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Not really an issue, just a quirk of setting up the config yaml file properly.
The following formatting does not work and leads to strange mappings in work/tmp/correspondence.txt and consequently an error similar to this (if do_check_file_existence : true):
Not really an issue, just a quirk of setting up the config yaml file properly.
The following formatting does not work and leads to strange mappings in work/tmp/correspondence.txt and consequently an error similar to this (if do_check_file_existence : true):
Incorrect formatting:
fastq:
AAVS1_KO_rep1: /scratch/users/ihoskins/TEC/TEC_1_R1.fq.gz
Correct formatting:
fastq:
AAVS1_KO_rep1:
- /scratch/users/ihoskins/TEC/TEC_1_R1.fq.gz
Conversely, the newline and hyphen is not required for specifying the reference files or metadata yaml files.
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