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Clustering with FlowSOM is possible and cell clustering with napari-cluster-plotter (https://github.com/saeyslab/harpy/blob/main/experiments/example_of_cluster_plotter.ipynb) is possible. It would be interesting to view the FlowSOM tree in a similar widget and allow labeling of the metaclusters on the tree (similar to Pixie pipeline notebook GUI, but with the imaging data in napari instead of Mantis).
create Widget class
button to cluster
button to plot FlowSOM tree
button to get labels in table
select with lasso tool
view selection on images
allow renaming metacluster labels to cell type names
plot cluster heatmap similar to to Pixie pipeline
The text was updated successfully, but these errors were encountered:
Clustering with FlowSOM is possible and cell clustering with napari-cluster-plotter (https://github.com/saeyslab/harpy/blob/main/experiments/example_of_cluster_plotter.ipynb) is possible. It would be interesting to view the FlowSOM tree in a similar widget and allow labeling of the metaclusters on the tree (similar to Pixie pipeline notebook GUI, but with the imaging data in napari instead of Mantis).
The text was updated successfully, but these errors were encountered: