diff --git a/.github/workflows/publish.yml b/.github/workflows/publish.yml index 15c0d85..e357f7e 100644 --- a/.github/workflows/publish.yml +++ b/.github/workflows/publish.yml @@ -39,14 +39,11 @@ jobs: - name: Make sure data is available run: | - if [[ ! -f notebooks/usecase_data/sc_counts_reannotated_with_counts.h5ad ]]; then - wget https://openproblems-bio.s3.amazonaws.com/public/neurips-2023-competition/sc_counts_reannotated_with_counts.h5ad \ - -O notebooks/usecase_data/sc_counts_reannotated_with_counts.h5ad - fi - # aws s3 cp \ - # --no-sign-request \ - # s3://openproblems-bio/public/neurips-2023-competition/sc_counts_reannotated_with_counts.h5ad \ - # notebooks/usecase_data/sc_counts_reannotated_with_counts.h5ad + AWS_EC2_METADATA_DISABLED=true \ + aws s3 cp \ + --no-sign-request \ + s3://openproblems-bio/public/neurips-2023-competition/sc_counts_reannotated_with_counts.h5ad \ + notebooks/usecase_data/sc_counts_reannotated_with_counts.h5ad # attempt with pixi: