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q-score filtering not working #14

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sovp opened this issue Nov 28, 2018 · 1 comment
Open

q-score filtering not working #14

sovp opened this issue Nov 28, 2018 · 1 comment

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@sovp
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sovp commented Nov 28, 2018

when I use the --min_mean_q option, no filtering is done. All the reads are just passed to the new file.

@bazante1
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Mean quality score
Read mean qualities are converted to a z-score and scaled to the range 0-100 to make the mean quality score. This means that the read with the worst mean quality in the input set will get a mean quality score of 0 and the read with the best mean quality will get a mean quality score of 100.

See Answer --> #18 (comment)

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