From 2f13234511a997e17c78545f98d1a7b69d7e8e17 Mon Sep 17 00:00:00 2001 From: Benjamin Rombaut Date: Tue, 19 Mar 2024 16:34:40 +0100 Subject: [PATCH] simplify conda env; use in readthedocs --- .readthedocs.yaml | 6 +++++- env.yaml | 31 +------------------------------ 2 files changed, 6 insertions(+), 31 deletions(-) diff --git a/.readthedocs.yaml b/.readthedocs.yaml index 19ba15e..e1c354c 100644 --- a/.readthedocs.yaml +++ b/.readthedocs.yaml @@ -3,7 +3,11 @@ version: 2 build: os: ubuntu-20.04 tools: - python: "3.10" + python: "mambaforge-22.9" + +conda: + environment: env.yaml + sphinx: configuration: docs/conf.py # disable this for more lenient docs builds diff --git a/env.yaml b/env.yaml index 80f2fce..ce52f68 100644 --- a/env.yaml +++ b/env.yaml @@ -2,34 +2,5 @@ name: flowsom channels: - conda-forge dependencies: - - python<3.11 + - python=3.12 - pip - - numpy - - matplotlib - - pandas - - scipy - - scikit-learn - - python-igraph - - numba - - seaborn - - session-info - # cytometry - - scanpy - - mudata - # tests - - pytest - - pip: - # cytometry - - pytometry - - readfcs - # documentation - - docutils>=0.8,!=0.18.*,!=0.19.* - - sphinx>=4 - - sphinx-book-theme>=1.0.0 - - myst-nb - - sphinxcontrib-bibtex>=1.0.0 - - sphinx-autodoc-typehints - - sphinxext-opengraph - - ipykernel - - ipython - - sphinx-copybutton