMLDocumentPlugin class |
+ RenderSBMLError.h | Definition of the RenderSBMLError class |
+ RenderSBMLErrorTable.h | Definition of the RenderSBMLErrorTable class |
+ RenderUtilities.cpp | Implementation of RenderUtilities, a class of utility functions for the render package |
+ RenderUtilities.h | Definition of RenderUtilities, a class of utility functions for the render package |
+ RenderValidator.cpp | Definition of RenderValidator |
+ RenderValidator.h | Definition of RenderValidator |
+ ReplacedBy.cpp | Implementation of ReplacedBy, the SBaseRef derived class of the comp package |
+ ReplacedBy.h | Definition of ReplacedBy, the Replacing-derived class of the comp package |
+ ReplacedElement.cpp | Implementation of ReplacedElement, the SBaseRef derived class of replacedElements package |
+ ReplacedElement.h | Definition of ReplacedElement, the SBase derived class of replacedElements package |
+ Replacing.cpp | Implementation of Replacing, the SBaseRef derived class of Replacings package |
+ Replacing.h | Definition of Replacing, the SBaseRef-derived class of the comp package |
+ Rule.cpp | Implementations of Rule and ListOfRules |
+ Rule.h | Definitions of Rule and ListOfRules |
+ SampledField.cpp | Implementation of the SampledField class |
+ SampledField.h | Definition of the SampledField class |
+ SampledFieldGeometry.cpp | Implementation of the SampledFieldGeometry class |
+ SampledFieldGeometry.h | Definition of the SampledFieldGeometry class |
+ SampledVolume.cpp | Implementation of the SampledVolume class |
+ SampledVolume.h | Definition of the SampledVolume class |
+ SBase.cpp | Implementation of SBase, the base object of all SBML objects |
+ SBase.h | Definition of SBase, the base object of all SBML objects |
+ SBaseExtensionPoint.cpp | Implementation of SBaseExtensionPoint |
+ SBaseExtensionPoint.h | Definition of SBaseExtensionPoint |
+ SBasePlugin.cpp | Implementation of SBasePlugin, the base class of extension entities plugged in SBase derived classes in the SBML Core package |
+ SBasePlugin.h | Definition of SBasePlugin, the base class of extension entities plugged in SBase derived classes in the SBML Core package |
+ SBasePluginCreator.h | Template class for SBasePlugin-based classes |
+ SBasePluginCreatorBase.cpp | Implementation of SBasePluginCreatorBase, the base class of SBasePlugin creator classes |
+ SBasePluginCreatorBase.h | Definition of SBasePluginCreatorBase, the base class of SBasePlugin creator classes |
+ SBaseRef.cpp | Implementation of SBaseRef, the SBase-derived class of the comp package |
+ SBaseRef.h | Definition of SBaseRef, the SBase derived class of the comp package |
+ SBMLConstructorException.cpp | Implementation of SBMLConstructorException, the exception class for constructor exceptions |
+ SBMLConstructorException.h | Definition of SBMLConstructorException, the exception class for constructor exceptions |
+ SBMLConvert.cpp | Performs conversion between SBML levels |
+ SBMLConverter.cpp | Implementation of SBMLConverter, the base class of package extensions |
+ SBMLConverter.h | Definition of SBMLConverter, the base class for SBML conversion |
+ SBMLConverterRegister.h | Definition of SBMLConverterRegister, a template to register converters |
+ SBMLConverterRegistry.cpp | Implementation of SBMLConverterRegistry, a registry of available converters |
+ SBMLConverterRegistry.h | Definition of SBMLConverterRegistry, a registry of available converters |
+ SBMLConverterTypes.h | Definition of SBMLConverterTypes |
+ SBMLDocument.cpp | Implementation of the top-level container for an SBML Model and associated data |
+ SBMLDocument.h | Top-level container for an SBML Model and associated data |
+ SBMLDocumentPlugin.cpp | Implementation of SBMLDocumentPlugin, the derived class of SBasePlugin |
+ SBMLDocumentPlugin.h | Definition of SBMLDocumentPlugin, the derived class of SBasePlugin |
+ SBMLDocumentPluginNotRequired.cpp | Implementation of SBMLDocumentPluginNotRequired, the plugin class of layout package for the Model element |
+ SBMLDocumentPluginNotRequired.h | Definition of SBMLDocumentPluginNotRequired, the plugin class of layout package for the SBMLDocument element, whose 'required' attribute must be 'false' |
+ SBMLError.cpp | Represents SBML errors and other diagnostics |
+ SBMLError.h | Represents SBML errors and other diagnostics |
+ SBMLErrorLog.cpp | Stores errors (and messages) encountered while processing SBML |
+ SBMLErrorLog.h | Stores errors (and messages) encountered while processing SBML |
+ SBMLErrorTable.h | Represents SBML errors and other diagnostics |
+ SBMLExtension.cpp | Implementation of SBMLExtension, the base class of package extensions |
+ SBMLExtension.h | Definition of SBMLExtension, the core component of SBML package extension |
+ SBMLExtensionException.cpp | SBMLExtensionException class, the exception class for package extension |
+ SBMLExtensionException.h | Class of exceptions thrown in some situations |
+ SBMLExtensionNamespaces.cpp | Implementation of C-API for the SBMLExtensionNamespaces class |
+ SBMLExtensionNamespaces.h | Class to store the SBML Level, Version and namespace of a package |
+ SBMLExtensionRegister.h | Template class for registering extension packages |
+ SBMLExtensionRegistry.cpp | Implementation of SBMLExtensionRegistry, the registry class in which extension packages are registered |
+ SBMLExtensionRegistry.h | The registry class for tracking package extensions |
+ SBMLExternalValidator.cpp | |
+ SBMLExternalValidator.h | |
+ SBMLFileResolver.cpp | Implementation of SBMLFileResolver, the file system based resolver for SBML Documents |
+ SBMLFileResolver.h | A file-based resolver for SBML Documents |
+ SBMLFunctionDefinitionConverter.cpp | Implementation of SBMLFunctionDefinitionConverter, a converter replacing function definitions |
+ SBMLFunctionDefinitionConverter.h | Definition of SBMLFunctionDefinitionConverter, a converter replacing function definitions |
+ sbmlfwd.h | Forward declarations for all opaque C types |
+ SBMLIdConverter.cpp | Implementation of SBMLIdConverter, a converter renaming SIds |
+ SBMLIdConverter.h | Definition of SBMLIdConverter, a converter renaming SIds |
+ SBMLInferUnitsConverter.cpp | Implementation of SBMLInferUnitsConverter |
+ SBMLInferUnitsConverter.h | Definition of SBMLInferUnitsConverter, infers units for parameters |
+ SBMLInitialAssignmentConverter.cpp | Implementation of SBMLInitialAssignmentConverter, a converter inlining initial assignments |
+ SBMLInitialAssignmentConverter.h | Definition of SBMLInitialAssignmentConverter, a converter inlining function definitions |
+ SBMLInternalValidator.cpp | Implementation of SBMLInternalValidator, the validator for all internal validation performed by libSBML |
+ SBMLInternalValidator.h | Definition of SBMLInternalValidator, the validator for all internal validation performed by libSBML |
+ SBMLLevel1Version1Converter.cpp | Implementation of SBMLLevel1Version1Converter |
+ SBMLLevel1Version1Converter.h | Definition of SBMLLevel1Version1Converter |
+ SBMLLevelVersionConverter.cpp | Implementation of SBMLLevelVersionConverter, the base class of package extensions |
+ SBMLLevelVersionConverter.h | Definition of SBMLLevelVersionConverter, the base class for SBML conversion |
+ SBMLLocalParameterConverter.cpp | Implementation of SBMLLocalParameterConverter, a converter replacing local parameters with global ones |
+ SBMLLocalParameterConverter.h | Definition of SBMLLocalParameterConverter, a converter replacing local parameters with global ones |
+ SBMLNamespaces.cpp | SBMLNamespaces class to store level/version and namespace |
+ SBMLNamespaces.h | SBMLNamespaces class to store level/version and namespace |
+ SBMLRateOfConverter.cpp | Implementation of SBMLRateOfConverter, a converter changing 'rateOf' into functionDefinition |
+ SBMLRateOfConverter.h | Definition of SBMLRateOfConverter, a converter changing reactions into rate rules |
+ SBMLRateRuleConverter.cpp | Implementation of SBMLRateRuleConverter, a converter from raterule to reaction |
+ SBMLRateRuleConverter.h | Definition of SBMLRateRuleConverter, a converter from raterule to reaction |
+ SBMLReactionConverter.cpp | Implementation of SBMLReactionConverter, a converter changing reactions into rate rules |
+ SBMLReactionConverter.h | Definition of SBMLReactionConverter, a converter changing reactions into rate rules |
+ SBMLReader.cpp | Reads an SBML Document into memory |
+ SBMLReader.h | Reads an SBML Document into memory |
+ SBMLResolver.cpp | Implementation of SBMLResolver, the base class of package extensions |
+ SBMLResolver.h | Definition of SBMLResolver, the base class for resolving SBML documents |
+ SBMLResolverRegistry.cpp | Implementation of SBMLResolverRegistry, a registry of available resolvers |
+ SBMLResolverRegistry.h | Definition of SBMLResolverRegistry, a registry of available resolvers |
+ SBMLRuleConverter.cpp | Implementation of SBMLRuleConverter, a converter sorting rules |
+ SBMLRuleConverter.h | Definition of SBMLRuleConverter, a converter sorting rules |
+ SBMLStripPackageConverter.cpp | Implementation of SBMLStripPackageConverter, the base class of package extensions |
+ SBMLStripPackageConverter.h | Definition of SBMLStripPackageConverter, the base class for SBML conversion |
+ SBMLTransforms.cpp | Transform functions |
+ SBMLTransforms.h | |
+ SBMLTypeCodes.cpp | Enumeration to identify SBML objects at runtime |
+ SBMLTypeCodes.h | Enumeration to identify SBML objects at runtime |
+ SBMLTypes.h | Include all SBML types in a single header file |
+ SBMLUnitsConverter.cpp | Implementation of SBMLUnitsConverter, for converting units to SI |
+ SBMLUnitsConverter.h | Definition of SBMLUnitsConverter, for converting units to SI |
+ SBMLUri.cpp | Implementation of SBMLUri, the utility class for handling uris |
+ SBMLUri.h | Definition of SBMLUri, the utility class for handling URIs |
+ SBMLValidator.cpp | Implementation of SBMLValidator, the base class for user callable SBML validators |
+ SBMLValidator.h | Definition of SBMLValidator, the base class for user callable SBML validators |
+ SBMLVisitor.cpp | Visitor Design Pattern for the SBML object tree |
+ SBMLVisitor.h | Visitor Design Pattern for the SBML object tree |
+ SBMLWriter.cpp | Writes an SBML Document to file or in-memory string |
+ SBMLWriter.h | Writes an SBML Document to file or in-memory string |
+ SBO.cpp | SBO utility functions |
+ SBO.h | SBO utility Function |
+ SBOConsistencyValidator.cpp | |
+ SBOConsistencyValidator.h | |
+ SimpleSpeciesReference.cpp | Implementation of SimpleSpeciesReference |
+ SimpleSpeciesReference.h | Definitions of SimpleSpeciesReference |
+ SpatialCompartmentMappingUnitSizesCheck.cpp | |
+ SpatialCompartmentMappingUnitSizesCheck.h | |
+ SpatialCompartmentPlugin.cpp | Implementation of the SpatialCompartmentPlugin class |
+ SpatialCompartmentPlugin.h | Definition of the SpatialCompartmentPlugin class |
+ SpatialConsistencyValidator.cpp | |
+ SpatialConsistencyValidator.h | |
+ SpatialExtension.cpp | Implementation of SpatialExtension |
+ SpatialExtension.h | Definition of SpatialExtension |
+ SpatialExtensionTypes.h | Definition of SpatialExtensionTypes |
+ spatialfwd.h | Definition of spatialfwd |
+ SpatialIdentifierConsistencyValidator.cpp | |
+ SpatialIdentifierConsistencyValidator.h | |
+ SpatialModelPlugin.cpp | Implementation of the SpatialModelPlugin class |
+ SpatialModelPlugin.h | Definition of the SpatialModelPlugin class |
+ SpatialOrdinalMappingGeometryDefinitionCheck.cpp | |
+ SpatialOrdinalMappingGeometryDefinitionCheck.h | |
+ SpatialParameterPlugin.cpp | Implementation of the SpatialParameterPlugin class |
+ SpatialParameterPlugin.h | Definition of the SpatialParameterPlugin class |
+ SpatialPoints.cpp | Implementation of the SpatialPoints class |
+ SpatialPoints.h | Definition of the SpatialPoints class |
+ SpatialReactionPlugin.cpp | Implementation of the SpatialReactionPlugin class |
+ SpatialReactionPlugin.h | Definition of the SpatialReactionPlugin class |
+ SpatialSampledVolumeRangeOverlapCheck.cpp | |
+ SpatialSampledVolumeRangeOverlapCheck.h | |
+ SpatialSampledVolumeValueNotInRangeCheck.cpp | |
+ SpatialSampledVolumeValueNotInRangeCheck.h | |
+ SpatialSBMLDocumentPlugin.cpp | Implementation of the SpatialSBMLDocumentPlugin class |
+ SpatialSBMLDocumentPlugin.h | Definition of the SpatialSBMLDocumentPlugin class |
+ SpatialSBMLError.h | Definition of the SpatialSBMLError class |
+ SpatialSBMLErrorTable.h | Definition of the SpatialSBMLErrorTable class |
+ SpatialSpatialSymbolReferenceUniqueRefCheck.cpp | |
+ SpatialSpatialSymbolReferenceUniqueRefCheck.h | |
+ SpatialSpeciesPlugin.cpp | Implementation of the SpatialSpeciesPlugin class |
+ SpatialSpeciesPlugin.h | Definition of the SpatialSpeciesPlugin class |
+ SpatialSymbolReference.cpp | Implementation of the SpatialSymbolReference class |
+ SpatialSymbolReference.h | Definition of the SpatialSymbolReference class |
+ SpatialUniqueAdvectionCoefficientsCheck.cpp | |
+ SpatialUniqueAdvectionCoefficientsCheck.h | |
+ SpatialUniqueAnalyticVolumeOrdinalsCheck.cpp | |
+ SpatialUniqueAnalyticVolumeOrdinalsCheck.h | |
+ SpatialUniqueBoundaryConditionsCheck.cpp | |
+ SpatialUniqueBoundaryConditionsCheck.h | |
+ SpatialUniqueCSGObjectOrdinalsCheck.cpp | |
+ SpatialUniqueCSGObjectOrdinalsCheck.h | |
+ SpatialUniqueDiffusionCoefficientsCheck.cpp | |
+ SpatialUniqueDiffusionCoefficientsCheck.h | |
+ SpatialUniqueOrdinalMappingOrdinalsCheck.cpp | |
+ SpatialUniqueOrdinalMappingOrdinalsCheck.h | |
+ SpatialUniqueSampledVolumeValueCheck.cpp | |
+ SpatialUniqueSampledVolumeValueCheck.h | |
+ SpatialValidator.cpp | Definition of SpatialValidator |
+ SpatialValidator.h | Definition of SpatialValidator |
+ Species.cpp | Implementations of Species and ListOfSpecies |
+ Species.h | Definitions of Species and ListOfSpecies |
+ SpeciesFeature.cpp | : Implementation of the SpeciesFeature class |
+ SpeciesFeature.h | : Implementation of the SpeciesFeature class |
+ SpeciesFeatureType.cpp | : Implementation of the SpeciesFeatureType class |
+ SpeciesFeatureType.h | : Implementation of the SpeciesFeatureType class |
+ SpeciesFeatureValue.cpp | : Implementation of the SpeciesFeatureValue class |
+ SpeciesFeatureValue.h | : Implementation of the SpeciesFeatureValue class |
+ SpeciesGlyph.cpp | Implementation of SpeciesGlyph for SBML Layout |
+ SpeciesGlyph.h | Definition of SpeciesGlyph for SBML Layout |
+ SpeciesReference.cpp | Implementation of SpeciesReference and ListOfSpeciesReferences |
+ SpeciesReference.h | Definitions of SpeciesReference and ListOfSpeciesReferences |
+ SpeciesReferenceGlyph.cpp | Implementation of SpeciesReferenceGlyph for SBML Layout |
+ SpeciesReferenceGlyph.h | Definition of SpeciesReferenceGlyph for SBML Layout |
+ SpeciesReferenceRole.h | Definition of SpeciesReferenceRole enum for SBML Layout |
+ SpeciesType.cpp | Implementation of SpeciesType and ListOfSpeciesTypes |
+ SpeciesType.h | Definitions of SpeciesType and ListOfSpeciesType |
+ SpeciesTypeComponentIndex.cpp | : Implementation of the SpeciesTypeComponentIndex class |
+ SpeciesTypeComponentIndex.h | : Implementation of the SpeciesTypeComponentIndex class |
+ SpeciesTypeComponentMapInProduct.cpp | : Implementation of the SpeciesTypeComponentMapInProduct class |
+ SpeciesTypeComponentMapInProduct.h | : Implementation of the SpeciesTypeComponentMapInProduct class |
+ SpeciesTypeInstance.cpp | : Implementation of the SpeciesTypeInstance class |
+ SpeciesTypeInstance.h | : Implementation of the SpeciesTypeInstance class |
+ Stack.c | |
+ Stack.h | |
+ StoichiometryMath.cpp | Implementation of StoichiometryMath |
+ StoichiometryMath.h | Definition of StoichiometryMath |
+ StrictUnitConsistencyValidator.cpp | |
+ StrictUnitConsistencyValidator.h | |
+ StringBuffer.c | |
+ StringBuffer.h | |
+ Style.cpp | Implementation of the Style class |
+ Style.h | Definition of the Style class |
+ SubListOfSpeciesFeatures.cpp | : Implementation of the SubListOfSpeciesFeatures class |
+ SubListOfSpeciesFeatures.h | : Implementation of the SubListOfSpeciesFeatures class |
+ Submodel.cpp | Implementation of Submodel, the SBase-derived class of the comp package |
+ Submodel.h | Definition of Submodel, the SBase derived class of the comp package |
+ SyntaxChecker.cpp | Syntax checking functions |
+ SyntaxChecker.h | Syntax checking functions |
+ Text.cpp | Implementation of the Text class |
+ Text.h | Definition of the Text class |
+ TextGlyph.cpp | Implementation of TextGlyph for SBML Layout |
+ TextGlyph.h | Definition of TextGlyph for SBML Layout |
+ Transformation.cpp | Class representing a 3D affine transformation |
+ Transformation.h | Abstract class for representing 3D affine transformations |
+ Transformation2D.cpp | Class representing a 2D affine transformation |
+ Transformation2D.h | Abstract base class for representing 2D affine transformations |
+ TransformationComponent.cpp | Implementation of the TransformationComponent class |
+ TransformationComponent.h | Definition of the TransformationComponent class |
+ Transition.cpp | Implementation of the Transition class |
+ Transition.h | Implementation of the Transition class |
+ Trigger.cpp | Implementation of Trigger |
+ Trigger.h | Definition of Trigger |
+ Uncertainty.cpp | Implementation of the Uncertainty class |
+ Uncertainty.h | Definition of the Uncertainty class |
+ UncertParameter.cpp | Implementation of the UncertParameter class |
+ UncertParameter.h | Definition of the UncertParameter class |
+ UncertSpan.cpp | Implementation of the UncertSpan class |
+ UncertSpan.h | Definition of the UncertSpan class |
+ Unit.cpp | Implementations of Unit and ListOfUnits |
+ Unit.h | Definitions of Unit and ListOfUnits |
+ UnitConsistencyValidator.cpp | |
+ UnitConsistencyValidator.h | |
+ UnitDefinition.cpp | Implementations of SBML's UnitDefinition and ListOfUnitDefinitions |
+ UnitDefinition.h | Definitions of UnitDefinition and ListOfUnitDefinitions |
+ UnitKind.c | SBML UnitKind enumeration |
+ UnitKind.h | Definition of SBML's UnitKind enumeration |
+ UserDefinedConstraint.cpp | Implementation of the UserDefinedConstraint class |
+ UserDefinedConstraint.h | Definition of the UserDefinedConstraint class |
+ UserDefinedConstraintComponent.cpp | Implementation of the UserDefinedConstraintComponent class |
+ UserDefinedConstraintComponent.h | Definition of the UserDefinedConstraintComponent class |
+ util.cpp | Utility functions |
+ util.h | Utility functions |
+ Validator.cpp | Base class for SBML Validators |
+ Validator.h | Base class for SBML Validators |
+ VConstraint.cpp | Base class for all SBML Validator Constraints |
+ VConstraint.h | Base class for all SBML Validator Constraints |
+ XercesAttributes.cpp | |
+ XercesAttributes.h | |
+ XercesHandler.cpp | |
+ XercesHandler.h | |
+ XercesNamespaces.cpp | |
+ XercesNamespaces.h | |
+ XercesParser.cpp | |
+ XercesParser.h | |
+ XercesTranscode.cpp | |
+ XercesTranscode.h | |
+ XMLAttributes.cpp | XMLAttributes are a list of name/value pairs for XMLElements |
+ XMLAttributes.h | XMLAttributes are a list of name/value pairs for XML elements |
+ XMLBuffer.cpp | |
+ XMLBuffer.h | |
+ XMLConstructorException.cpp | XMLConstructorException an exception thrown by XML classes |
+ XMLConstructorException.h | XMLConstructorException an exception thrown by XML classes |
+ XMLError.cpp | Represents errors (and messages) encountered during an XML parse |
+ XMLError.h | Represents errors (and messages) encountered during an XML parse |
+ XMLErrorLog.cpp | Stores errors (and messages) encountered while processing XML |
+ XMLErrorLog.h | Stores errors (and messages) encountered while processing XML |
+ XMLExtern.h | Defines LIBLAX_EXTERN |
+ XMLFileBuffer.cpp | |
+ XMLFileBuffer.h | |
+ XMLHandler.cpp | |
+ XMLHandler.h | |
+ XMLInputStream.cpp | |
+ XMLInputStream.h | XMLInputStream |
+ XMLLogOverride.cpp | Utility class implementing a temporary override the severity on error logs |
+ XMLLogOverride.h | Utility class implementing a temporary override the severity on error logs |
+ XMLMemoryBuffer.cpp | |
+ XMLMemoryBuffer.h | |
+ XMLNamespaces.cpp | A list of XMLNamespace declarations (URI/prefix pairs) |
+ XMLNamespaces.h | A list of XMLNamespace declarations (URI/prefix pairs) |
+ XMLNode.cpp | A node in an XML document tree |
+ XMLNode.h | Class definition of XMLNode, a node in an XML document tree |
+ XMLOutputStream.cpp | |
+ XMLOutputStream.h | XMLOutputStream |
+ XMLParser.cpp | |
+ XMLParser.h | |
+ XMLToken.cpp | A unit of XML syntax, either an XML element or text |
+ XMLToken.h | A unit of XML syntax, either an XML element or text |
+ XMLTokenizer.cpp | |
+ XMLTokenizer.h | |
+ XMLTriple.cpp | Stores an XML namespace triple |
+ XMLTriple.h | Stores an XML namespace triple |
diff --git a/files_dup.js b/files_dup.js
index 9f4a170e7..d02aca430 100644
--- a/files_dup.js
+++ b/files_dup.js
@@ -142,12 +142,16 @@ var files_dup =
[ "distribfwd.h", "distribfwd_8h.html", "distribfwd_8h" ],
[ "DistribIdentifierConsistencyValidator.cpp", "_distrib_identifier_consistency_validator_8cpp.html", null ],
[ "DistribIdentifierConsistencyValidator.h", "_distrib_identifier_consistency_validator_8h.html", null ],
+ [ "DistribMathMLConsistencyValidator.cpp", "_distrib_math_m_l_consistency_validator_8cpp.html", null ],
+ [ "DistribMathMLConsistencyValidator.h", "_distrib_math_m_l_consistency_validator_8h.html", null ],
[ "DistribSBasePlugin.cpp", "_distrib_s_base_plugin_8cpp.html", "_distrib_s_base_plugin_8cpp" ],
[ "DistribSBasePlugin.h", "_distrib_s_base_plugin_8h.html", null ],
[ "DistribSBMLDocumentPlugin.cpp", "_distrib_s_b_m_l_document_plugin_8cpp.html", null ],
[ "DistribSBMLDocumentPlugin.h", "_distrib_s_b_m_l_document_plugin_8h.html", null ],
[ "DistribSBMLError.h", "_distrib_s_b_m_l_error_8h.html", "_distrib_s_b_m_l_error_8h" ],
[ "DistribSBMLErrorTable.h", "_distrib_s_b_m_l_error_table_8h.html", null ],
+ [ "DistribUnitConsistencyValidator.cpp", "_distrib_unit_consistency_validator_8cpp.html", null ],
+ [ "DistribUnitConsistencyValidator.h", "_distrib_unit_consistency_validator_8h.html", null ],
[ "DistribValidator.cpp", "_distrib_validator_8cpp.html", null ],
[ "DistribValidator.h", "_distrib_validator_8h.html", null ],
[ "Domain.cpp", "_domain_8cpp.html", "_domain_8cpp" ],
diff --git a/globals_d.html b/globals_d.html
index e2f1dac53..cf26b969b 100644
--- a/globals_d.html
+++ b/globals_d.html
@@ -558,8 +558,8 @@ - d -
, LayoutAnnotation.h
- deleteLocalRenderAnnotation()
-: RenderUtilities.h
-, RenderUtilities.cpp
+: RenderUtilities.cpp
+, RenderUtilities.h
- DeleteStringChild()
: SBMLExtensionRegistry.cpp
@@ -656,8 +656,8 @@
- d -
- DiffusionKind_isValid()
-: SpatialExtension.h
-, SpatialExtension.cpp
+: SpatialExtension.cpp
+, SpatialExtension.h
- DiffusionKind_isValidString()
: SpatialExtension.cpp
@@ -830,6 +830,9 @@
- d -
- DistribIdSyntaxRule
: DistribSBMLError.h
+- DistribMathnumber
+: DistribSBMLError.h
+
- DistribNSUndeclared
: DistribSBMLError.h
@@ -932,6 +935,9 @@ - d -
- DistribUncertSpanVarUpperMustBeSBase
: DistribSBMLError.h
+- DistribUnitsRule
+: DistribSBMLError.h
+
- DistribUnknown
: DistribSBMLError.h
diff --git a/globals_eval_d.html b/globals_eval_d.html
index 0e08c6044..b49467071 100644
--- a/globals_eval_d.html
+++ b/globals_eval_d.html
@@ -204,6 +204,9 @@ - d -
- DistribIdSyntaxRule
: DistribSBMLError.h
+- DistribMathnumber
+: DistribSBMLError.h
+
- DistribNSUndeclared
: DistribSBMLError.h
@@ -279,6 +282,9 @@ - d -
- DistribUncertSpanVarUpperMustBeSBase
: DistribSBMLError.h
+- DistribUnitsRule
+: DistribSBMLError.h
+
- DistribUnknown
: DistribSBMLError.h
diff --git a/navtreedata.js b/navtreedata.js
index e3c4ba494..73faa9dc5 100644
--- a/navtreedata.js
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index 932db6d9d..3b35cdc13 100644
--- a/search/all_4.js
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index c169096e6..304a10040 100644
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index a839f2443..e205880ed 100644
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