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To replicate the error:
$ docker run --rm -it ubuntu bash -c "apt-get update -y && apt-get install -y git zlib1g-dev build-essential && git clone https://github.com/rrwick/Filtlong.git && cd Filtlong && make -j && bin/filtlong"
Will give many errors of the form src/kmers.h:37:26: error: 'uint32_t' has not been declared
src/kmers.h:37:26: error: 'uint32_t' has not been declared
Throwing in #include <cstdint> in src/kmers.h fixes it:
#include <cstdint>
src/kmers.h
docker run --rm -it ubuntu bash -c "apt-get update -y && apt-get install -y git zlib1g-dev build-essential && git clone https://github.com/rrwick/Filtlong.git && cd Filtlong && sed -i '1i #include <cstdint>' src/kmers.h && make -j && bin/filtlong" successfully compiles and runs filtlong
docker run --rm -it ubuntu bash -c "apt-get update -y && apt-get install -y git zlib1g-dev build-essential && git clone https://github.com/rrwick/Filtlong.git && cd Filtlong && sed -i '1i #include <cstdint>' src/kmers.h && make -j && bin/filtlong"
filtlong
The text was updated successfully, but these errors were encountered:
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To replicate the error:
$ docker run --rm -it ubuntu bash -c "apt-get update -y && apt-get install -y git zlib1g-dev build-essential && git clone https://github.com/rrwick/Filtlong.git && cd Filtlong && make -j && bin/filtlong"Will give many errors of the form
src/kmers.h:37:26: error: 'uint32_t' has not been declaredThrowing in
#include <cstdint>insrc/kmers.hfixes it:docker run --rm -it ubuntu bash -c "apt-get update -y && apt-get install -y git zlib1g-dev build-essential && git clone https://github.com/rrwick/Filtlong.git && cd Filtlong && sed -i '1i #include <cstdint>' src/kmers.h && make -j && bin/filtlong"successfully compiles and runsfiltlongThe text was updated successfully, but these errors were encountered: