vignettes/competingRisk.Rmd
competingRisk.Rmd## R version 4.3.1 (2023-06-16)
+## R version 4.3.2 (2023-10-31)
## Platform: x86_64-pc-linux-gnu (64-bit)
-## Running under: Ubuntu 22.04.2 LTS
+## Running under: Ubuntu 22.04.3 LTS
##
## Matrix products: default
## BLAS: /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3
@@ -510,24 +510,23 @@ Session information## [1] stats graphics grDevices utils datasets methods base
##
## other attached packages:
-## [1] casebase_0.10.2.9999
+## [1] casebase_0.10.4
##
## loaded via a namespace (and not attached):
-## [1] sass_0.4.7 utf8_1.2.3 generics_0.1.3 stringi_1.7.12
-## [5] lattice_0.21-8 digest_0.6.33 magrittr_2.0.3 evaluate_0.21
-## [9] grid_4.3.1 fastmap_1.1.1 rprojroot_2.0.3 jsonlite_1.8.7
-## [13] Matrix_1.5-4.1 survival_3.5-5 mgcv_1.8-42 purrr_1.0.1
-## [17] fansi_1.0.4 scales_1.2.1 textshaping_0.3.6 jquerylib_0.1.4
-## [21] cli_3.6.1 rlang_1.1.1 munsell_0.5.0 splines_4.3.1
-## [25] cachem_1.0.8 yaml_2.3.7 tools_4.3.1 memoise_2.0.1
-## [29] dplyr_1.1.2 colorspace_2.1-0 ggplot2_3.4.2 VGAM_1.1-8
-## [33] vctrs_0.6.3 R6_2.5.1 stats4_4.3.1 lifecycle_1.0.3
-## [37] stringr_1.5.0 fs_1.6.3 ragg_1.2.5 pkgconfig_2.0.3
-## [41] desc_1.4.2 pkgdown_2.0.7 bslib_0.5.0 pillar_1.9.0
-## [45] gtable_0.3.3 data.table_1.14.8 glue_1.6.2 systemfonts_1.0.4
-## [49] xfun_0.39 tibble_3.2.1 tidyselect_1.2.0 highr_0.10
-## [53] knitr_1.43 htmltools_0.5.5 nlme_3.1-162 rmarkdown_2.23
-## [57] compiler_4.3.1
+## [1] sass_0.4.8 utf8_1.2.4 generics_0.1.3 stringi_1.8.3
+## [5] lattice_0.21-9 digest_0.6.34 magrittr_2.0.3 evaluate_0.23
+## [9] grid_4.3.2 fastmap_1.1.1 jsonlite_1.8.8 Matrix_1.6-1.1
+## [13] survival_3.5-7 mgcv_1.9-0 purrr_1.0.2 fansi_1.0.6
+## [17] scales_1.3.0 textshaping_0.3.7 jquerylib_0.1.4 cli_3.6.2
+## [21] rlang_1.1.3 munsell_0.5.0 splines_4.3.2 cachem_1.0.8
+## [25] yaml_2.3.8 tools_4.3.2 memoise_2.0.1 dplyr_1.1.4
+## [29] colorspace_2.1-0 ggplot2_3.4.4 VGAM_1.1-9 vctrs_0.6.5
+## [33] R6_2.5.1 stats4_4.3.2 lifecycle_1.0.4 stringr_1.5.1
+## [37] fs_1.6.3 ragg_1.2.7 pkgconfig_2.0.3 desc_1.4.3
+## [41] pkgdown_2.0.7 bslib_0.6.1 pillar_1.9.0 gtable_0.3.4
+## [45] data.table_1.15.0 glue_1.7.0 systemfonts_1.0.5 xfun_0.41
+## [49] tibble_3.2.1 tidyselect_1.2.0 highr_0.10 knitr_1.45
+## [53] htmltools_0.5.7 nlme_3.1-163 rmarkdown_2.25 compiler_4.3.2vignettes/customizingpopTime.Rmd
customizingpopTime.Rmd## ScrArm time event original.time original.event event status ycoord
+## <fctr> <num> <num> <num> <int> <fctr> <int>
## 1: Control group 0.0027 0 0.0027 0 censored 88232
## 2: Control group 0.0027 0 0.0027 0 censored 88231
## 3: Control group 0.0027 0 0.0027 0 censored 88230
## 4: Control group 0.0027 0 0.0027 0 censored 88229
## 5: Control group 0.0137 0 0.0137 0 censored 88228
## 6: Control group 0.0137 0 0.0137 0 censored 88227
-## yc n_available
-## 1: 0 0
-## 2: 0 0
-## 3: 0 0
-## 4: 0 0
-## 5: 0 0
-## 6: 0 0.params arguments= 0.5)## $data
## ScrArm time event original.time original.event event status
+## <fctr> <num> <num> <num> <int> <fctr>
## 1: Control group 0.0027 0 0.0027 0 censored
## 2: Control group 0.0027 0 0.0027 0 censored
## 3: Control group 0.0027 0 0.0027 0 censored
@@ -208,18 +211,19 @@ The .params arguments## 159891: Screening group 14.9405 0 14.9405 0 censored
## 159892: Screening group 14.9405 0 14.9405 0 censored
## 159893: Screening group 14.9405 0 14.9405 0 censored
-## ycoord yc n_available
-## 1: 88232 0 0
-## 2: 88231 0 0
-## 3: 88230 0 0
-## 4: 88229 0 0
-## 5: 88228 0 0
-## ---
-## 159889: 5 0 0
-## 159890: 4 0 0
-## 159891: 3 0 0
-## 159892: 2 0 0
-## 159893: 1 0 0
+## ycoord yc n_available
+## <int> <int> <int>
+## 1: 88232 0 0
+## 2: 88231 0 0
+## 3: 88230 0 0
+## 4: 88229 0 0
+## 5: 88228 0 0
+## ---
+## 159889: 5 0 0
+## 159890: 4 0 0
+## 159891: 3 0 0
+## 159892: 2 0 0
+## 159893: 1 0 0
##
## $mapping
## Aesthetic mapping:
@@ -249,6 +253,7 @@ The .params argumentsribbon.params))
## $data
## ScrArm time event original.time original.event event status
+## <fctr> <num> <num> <num> <int> <fctr>
## 1: Control group 0.0027 0 0.0027 0 censored
## 2: Control group 0.0027 0 0.0027 0 censored
## 3: Control group 0.0027 0 0.0027 0 censored
@@ -260,18 +265,19 @@ The .params arguments## 159891: Screening group 14.9405 0 14.9405 0 censored
## 159892: Screening group 14.9405 0 14.9405 0 censored
## 159893: Screening group 14.9405 0 14.9405 0 censored
-## ycoord yc n_available
-## 1: 88232 0 0
-## 2: 88231 0 0
-## 3: 88230 0 0
-## 4: 88229 0 0
-## 5: 88228 0 0
-## ---
-## 159889: 5 0 0
-## 159890: 4 0 0
-## 159891: 3 0 0
-## 159892: 2 0 0
-## 159893: 1 0 0
+## ycoord yc n_available
+## <int> <int> <int>
+## 1: 88232 0 0
+## 2: 88231 0 0
+## 3: 88230 0 0
+## 4: 88229 0 0
+## 5: 88228 0 0
+## ---
+## 159889: 5 0 0
+## 159890: 4 0 0
+## 159891: 3 0 0
+## 159892: 2 0 0
+## 159893: 1 0 0
##
## $mapping
## Aesthetic mapping:
@@ -499,9 +505,9 @@ Change Point Color and Legend Labe
Session information
-## R version 4.3.1 (2023-06-16)
+## R version 4.3.2 (2023-10-31)
## Platform: x86_64-pc-linux-gnu (64-bit)
-## Running under: Ubuntu 22.04.2 LTS
+## Running under: Ubuntu 22.04.3 LTS
##
## Matrix products: default
## BLAS: /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3
@@ -511,24 +517,24 @@ Session information## [1] stats graphics grDevices utils datasets methods base
##
## other attached packages:
-## [1] colorspace_2.1-0 data.table_1.14.8 ggplot2_3.4.2
-## [4] casebase_0.10.2.9999 survival_3.5-5
+## [1] colorspace_2.1-0 data.table_1.15.0 ggplot2_3.4.4 casebase_0.10.4
+## [5] survival_3.5-7
##
## loaded via a namespace (and not attached):
-## [1] sass_0.4.7 utf8_1.2.3 generics_0.1.3 stringi_1.7.12
-## [5] lattice_0.21-8 digest_0.6.33 magrittr_2.0.3 evaluate_0.21
-## [9] grid_4.3.1 fastmap_1.1.1 rprojroot_2.0.3 jsonlite_1.8.7
-## [13] Matrix_1.5-4.1 mgcv_1.8-42 purrr_1.0.1 fansi_1.0.4
-## [17] scales_1.2.1 textshaping_0.3.6 jquerylib_0.1.4 cli_3.6.1
-## [21] rlang_1.1.1 munsell_0.5.0 splines_4.3.1 withr_2.5.0
-## [25] cachem_1.0.8 yaml_2.3.7 tools_4.3.1 memoise_2.0.1
-## [29] dplyr_1.1.2 VGAM_1.1-8 vctrs_0.6.3 R6_2.5.1
-## [33] stats4_4.3.1 lifecycle_1.0.3 stringr_1.5.0 fs_1.6.3
-## [37] ragg_1.2.5 pkgconfig_2.0.3 desc_1.4.2 pkgdown_2.0.7
-## [41] bslib_0.5.0 pillar_1.9.0 gtable_0.3.3 glue_1.6.2
-## [45] systemfonts_1.0.4 highr_0.10 xfun_0.39 tibble_3.2.1
-## [49] tidyselect_1.2.0 knitr_1.43 farver_2.1.1 nlme_3.1-162
-## [53] htmltools_0.5.5 labeling_0.4.2 rmarkdown_2.23 compiler_4.3.1
+## [1] sass_0.4.8 utf8_1.2.4 generics_0.1.3 stringi_1.8.3
+## [5] lattice_0.21-9 digest_0.6.34 magrittr_2.0.3 evaluate_0.23
+## [9] grid_4.3.2 fastmap_1.1.1 jsonlite_1.8.8 Matrix_1.6-1.1
+## [13] mgcv_1.9-0 purrr_1.0.2 fansi_1.0.6 scales_1.3.0
+## [17] textshaping_0.3.7 jquerylib_0.1.4 cli_3.6.2 rlang_1.1.3
+## [21] munsell_0.5.0 splines_4.3.2 withr_3.0.0 cachem_1.0.8
+## [25] yaml_2.3.8 tools_4.3.2 memoise_2.0.1 dplyr_1.1.4
+## [29] VGAM_1.1-9 vctrs_0.6.5 R6_2.5.1 stats4_4.3.2
+## [33] lifecycle_1.0.4 stringr_1.5.1 fs_1.6.3 ragg_1.2.7
+## [37] pkgconfig_2.0.3 desc_1.4.3 pkgdown_2.0.7 bslib_0.6.1
+## [41] pillar_1.9.0 gtable_0.3.4 glue_1.7.0 systemfonts_1.0.5
+## [45] highr_0.10 xfun_0.41 tibble_3.2.1 tidyselect_1.2.0
+## [49] knitr_1.45 farver_2.1.1 htmltools_0.5.7 nlme_3.1-163
+## [53] labeling_0.4.3 rmarkdown_2.25 compiler_4.3.2
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diff --git a/articles/index.html b/articles/index.html
index 43f74eb..245d974 100644
--- a/articles/index.html
+++ b/articles/index.html
@@ -17,7 +17,7 @@
diff --git a/articles/plotabsRisk.html b/articles/plotabsRisk.html
index 732bcb7..fad841b 100644
--- a/articles/plotabsRisk.html
+++ b/articles/plotabsRisk.html
@@ -33,7 +33,7 @@
@@ -107,7 +107,7 @@ Plot Cumulative Incidence and Survival
Sahir Rai
Bhatnagar
- 2023-08-03
+ 2024-02-01
Source: vignettes/plotabsRisk.Rmd
plotabsRisk.Rmd
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diff --git a/articles/plotsmoothHazard.html b/articles/plotsmoothHazard.html
index 41fb50c..67f228d 100644
--- a/articles/plotsmoothHazard.html
+++ b/articles/plotsmoothHazard.html
@@ -33,7 +33,7 @@
@@ -106,7 +106,7 @@ Plot Hazards and Hazard Ratios
Sahir Rai
Bhatnagar
- 2023-08-03
+ 2024-02-01
Source: vignettes/plotsmoothHazard.Rmd
plotsmoothHazard.Rmd
@@ -168,19 +168,19 @@ One binary predictor, no interacti
#>
#> Coefficients:
#> Estimate Std. Error z value Pr(>|z|)
-#> (Intercept) -67.9011 14.4567 -4.697 2.64e-06 ***
-#> ns(log(time), df = 3)1 40.2575 9.4892 4.242 2.21e-05 ***
-#> ns(log(time), df = 3)2 116.2122 28.1795 4.124 3.72e-05 ***
-#> ns(log(time), df = 3)3 23.9154 5.7444 4.163 3.14e-05 ***
-#> hormon -0.3543 0.1256 -2.821 0.00479 **
+#> (Intercept) -83.4403 18.3248 -4.553 5.28e-06 ***
+#> ns(log(time), df = 3)1 50.6330 12.0611 4.198 2.69e-05 ***
+#> ns(log(time), df = 3)2 145.9994 35.6225 4.099 4.16e-05 ***
+#> ns(log(time), df = 3)3 30.3923 7.3359 4.143 3.43e-05 ***
+#> hormon -0.3621 0.1256 -2.883 0.00394 **
#> ---
#> Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
#>
#> (Dispersion parameter for binomial family taken to be 1)
#>
#> Null deviance: 3354.9 on 30198 degrees of freedom
-#> Residual deviance: 3276.3 on 30194 degrees of freedom
-#> AIC: 3286.3
+#> Residual deviance: 3275.8 on 30194 degrees of freedom
+#> AIC: 3285.8
#>
#> Number of Fisher Scoring iterations: 10
head(plot_results$fit)
#> time hormon offset cens visregFit visregLwr visregUpr
-#> 1 0.04678729 0 0 0 3.242873e-30 1.526739e-40 6.888030e-20
-#> 2 26.39321585 0 0 0 3.061455e-07 1.998983e-08 4.688636e-06
-#> 3 52.73964441 0 0 0 7.469611e-06 1.638615e-06 3.405014e-05
-#> 4 79.08607297 0 0 0 3.353917e-05 1.275811e-05 8.816949e-05
-#> 5 105.43250153 0 0 0 8.167855e-05 4.243073e-05 1.572300e-04
-#> 6 131.77893009 0 0 0 1.467350e-04 9.231788e-05 2.332285e-04Now we can easily plot the hazard function over time for each @@ -355,25 +355,25 @@
There are now many ways to plot the time-varying effect of estrogen
receptor on the hazard function. The default is to plot the 10th, 50th
and 90th quantiles of the by variable:
In the following plot, we show the time-varying effect of @@ -606,18 +606,18 @@
To plot the hazard ratio, we must specify the newdata
@@ -716,19 +716,19 @@
head(result)
#> treatment time log_hazard_ratio standarderror hazard_ratio lowerbound
-#> 1% estPro 0.9166667 -0.4681589 0.1764989 0.6261540 0.4430421
-#> 2% estPro 1.7500000 -0.3634299 0.1401219 0.6952874 0.5283144
-#> 3% estPro 2.5000000 -0.2691739 0.1184741 0.7640104 0.6056949
-#> 4% estPro 3.1666667 -0.1853907 0.1133671 0.8307796 0.6652541
-#> 5% estPro 3.4166667 -0.1539721 0.1154480 0.8572960 0.6836932
-#> 6% estPro 3.9166667 -0.0911347 0.1256429 0.9128947 0.7136302
+#> 1% estPro 0.9166667 -0.4981772 0.1770987 0.6076373 0.4294352
+#> 2% estPro 1.7500000 -0.3891195 0.1403865 0.6776533 0.5146481
+#> 3% estPro 2.5000000 -0.2909676 0.1185219 0.7475399 0.5925818
+#> 4% estPro 3.1666667 -0.2037214 0.1133852 0.8156896 0.6531475
+#> 5% estPro 3.4166667 -0.1710041 0.1155051 0.8428181 0.6720719
+#> 6% estPro 3.9166667 -0.1055695 0.1258445 0.8998119 0.7031253
#> upperbound
-#> 1% 0.8849471
-#> 2% 0.9150321
-#> 3% 0.9637061
-#> 4% 1.0374905
-#> 5% 1.0749797
-#> 6% 1.1677992
+#> 1% 0.8597875
+#> 2% 0.8922874
+#> 3% 0.9430189
+#> 4% 1.0186818
+#> 5% 1.0569439
+#> 6% 1.1515181
vignettes/popTime.Rmd
popTime.Rmd
head(pt_object)## ScrArm time event original.time original.event event status
+## <fctr> <num> <num> <num> <int> <fctr>
## 1: Screening group 0.0027 0 0.0027 0 censored
## 2: Screening group 0.0027 0 0.0027 0 censored
## 3: Screening group 0.0027 0 0.0027 0 censored
## 4: Control group 0.0027 0 0.0027 0 censored
## 5: Control group 0.0027 0 0.0027 0 censored
## 6: Control group 0.0027 0 0.0027 0 censored
-## ycoord yc n_available
-## 1: 159893 0 0
-## 2: 159892 0 0
-## 3: 159891 0 0
-## 4: 159890 0 0
-## 5: 159889 0 0
-## 6: 159888 0 0
class(pt_object)## [1] "popTime" "data.table" "data.frame"
head(pt_object_strat)## ScrArm time event original.time original.event event status ycoord
+## <fctr> <num> <num> <num> <int> <fctr> <int>
## 1: Control group 0.0027 0 0.0027 0 censored 88232
## 2: Control group 0.0027 0 0.0027 0 censored 88231
## 3: Control group 0.0027 0 0.0027 0 censored 88230
## 4: Control group 0.0027 0 0.0027 0 censored 88229
## 5: Control group 0.0137 0 0.0137 0 censored 88228
## 6: Control group 0.0137 0 0.0137 0 censored 88227
-## yc n_available
-## 1: 0 0
-## 2: 0 0
-## 3: 0 0
-## 4: 0 0
-## 5: 0 0
-## 6: 0 0
class(pt_object_strat)## [1] "popTime" "data.table" "data.frame"## R version 4.3.1 (2023-06-16)
+## R version 4.3.2 (2023-10-31)
## Platform: x86_64-pc-linux-gnu (64-bit)
-## Running under: Ubuntu 22.04.2 LTS
+## Running under: Ubuntu 22.04.3 LTS
##
## Matrix products: default
## BLAS: /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3
@@ -716,25 +720,23 @@ Session information## [1] stats graphics grDevices utils datasets methods base
##
## other attached packages:
-## [1] data.table_1.14.8 ggplot2_3.4.2 casebase_0.10.2.9999
-## [4] survival_3.5-5
+## [1] data.table_1.15.0 ggplot2_3.4.4 casebase_0.10.4 survival_3.5-7
##
## loaded via a namespace (and not attached):
-## [1] sass_0.4.7 utf8_1.2.3 generics_0.1.3 stringi_1.7.12
-## [5] lattice_0.21-8 digest_0.6.33 magrittr_2.0.3 evaluate_0.21
-## [9] grid_4.3.1 fastmap_1.1.1 rprojroot_2.0.3 jsonlite_1.8.7
-## [13] Matrix_1.5-4.1 mgcv_1.8-42 purrr_1.0.1 fansi_1.0.4
-## [17] scales_1.2.1 textshaping_0.3.6 jquerylib_0.1.4 cli_3.6.1
-## [21] rlang_1.1.1 munsell_0.5.0 splines_4.3.1 withr_2.5.0
-## [25] cachem_1.0.8 yaml_2.3.7 tools_4.3.1 memoise_2.0.1
-## [29] dplyr_1.1.2 colorspace_2.1-0 VGAM_1.1-8 vctrs_0.6.3
-## [33] R6_2.5.1 stats4_4.3.1 lifecycle_1.0.3 stringr_1.5.0
-## [37] fs_1.6.3 ragg_1.2.5 pkgconfig_2.0.3 desc_1.4.2
-## [41] pkgdown_2.0.7 bslib_0.5.0 pillar_1.9.0 gtable_0.3.3
-## [45] glue_1.6.2 systemfonts_1.0.4 highr_0.10 xfun_0.39
-## [49] tibble_3.2.1 tidyselect_1.2.0 knitr_1.43 farver_2.1.1
-## [53] htmltools_0.5.5 nlme_3.1-162 labeling_0.4.2 rmarkdown_2.23
-## [57] compiler_4.3.1
+## [1] sass_0.4.8 utf8_1.2.4 generics_0.1.3 stringi_1.8.3
+## [5] lattice_0.21-9 digest_0.6.34 magrittr_2.0.3 evaluate_0.23
+## [9] grid_4.3.2 fastmap_1.1.1 jsonlite_1.8.8 Matrix_1.6-1.1
+## [13] mgcv_1.9-0 purrr_1.0.2 fansi_1.0.6 scales_1.3.0
+## [17] textshaping_0.3.7 jquerylib_0.1.4 cli_3.6.2 rlang_1.1.3
+## [21] munsell_0.5.0 splines_4.3.2 withr_3.0.0 cachem_1.0.8
+## [25] yaml_2.3.8 tools_4.3.2 memoise_2.0.1 dplyr_1.1.4
+## [29] colorspace_2.1-0 VGAM_1.1-9 vctrs_0.6.5 R6_2.5.1
+## [33] stats4_4.3.2 lifecycle_1.0.4 stringr_1.5.1 fs_1.6.3
+## [37] ragg_1.2.7 pkgconfig_2.0.3 desc_1.4.3 pkgdown_2.0.7
+## [41] bslib_0.6.1 pillar_1.9.0 gtable_0.3.4 glue_1.7.0
+## [45] systemfonts_1.0.5 highr_0.10 xfun_0.41 tibble_3.2.1
+## [49] tidyselect_1.2.0 knitr_1.45 farver_2.1.1 htmltools_0.5.7
+## [53] nlme_3.1-163 rmarkdown_2.25 labeling_0.4.3 compiler_4.3.2vignettes/smoothHazard.Rmd
smoothHazard.Rmd## R version 4.3.1 (2023-06-16)
+## R version 4.3.2 (2023-10-31)
## Platform: x86_64-pc-linux-gnu (64-bit)
-## Running under: Ubuntu 22.04.2 LTS
+## Running under: Ubuntu 22.04.3 LTS
##
## Matrix products: default
## BLAS: /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3
@@ -819,25 +819,24 @@ Session information## [8] base
##
## other attached packages:
-## [1] visreg_2.7.0 eha_2.10.3 survival_3.5-5
-## [4] casebase_0.10.2.9999
+## [1] visreg_2.7.0 eha_2.11.2 survival_3.5-7 casebase_0.10.4
##
## loaded via a namespace (and not attached):
-## [1] sass_0.4.7 utf8_1.2.3 generics_0.1.3 stringi_1.7.12
-## [5] lattice_0.21-8 digest_0.6.33 magrittr_2.0.3 evaluate_0.21
-## [9] grid_4.3.1 fastmap_1.1.1 rprojroot_2.0.3 jsonlite_1.8.7
-## [13] Matrix_1.5-4.1 mgcv_1.8-42 purrr_1.0.1 fansi_1.0.4
-## [17] scales_1.2.1 textshaping_0.3.6 jquerylib_0.1.4 cli_3.6.1
-## [21] rlang_1.1.1 munsell_0.5.0 withr_2.5.0 cachem_1.0.8
-## [25] yaml_2.3.7 tools_4.3.1 memoise_2.0.1 dplyr_1.1.2
-## [29] colorspace_2.1-0 ggplot2_3.4.2 VGAM_1.1-8 vctrs_0.6.3
-## [33] R6_2.5.1 stats4_4.3.1 lifecycle_1.0.3 stringr_1.5.0
-## [37] fs_1.6.3 ragg_1.2.5 pkgconfig_2.0.3 desc_1.4.2
-## [41] pkgdown_2.0.7 bslib_0.5.0 pillar_1.9.0 gtable_0.3.3
-## [45] glue_1.6.2 data.table_1.14.8 systemfonts_1.0.4 highr_0.10
-## [49] tidyselect_1.2.0 xfun_0.39 tibble_3.2.1 knitr_1.43
-## [53] farver_2.1.1 nlme_3.1-162 htmltools_0.5.5 labeling_0.4.2
-## [57] rmarkdown_2.23 compiler_4.3.1
+## [1] sass_0.4.8 utf8_1.2.4 generics_0.1.3 stringi_1.8.3
+## [5] lattice_0.21-9 digest_0.6.34 magrittr_2.0.3 evaluate_0.23
+## [9] grid_4.3.2 fastmap_1.1.1 jsonlite_1.8.8 Matrix_1.6-1.1
+## [13] mgcv_1.9-0 purrr_1.0.2 fansi_1.0.6 scales_1.3.0
+## [17] textshaping_0.3.7 jquerylib_0.1.4 cli_3.6.2 rlang_1.1.3
+## [21] munsell_0.5.0 withr_3.0.0 cachem_1.0.8 yaml_2.3.8
+## [25] tools_4.3.2 memoise_2.0.1 dplyr_1.1.4 colorspace_2.1-0
+## [29] ggplot2_3.4.4 VGAM_1.1-9 vctrs_0.6.5 R6_2.5.1
+## [33] stats4_4.3.2 lifecycle_1.0.4 stringr_1.5.1 fs_1.6.3
+## [37] ragg_1.2.7 pkgconfig_2.0.3 desc_1.4.3 pkgdown_2.0.7
+## [41] bslib_0.6.1 pillar_1.9.0 gtable_0.3.4 data.table_1.15.0
+## [45] glue_1.7.0 systemfonts_1.0.5 highr_0.10 xfun_0.41
+## [49] tibble_3.2.1 tidyselect_1.2.0 knitr_1.45 farver_2.1.1
+## [53] nlme_3.1-163 htmltools_0.5.7 labeling_0.4.3 rmarkdown_2.25
+## [57] compiler_4.3.2vignettes/time-varying-covariates.Rmd
time-varying-covariates.RmdSahir Bhatnagar. Author, maintainer.
-
http://sahirbhatnagar.com/
Maxime Turgeon. Author. -
+Maxime Turgeon. Author.
+
https://www.maxturgeon.ca/
Jesse Islam. Author. @@ -96,11 +96,11 @@
Olli Saarela. Author.
-
http://individual.utoronto.ca/osaarela/
James Hanley. Author.
-
http://www.medicine.mcgill.ca/epidemiology/hanley/
NEWS.md
+
absRiskCB class to object returned by absoluteRisk()
glmnet::prepareX to convert factors into indicator variablesglmnet::prepareX to convert factors into indicator variablesmatplot,
absoluteRisk,
-as.data.table, setattr,
-melt.data.table
as.data.table, setattr,
+melt.data.table