From 7d515830cadce08e2af56c674062a062c8997377 Mon Sep 17 00:00:00 2001 From: Peter Weber Date: Thu, 9 Jan 2020 16:17:41 +0100 Subject: [PATCH] instance: upate invenio to 3.2, improve harvesting * Updates invenio to version 3.2. * Bumps ES to version 7. * Uses Postgress 12 * Adds XSL style to OAI2D. * Implements deletion of resource links for unavailable ebooks during harvesting. * Uses poetry. * Adds oai2debug endpoint with debug output. Co-Authored-by: Peter Weber --- .travis.yml | 15 +- Dockerfile | 6 +- Dockerfile.base | 2 +- MANIFEST.in | 1 + Pipfile | 57 - Pipfile.lock | 1727 ---- requirements-devel.txt => data/oaisets.yml | 24 +- docker-compose.full.yml | 8 +- docker-services.yml | 10 +- docker/nginx/nginx.conf | 7 +- docs/conf.py | 2 - poetry.lock | 4028 +++++++++ pyproject.toml | 99 + pytest.ini | 5 + requirements.txt | 31 - rero_ebooks/api.py | 239 +- rero_ebooks/apiharvester/cli.py | 18 +- rero_ebooks/apiharvester/errors.py | 51 + rero_ebooks/apiharvester/models.py | 10 +- rero_ebooks/apiharvester/tasks.py | 24 +- rero_ebooks/apiharvester/utils.py | 62 +- rero_ebooks/cantook/api.py | 129 +- rero_ebooks/celery.py | 47 + rero_ebooks/config.py | 59 +- rero_ebooks/dojson/marc21/fields/bd00x.py | 2 - rero_ebooks/dojson/marc21/model.py | 2 +- rero_ebooks/ext.py | 10 - rero_ebooks/fetchers.py | 2 +- .../mappings/v6/ebooks/ebook-v1.0.0.json | 7991 ----------------- rero_ebooks/mappings/{v6 => v7}/__init__.py | 0 .../mappings/v7/ebooks/ebook-v1.0.0.json | 7976 ++++++++++++++++ rero_ebooks/receivers.py | 47 - rero_ebooks/static/xsl/oai.xsl | 705 ++ rero_ebooks/tasks.py | 71 - rero_ebooks/version.py | 2 +- rero_ebooks/views.py | 24 +- run-tests.sh | 69 +- scripts/{worker_beat => __init__.py} | 19 +- scripts/bootstrap | 108 +- scripts/console | 49 +- scripts/server | 85 +- scripts/setup | 86 +- scripts/update | 50 +- setup.py | 5 +- tests/api/conftest.py | 61 +- tests/api/test_api.py | 55 +- tests/conftest.py | 33 + tests/unit/test_apiharvester_cli.py | 57 +- 48 files changed, 13971 insertions(+), 10199 deletions(-) delete mode 100644 Pipfile delete mode 100644 Pipfile.lock rename requirements-devel.txt => data/oaisets.yml (60%) create mode 100644 poetry.lock create mode 100644 pyproject.toml delete mode 100644 requirements.txt create mode 100644 rero_ebooks/apiharvester/errors.py create mode 100644 rero_ebooks/celery.py delete mode 100644 rero_ebooks/mappings/v6/ebooks/ebook-v1.0.0.json rename rero_ebooks/mappings/{v6 => v7}/__init__.py (100%) create mode 100644 rero_ebooks/mappings/v7/ebooks/ebook-v1.0.0.json delete mode 100644 rero_ebooks/receivers.py create mode 100644 rero_ebooks/static/xsl/oai.xsl delete mode 100644 rero_ebooks/tasks.py rename scripts/{worker_beat => __init__.py} (65%) mode change 100755 => 100644 diff --git a/.travis.yml b/.travis.yml index 1ea4d54..05a676f 100644 --- a/.travis.yml +++ b/.travis.yml @@ -50,9 +50,11 @@ env: - E2E_OUTPUT=base64 # Enable end-to-end tests - E2E=no + # Enable Europe/Zurich timezone + - TZ="Europe/Zurich" matrix: - - REQUIREMENTS=prod - - REQUIREMENTS=qa + - REQUIREMENTS="--deploy" E2E=yes + - REQUIREMENTS="" python: - "3.6" @@ -66,14 +68,15 @@ before_install: # Chrome webdriver for Selenium - "PATH=$PATH:$HOME/webdrivers" - "if [ ${E2E} == 'yes' ] && [ ! -f $HOME/webdrivers/chromedriver ]; then wget https://chromedriver.storage.googleapis.com/2.31/chromedriver_linux64.zip -P $HOME/webdrivers; unzip -d $HOME/webdrivers $HOME/webdrivers/chromedriver_linux64.zip; fi" - - "nvm install 6; nvm use 6" - - "travis_retry pip install --upgrade setuptools py pipenv==2018.10.9" + - "nvm install 8; nvm use 8" + - "travis_retry pip install --upgrade setuptools py poetry" - "travis_retry pip install twine wheel coveralls" - # patch default version of travis which is mark as unsave by pipenv check + # patch default version of travis which is mark as unsave by safety check - "travis_retry pip install --upgrade numpy" install: - "./scripts/bootstrap --ci" + - "poetry show" # To have details about installed libs (isort, pytest, etc.) before_script: # https://docs.travis-ci.com/user/gui-and-headless-browsers/ @@ -83,7 +86,7 @@ before_script: - "./docker/wait-for-services.sh" script: - - ./run-tests.sh # E2E tests are skipped if E2E env is set to 'no' + - poetry run run-tests # E2E tests are skipped if E2E env is set to 'no' after_success: - coveralls diff --git a/Dockerfile b/Dockerfile index 2d5aeaa..a56cfe0 100644 --- a/Dockerfile +++ b/Dockerfile @@ -35,9 +35,7 @@ RUN chown -R invenio:invenio ${WORKING_DIR} USER 1000 -# workaround -RUN rm -rf /invenio/src/ui/admin/node_modules -RUN npm uninstall --prefix `pipenv --venv` --silent -g node-sass clean-css uglify-js requirejs +RUN npm uninstall --prefix `poetry env info -p` --silent -g node-sass clean-css uglify-js requirejs ENV INVENIO_COLLECT_STORAGE='flask_collect.storage.file' -RUN ./scripts/bootstrap --deploy +RUN poetry run bootstrap --deploy diff --git a/Dockerfile.base b/Dockerfile.base index 9e70786..5fa9f81 100644 --- a/Dockerfile.base +++ b/Dockerfile.base @@ -27,7 +27,7 @@ FROM python:3.6-slim-stretch # require debian packages RUN apt-get update -y && apt-get upgrade -y RUN apt-get install --no-install-recommends -y git vim-tiny curl gcc gnupg libc6-dev && rm -rf /var/lib/apt/lists/* -RUN pip install --upgrade setuptools wheel pip pipenv +RUN pip install --upgrade setuptools wheel pip poetry # # uwsgi uwsgitop uwsgi-tools diff --git a/MANIFEST.in b/MANIFEST.in index 03b826f..b68c909 100644 --- a/MANIFEST.in +++ b/MANIFEST.in @@ -77,5 +77,6 @@ include Pipfile recursive-include rero_ebooks *.png recursive-include rero_ebooks *.scss recursive-include rero_ebooks *.py +recursive-include rero_ebooks *.xsl recursive-include tests *.json recursive-include tests *.yml diff --git a/Pipfile b/Pipfile deleted file mode 100644 index 883d0b6..0000000 --- a/Pipfile +++ /dev/null @@ -1,57 +0,0 @@ -[[source]] -url = "https://pypi.org/simple" -verify_ssl = true -name = "pypi" - -[packages] -# Default from Invenio -Babel = ">=2.4.0" -Flask-BabelEx = ">=0.9.3" -uwsgi = ">=2.0" -uwsgitop = ">=0.11" -uwsgi-tools = ">=1.1.1" -lxml = ">=3.5.0,<4.2.6" -# RERO ILS specific python packages -PyYAML = ">=3.13" -isbnlib = ">=3.9.1" -requests = ">=2.20.0" -responses = "*" -# Invenio -celery = "<4.3.0" -invenio-oaiharvester = {ref = "v1.0.0a4",git = "https://github.com/inveniosoftware/invenio-oaiharvester.git"} -invenio = {version = "~=3.1.0",extras = ["base", "postgresql", "auth", "elasticsearch6" ]} -dojson = ">=1.3.2" -# get rid of invenio-search-ui -invenio-indexer = ">=1.0.1,<1.1.0" -invenio-jsonschemas = ">=1.0.0,<1.1.0" -invenio-oaiserver = ">=1.0.3,<1.1.0" -invenio-pidstore = ">=1.0.0,<1.1.0" -invenio-records-rest = ">=1.4.0,<1.5.0" -invenio-records-ui = ">=1.0.1,<1.1.0" -# separate tables -invenio-records = ">=1.3.0" -# self install -rero-ebooks = {editable = true,path = "."} - -[dev-packages] -Sphinx = ">=1.5.1" -check-manifest = ">=0.35" -coverage = ">=4.4.1" -isort = ">=4.3.5,<4.3.10" -mock = ">=2.0.0" -pydocstyle = ">=2.0.0" -pytest = ">=3.3.1" -pytest-cov = ">=2.5.1" -pytest-invenio = ">=1.1.0" -pytest-mock = ">=1.6.0" -pytest-pep8 = ">=1.0.6" -pytest-random-order = ">=0.5.4" -pytest-runner = ">=3.0.0,<5" - -[requires] -python_version = "3.6" - -[scripts] -test = "python setup.py test" -build_sphinx = "python setup.py build_sphinx" -dev = "pytest --no-cov -vs tests" diff --git a/Pipfile.lock b/Pipfile.lock deleted file mode 100644 index 6d6392a..0000000 --- a/Pipfile.lock +++ /dev/null @@ -1,1727 +0,0 @@ -{ - "_meta": { - "hash": { - "sha256": "7a87f314c7dc6cd6fb55dce5a2f48d299664bfd2b03f5da755baceecbfd227f5" - }, - "pipfile-spec": 6, - "requires": { - "python_version": "3.6" - }, - "sources": [ - { - "name": "pypi", - "url": "https://pypi.org/simple", - "verify_ssl": true - } - ] - }, - "default": { - "alembic": { - "hashes": [ - "sha256:9f907d7e8b286a1cfb22db9084f9ce4fde7ad7956bb496dc7c952e10ac90e36a" - ], - "version": "==1.2.1" - }, - "amqp": { - "hashes": [ - "sha256:19a917e260178b8d410122712bac69cb3e6db010d68f6101e7307508aded5e68", - "sha256:19d851b879a471fcfdcf01df9936cff924f422baa77653289f7095dedd5fb26a" - ], - "version": "==2.5.1" - }, - "appnope": { - "hashes": [ - "sha256:5b26757dc6f79a3b7dc9fab95359328d5747fcb2409d331ea66d0272b90ab2a0", - 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See the GNU # General Public License for more details. # # You should have received a copy of the GNU General Public License -# along with RERO Ebooks; if not, write to the +# along with Invenio; if not, write to the # Free Software Foundation, Inc., 59 Temple Place, Suite 330, Boston, # MA 02111-1307, USA. # # In applying this license, RERO does not # waive the privileges and immunities granted to it by virtue of its status # as an Intergovernmental Organization or submit itself to any jurisdiction. -# for development --e git+git://github.com/inveniosoftware/dojson.git#egg=dojson --e git+git://github.com/inveniosoftware/invenio-oaiharvester.git#egg=invenio-oaiharvester --e git+git://github.com/inveniosoftware/invenio-oaiserver.git#egg=invenio-oaiserver + +# OAI set configuration. +mv-cantook: + description: http://mediatheque-valais.cantookstation.eu + pattern: electronic_location_and_access.nonpublic_note:mv-cantook + + +ebibliomedia: + description: https://bm.ebibliomedia.ch + pattern: electronic_location_and_access.nonpublic_note:ebibliomedia diff --git a/docker-compose.full.yml b/docker-compose.full.yml index f28ac29..c59f7a4 100644 --- a/docker-compose.full.yml +++ b/docker-compose.full.yml @@ -46,7 +46,7 @@ services: extends: file: docker-services.yml service: app - command: pipenv run uwsgi /invenio/var/instance/uwsgi_ui.ini + command: poetry run uwsgi /invenio/var/instance/uwsgi_ui.ini image: rero-ebooks-web--ui ports: - "5000:5000" @@ -62,7 +62,7 @@ services: extends: file: docker-services.yml service: app - command: pipenv run uwsgi /invenio/var/instance/uwsgi_rest.ini + command: poetry run uwsgi /invenio/var/instance/uwsgi_rest.ini image: rero-ebooks-web-api ports: - "5001:5001" @@ -79,7 +79,7 @@ services: file: docker-services.yml service: app restart: "always" - command: "pipenv run celery worker -A invenio_app.celery --loglevel=INFO" + command: "poetry run celery worker -A rero_ebooks.celery --loglevel=INFO" image: rero-ebooks-worker links: - cache @@ -92,7 +92,7 @@ services: file: docker-services.yml service: app restart: "always" - command: "pipenv run celery beat -A invenio_app.celery --loglevel=INFO" + command: "poetry run celery beat -A rero_ebooks.celery --loglevel=INFO" image: rero-ebooks-beat links: - cache diff --git a/docker-services.yml b/docker-services.yml index c9cb584..be06988 100644 --- a/docker-services.yml +++ b/docker-services.yml @@ -64,7 +64,7 @@ services: ports: - "6379:6379" db: - image: postgres:9.6 + image: postgres:12 restart: "always" environment: - "POSTGRES_USER=rero-ebooks" @@ -79,11 +79,13 @@ services: - "15672:15672" - "5672:5672" es: - image: docker.elastic.co/elasticsearch/elasticsearch-oss:6.6.2 + image: docker.elastic.co/elasticsearch/elasticsearch-oss:7.6.2 restart: "always" environment: - - bootstrap.memory_lock=true - "ES_JAVA_OPTS=-Xms512m -Xmx512m" + - "discovery.type=single-node" + - "bootstrap.memory_lock=true" + - "indices.query.bool.max_clause_count=3000" ulimits: memlock: soft: -1 @@ -93,7 +95,7 @@ services: - "9200:9200" - "9300:9300" kibana: - image: docker.elastic.co/elasticsearch/kibana-oss:6.6.2 + image: docker.elastic.co/elasticsearch/kibana-oss:7.6.2 environment: - "ELASTICSEARCH_URL=http://es:9200" - "ES_JAVA_OPTS=-Xms512m -Xmx512m" diff --git a/docker/nginx/nginx.conf b/docker/nginx/nginx.conf index bef7dea..01fa31f 100644 --- a/docker/nginx/nginx.conf +++ b/docker/nginx/nginx.conf @@ -36,11 +36,16 @@ http { include /etc/nginx/mime.types; default_type application/octet-stream; + map "$request:$status:$body_bytes_sent" $loggable { + "OPTIONS / HTTP/1.0:200:0" 0; + default 1; + } + log_format main '$remote_addr - $remote_user [$time_local] "$request" ' '$status $body_bytes_sent "$http_referer" ' '"$http_user_agent" "$http_x_forwarded_for"'; - access_log /var/log/nginx/access.log main; + access_log /var/log/nginx/access.log main if=$loggable; sendfile on; tcp_nopush on; diff --git a/docs/conf.py b/docs/conf.py index a5ccb7d..9bec00d 100644 --- a/docs/conf.py +++ b/docs/conf.py @@ -29,8 +29,6 @@ import os -import sphinx.environment - # -- General configuration ------------------------------------------------ # If your documentation needs a minimal Sphinx version, state it here. diff --git a/poetry.lock b/poetry.lock new file mode 100644 index 0000000..8779a49 --- /dev/null +++ b/poetry.lock @@ -0,0 +1,4028 @@ +[[package]] +category = "dev" +description = "A configurable sidebar-enabled Sphinx theme" +name = "alabaster" +optional = false +python-versions = "*" +version = "0.7.12" + +[[package]] +category = "main" +description = "A database migration tool for SQLAlchemy." +name = "alembic" +optional = false +python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" +version = "1.4.2" + +[package.dependencies] +Mako = "*" +SQLAlchemy = ">=1.1.0" +python-dateutil = "*" +python-editor = ">=0.3" + +[[package]] +category = "main" +description = "Low-level AMQP client for Python (fork of amqplib)." +marker = "python_version < \"3.7\" or python_version >= \"3.7\"" +name = "amqp" +optional = false +python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" +version = "2.6.0" + +[package.dependencies] +vine = ">=1.1.3,<5.0.0a1" + +[[package]] +category = "dev" +description = "apipkg: namespace control and lazy-import mechanism" +name = "apipkg" +optional = false +python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" +version = "1.5" + +[[package]] +category = "main" +description = "Disable App Nap on OS X 10.9" +name = "appnope" +optional = false +python-versions = "*" +version = "0.1.0" + +[[package]] +category = "main" +description = "Better dates & times for Python" +name = "arrow" +optional = false +python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" +version = "0.15.6" + +[package.dependencies] +python-dateutil = "*" + +[[package]] +category = "dev" +description = "Atomic file writes." +marker = "sys_platform == \"win32\"" +name = "atomicwrites" +optional = false +python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" +version = "1.4.0" + +[[package]] +category = "main" +description = "Classes Without Boilerplate" +name = "attrs" +optional = false +python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" +version = "19.3.0" + +[package.extras] +azure-pipelines = ["coverage", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "zope.interface", "pytest-azurepipelines"] +dev = ["coverage", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "zope.interface", "sphinx", "pre-commit"] +docs = ["sphinx", "zope.interface"] +tests = ["coverage", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "zope.interface"] + +[[package]] +category = "dev" +description = "Removes unused imports and unused variables" +name = "autoflake" +optional = false +python-versions = "*" +version = "1.3.1" + +[package.dependencies] +pyflakes = ">=1.1.0" + +[[package]] +category = "main" +description = "Internationalization utilities" +name = "babel" +optional = false +python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" +version = "2.8.0" + +[package.dependencies] +pytz = ">=2015.7" + +[[package]] +category = "main" +description = "Specifications for callback functions passed in to an API" +name = "backcall" +optional = false +python-versions = "*" +version = "0.1.0" + +[[package]] +category = "main" +description = "Small library to generate, encode and decode random base32 strings." +name = "base32-lib" +optional = false +python-versions = "*" +version = "1.0.2" + +[package.dependencies] +six = ">=1.10" + +[package.extras] +all = ["Sphinx (>=1.4.2)", "check-manifest (>=0.25)", "coverage (>=4.0)", "isort (>=4.2.2)", "pydocstyle (>=1.0)", "pytest-cov (>=1.8.0)", "pytest-pep8 (>=1.0.6)", "pytest-runner (>=2.7.0)", "pytest (>=3.6.0)"] +docs = ["Sphinx (>=1.4.2)"] +tests = ["check-manifest (>=0.25)", "coverage (>=4.0)", "isort (>=4.2.2)", "pydocstyle (>=1.0)", "pytest-cov (>=1.8.0)", "pytest-pep8 (>=1.0.6)", "pytest-runner (>=2.7.0)", "pytest (>=3.6.0)"] + +[[package]] +category = "main" +description = "Python multiprocessing fork with improvements and bugfixes" +marker = "python_version < \"3.7\" or python_version >= \"3.7\"" +name = "billiard" +optional = false +python-versions = "*" +version = "3.6.3.0" + +[[package]] +category = "main" +description = "An easy safelist-based HTML-sanitizing tool." +name = "bleach" +optional = false +python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" +version = "3.1.5" + +[package.dependencies] +packaging = "*" +six = ">=1.9.0" +webencodings = "*" + +[[package]] +category = "main" +description = "Fast, simple object-to-object and broadcast signaling" +name = "blinker" +optional = false +python-versions = "*" +version = "1.4" + +[[package]] +category = "main" +description = "Distributed Task Queue." +name = "celery" +optional = false +python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" +version = "4.4.4" + +[package.dependencies] +billiard = ">=3.6.3.0,<4.0" +kombu = ">=4.6.10,<4.7" +pytz = ">0.0-dev" +vine = "1.3.0" + +[package.extras] +arangodb = ["pyArango (>=1.3.2)"] +auth = ["cryptography"] +azureblockblob = ["azure-storage (0.36.0)", "azure-common (1.1.5)", "azure-storage-common (1.1.0)"] +brotli = ["brotli (>=1.0.0)", "brotlipy (>=0.7.0)"] +cassandra = ["cassandra-driver (<3.21.0)"] +consul = ["python-consul"] +cosmosdbsql = ["pydocumentdb (2.3.2)"] +couchbase = ["couchbase-cffi (<3.0.0)", "couchbase (<3.0.0)"] +couchdb = ["pycouchdb"] +django = ["Django (>=1.11)"] +dynamodb = ["boto3 (>=1.9.178)"] +elasticsearch = ["elasticsearch"] +eventlet = ["eventlet (>=0.24.1)"] +gevent = ["gevent"] +librabbitmq = ["librabbitmq (>=1.5.0)"] +lzma = ["backports.lzma"] +memcache = ["pylibmc"] +mongodb = ["pymongo (>=3.3.0)"] +msgpack = ["msgpack"] +pymemcache = ["python-memcached"] +pyro = ["pyro4"] +redis = ["redis (>=3.2.0)"] +riak = ["riak (>=2.0)"] +s3 = ["boto3 (>=1.9.125)"] +slmq = ["softlayer-messaging (>=1.0.3)"] +solar = ["ephem"] +sqlalchemy = ["sqlalchemy"] +sqs = ["boto3 (>=1.9.125)", "pycurl (7.43.0.5)"] +tblib = ["tblib (>=1.3.0)", "tblib (>=1.5.0)"] +yaml = ["PyYAML (>=3.10)"] +zookeeper = ["kazoo (>=1.3.1)"] +zstd = ["zstandard"] + +[[package]] +category = "main" +description = "Python package for providing Mozilla's CA Bundle." +name = "certifi" +optional = false +python-versions = "*" +version = "2020.4.5.1" + +[[package]] +category = "main" +description = "Foreign Function Interface for Python calling C code." +name = "cffi" +optional = false +python-versions = "*" +version = "1.14.0" + +[package.dependencies] +pycparser = "*" + +[[package]] +category = "main" +description = "Universal encoding detector for Python 2 and 3" +name = "chardet" +optional = false +python-versions = "*" +version = "3.0.4" + +[[package]] +category = "dev" +description = "Check MANIFEST.in in a Python source package for completeness" +name = "check-manifest" +optional = false +python-versions = ">=3.5" +version = 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"sha256:c599e4d75c98f6798c509911d08a22e6c021d074469042177c8c86fb92eefd96"}, +] diff --git a/pyproject.toml b/pyproject.toml new file mode 100644 index 0000000..c0f2f3c --- /dev/null +++ b/pyproject.toml @@ -0,0 +1,99 @@ +[tool.poetry] +name = "rero-ebooks" +version = "0.3.0" +description = "Ebooks repository for RERO." +authors = ["RERO "] +license = "GNU Affero General Public License v3.0" + +[tool.poetry.dependencies] +python = ">= 3.6, < 3.8" +## Python packages dependencies (order matters) +#------------------------------------------------------------------------------ +## Note: poetry evaluates the package constraints from the top to the bottom +## and respects only the last constraint to install the package. +## Thus the most strength constraint should be at the end. +## Imagine the following package list for the foo package with the +## most recent version equal to 5.0: +## A foo Pipfile example: +## ---------------------- +## foo = ">1.0" # first will install 5.0 +## foo = "==1.0" # then will downgrade to 1.0 +## foo = ">3.0" # finally will upgrade to 5.0 +## when the python code will be executed a conflict exception will be raised. +#------------------------------------------------------------------------------ +# Default from Invenio +Babel = ">=2.4.0" +Flask-BabelEx = ">=0.9.3" + +## Third party invenio modules used by RERO ILS +invenio-oaiharvester = {tag = "v1.0.0a4", git = "https://github.com/inveniosoftware/invenio-oaiharvester.git"} + +## Invenio 3.2.2 base modules used by RERO ILS +# same as invenio metadata extras without invenio-search-ui +invenio-indexer = ">=1.1.1,<1.2.0" +invenio-jsonschemas = ">=1.0.2,<1.1.0" +invenio-oaiserver = ">=1.1.1,<1.2.0" +invenio-pidstore = ">=1.1.0,<1.2.0" +invenio-records-rest = ">=1.6.5,<1.7.0" +invenio-records-ui = ">=1.0.1,<1.1.0" +invenio-records = ">=1.3.1,<1.4.0" + +## Default from Invenio +invenio = {version = "==3.2.2", extras = ["base", "postgresql", "auth", "elasticsearch7" ]} +uwsgi = ">=2.0" +uwsgitop = ">=0.11" +uwsgi-tools = ">=1.1.1" + +## RERO ILS specific python modules +PyYAML = ">=5.3.1" +isbnlib = ">=3.9.1" +requests = ">=2.20.0" +responses = "*" + +## Additionnal constraints on python modules +# solves datetime serialize error +# celery = "<4.3.0" + +## Deployment +# sentry +invenio-logging = { version = ">=1.2.0,<1.3.0", extras = ["sentry-sdk", "sentry"] } +lxml = ">=3.5.0,<4.2.6" +python-dotenv = "^0.13.0" + +[tool.poetry.dev-dependencies] +## Python packages development dependencies (order matters) +#---------------------------------------------------------- +## Default from Invenio +Flask-Debugtoolbar = ">=0.10.1" +Sphinx = ">=1.5.1" +check-manifest = ">=0.35" +coverage = ">=4.5.3" +isort = ">=4.3" +mock = ">=2.0.0" +marshmallow = ">=2.15.1,<3.0.0" +pydocstyle = ">=3.0.0" +pytest = ">=4.6.4" +pytest-cov = ">=2.7.1" +pytest-invenio = ">=1.2.1,<1.3.0" +pytest-mock = ">=1.6.0" +pytest-pep8 = ">=1.0.6" +pytest-random-order = ">=0.5.4" +pytest-runner = ">=3.0.0,<5" +safety = ">=1.8" +docutils = "*" +## RERO ILS specific python packages +autoflake = ">=1.3.1" +appnope = { version = "*", optional = true } + +[tool.poetry.scripts] +bootstrap = "scripts:run('./scripts/bootstrap')" +console = "scripts:run('./scripts/console')" +run-tests = "scripts:run('./run-tests.sh')" +server = "scripts:run('./scripts/server')" +setup = "scripts:run('./scripts/setup')" +tests = "scripts:run('pytest')" +update = "scripts:run('./scripts/update')" + +[build-system] +requires = ["poetry>=0.12"] +build-backend = "poetry.masonry.api" diff --git a/pytest.ini b/pytest.ini index 750d196..4783026 100644 --- a/pytest.ini +++ b/pytest.ini @@ -23,8 +23,13 @@ # as an Intergovernmental Organization or submit itself to any jurisdiction. [pytest] +live_server_scope = module pep8ignore = docs/conf.py ALL config.py E501 addopts = --pep8 --doctest-glob="*.rst" --doctest-modules --cov=rero_ebooks --cov-report=term-missing --ignore=setup.py testpaths = docs tests rero_ebooks + +# not displaying all the PendingDeprecationWarnings from invenio +filterwarnings = + ignore::PendingDeprecationWarning diff --git a/requirements.txt b/requirements.txt deleted file mode 100644 index 97784c9..0000000 --- a/requirements.txt +++ /dev/null @@ -1,31 +0,0 @@ -# -*- coding: utf-8 -*- -# -# This file is part of RERO Ebooks. -# Copyright (C) 2018 RERO. -# -# RERO Ebooks is free software; you can redistribute it -# and/or modify it under the terms of the GNU General Public License as -# published by the Free Software Foundation; either version 2 of the -# License, or (at your option) any later version. -# -# RERO Ebooks is distributed in the hope that it will be -# useful, but WITHOUT ANY WARRANTY; without even the implied warranty of -# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU -# General Public License for more details. -# -# You should have received a copy of the GNU General Public License -# along with RERO Ebooks; if not, write to the -# Free Software Foundation, Inc., 59 Temple Place, Suite 330, Boston, -# MA 02111-1307, USA. -# -# In applying this license, RERO does not -# waive the privileges and immunities granted to it by virtue of its status -# as an Intergovernmental Organization or submit itself to any jurisdiction. -# TODO: Generate this file by running the following commands: -# -# pip install -e . -# pip install pip-tools -# pip-compile -# -# You can read more about pip-compile command here: -# https://github.com/jazzband/pip-tools#example-usage-for-pip-compile diff --git a/rero_ebooks/api.py b/rero_ebooks/api.py index 4c0986a..0b9a6c4 100644 --- a/rero_ebooks/api.py +++ b/rero_ebooks/api.py @@ -31,14 +31,32 @@ from invenio_db import db from invenio_indexer.api import RecordIndexer from invenio_pidstore.errors import PIDDoesNotExistError -from invenio_pidstore.resolver import Resolver +from invenio_pidstore.models import PersistentIdentifier, PIDStatus from invenio_records.api import Record +from invenio_search.api import RecordsSearch +from sqlalchemy.orm.exc import NoResultFound from .fetchers import ebook_pid_fetcher from .minters import build_ebook_pid, ebook_pid_minter from .providers import EbookPidProvider +class EbookError: + """Base class for errors in the Ebook class.""" + + class PidMissing(Exception): + """Ebook pid missing.""" + + +class EbooksSearch(RecordsSearch): + """EbooksSearch.""" + + class Meta: + """Search only on documents index.""" + + index = 'ebooks' + + class Ebook(Record): """Ebook Record class.""" @@ -49,22 +67,37 @@ class Ebook(Record): uri_key = 'electronic_location_and_access' @classmethod - def create_or_update( - cls, - data, - id_=None, - dbcommit=False, - reindex=False, - vendor=None, - **kwargs - ): + def _merge_uri(cls, new_record, old_record): + """Merge new and old records.""" + field = cls.uri_key + new_e_res = new_record.get(field) + # change all tuples to lists + # the dojson produces tuples and we have lists in the record + for e_res in new_e_res: + for key, value in e_res.items(): + if isinstance(value, tuple): + e_res[key] = list(value) + + old_e_res = old_record.get(field) + for e_res in old_e_res: + # check if already exists! + if e_res not in new_e_res: + new_e_res.append(copy.deepcopy(e_res)) + idx = new_record['__order__'].index(field) + new_record['__order__'].insert(idx, field) + return new_record + + @classmethod + def create_or_update(cls, data, id_=None, dbcommit=False, reindex=False, + vendor=None, **kwargs): """Create or update ebook record.""" pid = build_ebook_pid(data, vendor) - record = cls.get_record_by_pid(pid, with_deleted=False) - if record: + record = cls.get_record_by_pid(pid) + if record is not None: merged_data = cls._merge_uri(data, record) - record.update(merged_data, dbcommit=dbcommit, reindex=reindex) - return record, 'updated' + record.update(merged_data, dbcommit=dbcommit, reindex=reindex, + forceindex=reindex) + return record, 'UPDATE' else: created_record = cls.create( data, @@ -72,8 +105,48 @@ def create_or_update( vendor=vendor, dbcommit=dbcommit, reindex=reindex, + forceindex=reindex ) - return created_record, 'created' + return created_record, 'CREATE' + + @classmethod + def _delete_uri(cls, not_available_record, old_record, url): + """Merge new and old records.""" + field = cls.uri_key + not_available_e_res = not_available_record.get(field) + # change all tuples to lists + # the dojson produces tuples and we have lists in the record + for e_res in not_available_e_res: + for key, value in e_res.items(): + if isinstance(value, tuple): + e_res[key] = list(value) + + old_e_res = old_record.get(field) + epub_count = 0 + for e_res in not_available_e_res: + # check if exists! + res_url = e_res.get('uniform_resource_identifier') + if res_url.startswith(url): + if e_res in old_e_res: + epub_count += 1 + old_e_res.remove(e_res) + old_record['__order__'].remove(field) + + return old_record, epub_count + + @classmethod + def remove_uri(cls, data, vendor=None, url=None, + dbcommit=False, reindex=False): + """Create or update ebook record.""" + pid = build_ebook_pid(data, vendor) + record = cls.get_record_by_pid(pid) + if record is not None: + merged_data, epub_count = cls._delete_uri(data, record, url) + record.replace(merged_data, dbcommit=dbcommit, reindex=reindex, + forceindex=reindex) + return record, 'REMOVE URIs: {count}'.format(count=epub_count) + data['pid'] = pid + return data, 'REMOVE missing' @classmethod def create( @@ -96,71 +169,61 @@ def create( record.dbcommit(reindex) return record - @classmethod - def delete( - cls, - data, - vendor=None, - delindex=True, - force=False, - ): - """Delete a ebook record.""" - pid = build_ebook_pid(data, vendor) - record = cls.get_record_by_pid(pid, with_deleted=False) - pid.delete() - result = record.delete(force=force) + def delete(self, force=False, dbcommit=False, delindex=False): + """Delete record and persistent identifier.""" + persistent_identifier = self.get_persistent_identifier(self.id) + persistent_identifier.delete() + self = super(Ebook, self).delete(force=force) + if dbcommit: + self.dbcommit() if delindex: - try: - RecordIndexer().delete(record) - except NotFoundError: - pass - return result + self.delete_from_index() + return self + + @classmethod + def get_record_by_id(cls, id, with_deleted=False): + """Get ils record by uuid.""" + return super(Ebook, cls).get_record(id, with_deleted=with_deleted) @classmethod def get_record_by_pid(cls, pid, with_deleted=False): """Get ebook record by pid value.""" assert cls.provider - resolver = Resolver( - pid_type=cls.provider.pid_type, - object_type=cls.object_type, - getter=cls.get_record, - ) try: - persistent_identifier, record = resolver.resolve(str(pid)) + persistent_identifier = PersistentIdentifier.get( + cls.provider.pid_type, + pid + ) return super(Ebook, cls).get_record( - persistent_identifier.object_uuid, with_deleted=with_deleted + persistent_identifier.object_uuid, + with_deleted=with_deleted ) + except NoResultFound: + return None except PIDDoesNotExistError: return None - @classmethod - def _merge_uri(cls, new_record, old_record): - """Merge new and old records.""" - field = cls.uri_key - new_e_res = new_record.get(field) - # change all tuples to lists - # the dojson produces tuples and we have lists in the record - for e_res in new_e_res: - for key, value in e_res.items(): - if type(value) is tuple: - e_res[key] = list(value) - - old_e_res = old_record.get(field) - for e_res in old_e_res: - # check if already exists! - if e_res not in new_e_res: - new_e_res.append(copy.deepcopy(e_res)) - new_record['__order__'].insert( - new_record['__order__'].index(field), field - ) - return new_record - - def update(self, data, dbcommit=False, reindex=False): + def update(self, data, dbcommit=False, reindex=False, forceindex=False): """Update data for record.""" super(Ebook, self).update(data) super(Ebook, self).commit() if dbcommit: self.dbcommit(reindex) + if reindex: + self.reindex(forceindex=forceindex) + return self + + def replace(self, data, dbcommit=False, reindex=False, forceindex=False): + """Replace data in record.""" + new_data = copy.deepcopy(data) + pid = new_data.get('pid') + if not pid: + raise EbookError.PidMissing( + 'missing pid={pid}'.format(pid=self.pid) + ) + self.clear() + self = self.update(new_data, dbcommit=dbcommit, reindex=reindex, + forceindex=forceindex) return self def dbcommit(self, reindex=False, forceindex=False): @@ -175,3 +238,53 @@ def reindex(self, forceindex=False): RecordIndexer(version_type="external_gte").index(self) else: RecordIndexer().index(self) + + def delete_from_index(self): + """Delete record from index.""" + try: + RecordIndexer().delete(self) + except NotFoundError: + pass + + @classmethod + def get_persistent_identifier(cls, pid): + """Get Persistent Identifier.""" + return PersistentIdentifier.get_by_object( + cls.provider.pid_type, + cls.object_type, + pid + ) + + @classmethod + def _get_all(cls, with_deleted=False): + """Get all persistent identifier records.""" + query = PersistentIdentifier.query.filter_by( + pid_type=cls.provider.pid_type + ) + if not with_deleted: + query = query.filter_by(status=PIDStatus.REGISTERED) + return query + + @classmethod + def get_all_pids(cls, with_deleted=False): + """Get all records pids. Return a generator iterator.""" + query = cls._get_all(with_deleted=with_deleted) + for identifier in query: + yield identifier.pid_value + + @classmethod + def get_all_ids(cls, with_deleted=False): + """Get all records uuids. Return a generator iterator.""" + query = cls._get_all(with_deleted=with_deleted) + for identifier in query: + yield identifier.object_uuid + + @classmethod + def count(cls, with_deleted=False): + """Get record count.""" + return cls._get_all(with_deleted=with_deleted).count() + + @property + def pid(self): + """Get ebook record pid value.""" + return self.get('pid') diff --git a/rero_ebooks/apiharvester/cli.py b/rero_ebooks/apiharvester/cli.py index c394afc..0023145 100644 --- a/rero_ebooks/apiharvester/cli.py +++ b/rero_ebooks/apiharvester/cli.py @@ -36,7 +36,7 @@ from rero_ebooks.apiharvester.tasks import harvest_records from .models import ApiHarvestConfig -from .utils import api_source +from .utils import add_set, api_source datastore = LocalProxy(lambda: current_app.extensions['security'].datastore) @@ -108,6 +108,22 @@ def api_source_config_from_file(configfile, update): ) +@apiharvester.command('initsets') +@click.argument('configfile', type=click.File('rb')) +@click.option('-v', '--verbose', 'verbose', is_flag=True, default=False) +@with_appcontext +def init_oai_sets(configfile, verbose): + """Init OAIsets.""" + configs = yaml.load(configfile, Loader=yaml.FullLoader) + for name, values in sorted(configs.items()): + description = values.get('description', '...') + pattern = values['pattern'] + msg = add_set(spec=name, name=name, description=description, + pattern=pattern) + if verbose: + click.echo(msg) + + @apiharvester.command('harvest') @click.option('-n', '--name', default=None, help='Name of persistent configuration to use.') diff --git a/rero_ebooks/apiharvester/errors.py b/rero_ebooks/apiharvester/errors.py new file mode 100644 index 0000000..05cc6e5 --- /dev/null +++ b/rero_ebooks/apiharvester/errors.py @@ -0,0 +1,51 @@ +# -*- coding: utf-8 -*- +# +# This file is part of RERO EBOOKS. +# Copyright (C) 2017 RERO. +# +# RERO EBOOKS is free software; you can redistribute it +# and/or modify it under the terms of the GNU General Public License as +# published by the Free Software Foundation; either version 2 of the +# License, or (at your option) any later version. +# +# RERO EBOOKS is distributed in the hope that it will be +# useful, but WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU +# General Public License for more details. +# +# You should have received a copy of the GNU General Public License +# along with RERO EBOOKS; if not, write to the +# Free Software Foundation, Inc., 59 Temple Place, Suite 330, Boston, +# MA 02111-1307, USA. +# +# In applying this license, RERO does not +# waive the privileges and immunities granted to it by virtue of its status +# as an Intergovernmental Organization or submit itself to any jurisdiction. + +"""Api harvester errors.""" + +from __future__ import absolute_import, print_function + + +class ApiHarvesterError(Exception): + """Base exception for apiharvester.""" + + +class ApiRequestError(ApiHarvesterError): + """Error with the Api request.""" + + +class NameOrUrlMissing(ApiHarvesterError): + """Name or url for harvesting missing.""" + + +class WrongDateCombination(ApiHarvesterError): + """'Until' date is larger that 'from' date.""" + + +class IdentifiersOrDates(ApiHarvesterError): + """Identifiers cannot be used in combination with dates.""" + + +class ApiHarvesterConfigNotFound(ApiHarvesterError): + """No ApiHarvesterConfig was found.""" diff --git a/rero_ebooks/apiharvester/models.py b/rero_ebooks/apiharvester/models.py index d8b722c..40a1177 100644 --- a/rero_ebooks/apiharvester/models.py +++ b/rero_ebooks/apiharvester/models.py @@ -29,14 +29,12 @@ import datetime from invenio_db import db -from invenio_pidstore.models import RecordIdentifier -class ApiHarvestConfig(RecordIdentifier): - """Sequence generator for Document identifiers.""" +class ApiHarvestConfig(db.Model): + """Represents a ApiHarvestConfig record.""" __tablename__ = 'apiharvest_config' - __mapper_args__ = {'concrete': True} id = db.Column(db.Integer, primary_key=True) url = db.Column(db.String(255), nullable=False, server_default='') @@ -56,4 +54,6 @@ def update_lastrun(self, new_date=None): """Update the 'lastrun' attribute of object to now.""" self.lastrun = new_date or datetime.datetime.now() self.save() - db.session.commit() + + +__all__ = ('ApiHarvestConfig',) diff --git a/rero_ebooks/apiharvester/tasks.py b/rero_ebooks/apiharvester/tasks.py index 27443a4..fcfa212 100644 --- a/rero_ebooks/apiharvester/tasks.py +++ b/rero_ebooks/apiharvester/tasks.py @@ -31,13 +31,15 @@ from flask import current_app from invenio_records_rest.utils import obj_or_import_string -from .models import ApiHarvestConfig +from .utils import get_apiharvest_object @shared_task(ignore_result=True, soft_time_limit=3600) def harvest_records(name, from_date=None, max=0, verbose=False): """Harvest records.""" - config = ApiHarvestConfig.query.filter_by(name=name).first() + count = -1 + + config = get_apiharvest_object(name=name) if config: if not from_date: from_date = config.lastrun.isoformat() @@ -53,18 +55,28 @@ def harvest_records(name, from_date=None, max=0, verbose=False): HarvestClass = obj_or_import_string(config.classname) harvest = HarvestClass(config=config, verbose=verbose) config.update_lastrun() - total, count = harvest.get_records(from_date=from_date, max=max) - msg = 'API harvest {total} items | got {count} from {name}'.format( + total = harvest.get_records( + from_date=from_date, + max=max + ) + msg = ('API harvest items={total} available={count_available} |' + ' got={count} new={count_new} updated={count_upd}' + ' deleted={count_del}' + ' from {name}.').format( total=total, - count=count, + count_available=harvest.count_available, + count=harvest.count, + count_new=harvest.count_new, + count_upd=harvest.count_upd, + count_del=harvest.count_del, name=name ) if verbose: click.echo(msg) current_app.logger.info(msg) + count = harvest.count else: current_app.logger.error('No config found: {name}'.format( name=name )) - count = -1 return count diff --git a/rero_ebooks/apiharvester/utils.py b/rero_ebooks/apiharvester/utils.py index 247227f..929bfe2 100644 --- a/rero_ebooks/apiharvester/utils.py +++ b/rero_ebooks/apiharvester/utils.py @@ -26,12 +26,37 @@ from __future__ import absolute_import, print_function +from time import sleep + from flask import current_app from invenio_db import db +from invenio_oaiserver.models import OAISet +from sqlalchemy.exc import OperationalError +from .errors import ApiHarvesterConfigNotFound from .models import ApiHarvestConfig +def add_set(spec, name, pattern, description='...'): + """Add OAI set. + + :param spec: set identifier + :param name: human readable name of the set + :param pattern: search pattern to get records + :param description: human readable description + """ + try: + oaiset = OAISet(spec=spec, name=name, description=description) + oaiset.search_pattern = pattern + db.session.add(oaiset) + db.session.commit() + msg = 'OAIset added: {name}'.format(name=name) + except Exception as err: + db.session.rollback() + msg = 'OAIset exist: {name}'.format(name=name) + return msg + + def api_source(name, url='', classname=None, code='', update=False): """Add ApiHarvestConfig do DB. @@ -42,6 +67,7 @@ def api_source(name, url='', classname=None, code='', update=False): update: update configuration if exist """ with current_app.app_context(): + msg = 'No Update' source = ApiHarvestConfig.query.filter_by(name=name).first() if not source: source = ApiHarvestConfig( @@ -52,7 +78,7 @@ def api_source(name, url='', classname=None, code='', update=False): ) source.save() db.session.commit() - return 'Add' + msg = 'Add' elif update: source.name = name msg = [] @@ -66,5 +92,35 @@ def api_source(name, url='', classname=None, code='', update=False): source.code = code msg.append('code:{}'.format(code)) db.session.commit() - return 'Update {}'.format(', '.join(msg)) - return 'No Update' + msg = 'Update {}'.format(', '.join(msg)) + return msg + + +def get_apiharvest_object(name): + """Query and returns an ApiHarvestConfig object based on its name. + + :param name: The name of the ApiHarvestConfig object. + :return: The ApiHarvestConfig object. + """ + sleep_time = 1 + while sleep_time < 600: + try: + obj = ApiHarvestConfig.query.filter_by(name=name).first() + sleep_time = 1000 + except OperationalError as err: + db.session.rollback() + current_app.logger.error( + 'ApiHarvestConfig: wait: {sleep_time} seconds {err}'.format( + sleep_time=sleep_time, + err='OperationalError' + ) + ) + sleep(sleep_time) + sleep_time *= 2 + if not obj: + raise ApiHarvesterConfigNotFound( + 'Unable to find ApiHarvesterConfig obj with name %s.' + % name + ) + + return obj diff --git a/rero_ebooks/cantook/api.py b/rero_ebooks/cantook/api.py index b13564f..3a5be25 100644 --- a/rero_ebooks/cantook/api.py +++ b/rero_ebooks/cantook/api.py @@ -52,14 +52,20 @@ class ApiCantook(): def __init__(self, config, file=None, indent=None, verbose=False): """Class init.""" self.config = config + self._url = self.config.url + self._code = self.config.code self.verbose = verbose self.file = file if self.file: file.write('[\n') self.indent = indent self._count = 0 + self._count_new = 0 + self._count_upd = 0 + self._count_del = 0 self._max = 0 self._vendor = 'cantook' + self._available_ids = {} @classmethod def get_config(cls, name): @@ -76,7 +82,7 @@ def get_request_url(self, start_date='1990-01-01', page=1): start_date=start_date, page=page ) - return self.config.url + '/v1/resources.json?{params}'.format( + return self._url + '/v1/resources.json?{params}'.format( params=params ) @@ -96,8 +102,8 @@ def add_nonpublic_note(self, record): '/' )[:3] ) - if url == self.config.url: - electronic_location['nonpublic_note'] = self.config.code + if url == self._url: + electronic_location['nonpublic_note'] = self._code new_electronic_locations.append(electronic_location) return record @@ -113,21 +119,49 @@ def create_update_record(self, record): ) return record, msg + def remove_uri(self, record): + """Create new record or update record.""" + record = cantook_json.do(record) + record, msg = Ebook.remove_uri( + data=record, + vendor=self._vendor, + url=self._url, + dbcommit=True, + reindex=True + ) + return record, msg + + def msg_text(self, pid, msg): + """Logging message text.""" + return '{count}: {vendor}:{code} {pid} = {msg}'.format( + vendor=self._vendor, + code=self._code, + count=self._count, + pid=pid, + msg=msg + ) + def process_records(self, records): """Process records.""" for record in records: self._count += 1 if self._count < self._max or self._max == 0: - self.save_record(record) - record, msg = self.create_update_record(record) - if self.verbose: - click.echo( - '{count}: {pid} {msg}'.format( - count=self._count, - pid=record['pid'], - msg=msg - ) - ) + if self._available_ids.get(record['id']): + self.save_record(record) + record, msg = self.create_update_record(record) + if msg == 'UPDATE': + self._count_upd += 1 + else: + self._count_new += 1 + if self.verbose: + click.echo(self.msg_text(pid=record['pid'], + msg=msg)) + else: + record, msg = self.remove_uri(record) + self._count_del += 1 + if self.verbose: + click.echo(self.msg_text(pid=record['pid'], + msg=msg)) else: break @@ -136,6 +170,44 @@ def verbose_print(self, msg): if self.verbose: click.echo(msg) + def init_available_ids(self, from_date): + """Get all aavailable pids. + + from_date: record changed after this date to get + """ + url = self.get_request_url(start_date=from_date, page=1) + url += '&available=1' + request = requests_get(url) + total_pages = int(request.headers.get('X-Total-Pages', 0)) + total_items = int(request.headers.get('X-Total-Items', 0)) + # per_pages = int(request.headers.get('X-Per-Page', 0)) + current_page = int(request.headers.get('X-Current-Page', 0)) + count = 0 + self._available_ids = {} + while (request.status_code == requests_codes.ok and + current_page <= total_pages): + self.verbose_print( + 'API page: {page} url: {url}'.format( + page=current_page, + url=url + ) + ) + for record in request.json().get('resources', []): + count += 1 + self._available_ids[record['id']] = count + # get next page and update current_page + url = self.get_request_url( + start_date=from_date, + page=current_page+1 + ) + url += '&available=1' + request = requests_get(url) + current_page = int(request.headers.get('X-Current-Page', 0)) + if total_items != count: + # we had an ERROR + raise('ERROR to get all available ids') + return self._available_ids + def get_records(self, from_date, max=0, file=None): """Get cantook records. @@ -151,6 +223,7 @@ def get_records(self, from_date, max=0, file=None): total_items = int(request.headers.get('X-Total-Items', 0)) # per_pages = int(request.headers.get('X-Per-Page', 0)) current_page = int(request.headers.get('X-Current-Page', 0)) + self.init_available_ids(from_date=from_date) while (request.status_code == requests_codes.ok and current_page <= total_pages and (self._count < self._max or self._max == 0)): @@ -171,10 +244,36 @@ def get_records(self, from_date, max=0, file=None): if self.file: file.write(']') if ( - (max != 0 and self._count != max) or + (max != 0 and total_items >= max and self._count != max) or + (max != 0 and total_items < max and self._count != total_items) or (max == 0 and total_items != self._count) ): # we had an ERROR raise('ERROR not all records harvested') - return total_items, self._count + return total_items + + @property + def count(self): + """Get count.""" + return self._count + + @property + def count_new(self): + """Get new count.""" + return self._count_new + + @property + def count_upd(self): + """Get updated count.""" + return self._count_upd + + @property + def count_del(self): + """Get delted count.""" + return self._count_del + + @property + def count_available(self): + """Get available count.""" + return len(self._available_ids) diff --git a/rero_ebooks/celery.py b/rero_ebooks/celery.py new file mode 100644 index 0000000..5814fc7 --- /dev/null +++ b/rero_ebooks/celery.py @@ -0,0 +1,47 @@ +# -*- coding: utf-8 -*- +# +# This file is part of RERO EBOOKS. +# Copyright (C) 2018 RERO. +# +# RERO EBOOKS is free software; you can redistribute it +# and/or modify it under the terms of the GNU General Public License as +# published by the Free Software Foundation; either version 2 of the +# License, or (at your option) any later version. +# +# RERO EBOOKS is distributed in the hope that it will be +# useful, but WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU +# General Public License for more details. +# +# You should have received a copy of the GNU General Public License +# along with RERO EBOOKS; if not, write to the +# Free Software Foundation, Inc., 59 Temple Place, Suite 330, Boston, +# MA 02111-1307, USA. +# +# In applying this license, RERO does not +# waive the privileges and immunities granted to it by virtue of its status +# as an Intergovernmental Organization or submit itself to any jurisdiction. + +"""Celery application for Invenio flavours.""" + +from __future__ import absolute_import, print_function + +from dotenv import load_dotenv +from flask_celeryext import create_celery_app +from invenio_app.factory import create_ui + +# load .env and .flaskenv +load_dotenv() + +celery = create_celery_app(create_ui( + SENTRY_TRANSPORT='raven.transport.http.HTTPTransport', + RATELIMIT_ENABLED=False, +)) +"""Celery application for Invenio. +Overrides SENTRY_TRANSPORT wih synchronous HTTP transport since Celery does not +deal nicely with the default threaded transport. +""" + +# Trigger an app log message upon import. This makes Sentry logging +# work with `get_task_logger(__name__)`. +celery.flask_app.logger.info('Created Celery app') diff --git a/rero_ebooks/config.py b/rero_ebooks/config.py index 3ab08f6..b673f0e 100644 --- a/rero_ebooks/config.py +++ b/rero_ebooks/config.py @@ -37,8 +37,6 @@ from invenio_indexer.api import RecordIndexer from invenio_search import RecordsSearch -from rero_ebooks.apiharvester.tasks import harvest_records # needed by cellery - def _(x): """Identity function used to trigger string extraction.""" @@ -47,8 +45,10 @@ def _(x): # Rate limiting # ============= -#: Storage for ratelimiter. RATELIMIT_STORAGE_URL = 'redis://localhost:6379/3' +RATELIMIT_DEFAULT = '5000/second' +RATELIMIT_ENABLED = False + # I18N # ==== @@ -121,6 +121,7 @@ def _(x): #: URL of backend for result storage (default is Redis). CELERY_RESULT_BACKEND = 'redis://localhost:6379/2' #: Scheduled tasks configuration (aka cronjobs). +# imports have to be configured in setup.py:invenio_celery.tasks CELERY_BEAT_SCHEDULE = { 'indexer': { 'task': 'invenio_indexer.tasks.process_bulk_queue', @@ -136,15 +137,15 @@ def _(x): # 'schedule': timedelta(minutes=60), # 'kwargs': dict(name='NJ') # }, - 'Apiharvester-VS': { + 'Apiharvester-NJ': { 'task': 'rero_ebooks.apiharvester.tasks.harvest_records', 'schedule': timedelta(minutes=60), - 'kwargs': dict(name='VS'), + 'kwargs': dict(name='NJ'), }, - 'Apiharvester-NJ': { + 'Apiharvester-VS': { 'task': 'rero_ebooks.apiharvester.tasks.harvest_records', 'schedule': timedelta(minutes=60), - 'kwargs': dict(name='NJ'), + 'kwargs': dict(name='VS') }, } CELERY_BROKER_HEARTBEAT = 0 @@ -184,6 +185,44 @@ def _(x): #: should be set to the correct host and it is strongly recommended to only #: route correct hosts to the application. APP_ALLOWED_HOSTS = ['localhost', '127.0.0.1'] +# TODO: review theses rules for security purposes +APP_DEFAULT_SECURE_HEADERS = { + # disabled as https is not used by the application: + # https is done by the haproxy + 'force_https': False, + 'force_https_permanent': False, + 'force_file_save': False, + 'frame_options': 'sameorigin', + 'frame_options_allow_from': None, + 'strict_transport_security': True, + 'strict_transport_security_preload': False, + 'strict_transport_security_max_age': 31556926, # One year in seconds + 'strict_transport_security_include_subdomains': True, + 'content_security_policy': { + 'default-src': ['*'], + 'img-src': [ + '*', + "'self'", + 'data:' + ], + 'style-src': [ + '*', + "'unsafe-inline'" + ], + 'script-src': [ + "'self'", + "'unsafe-eval'", + "'unsafe-inline'", + # '*.rero.ch', + 'https://www.googletagmanager.com', + 'https://www.google-analytics.com' + ] + }, + 'content_security_policy_report_uri': None, + 'content_security_policy_report_only': False, + 'session_cookie_secure': True, + 'session_cookie_http_only': True, +} # Indexer # ======= @@ -201,6 +240,12 @@ def _(x): #: OAI default ES index OAISERVER_RECORD_INDEX = 'ebooks' +OAISERVER_XSL_URL = '/static/xsl/oai.xsl' + +OAISERVER_ADMIN_EMAILS = [ + 'software@rero.ch', +] + # Debug # ===== # Flask-DebugToolbar is by default enabled when the application is running in diff --git a/rero_ebooks/dojson/marc21/fields/bd00x.py b/rero_ebooks/dojson/marc21/fields/bd00x.py index 363d94a..52a6301 100644 --- a/rero_ebooks/dojson/marc21/fields/bd00x.py +++ b/rero_ebooks/dojson/marc21/fields/bd00x.py @@ -9,8 +9,6 @@ """MARC 21 model definition.""" -from dojson import utils - from ..model import marc21 diff --git a/rero_ebooks/dojson/marc21/model.py b/rero_ebooks/dojson/marc21/model.py index a4f7938..9303506 100644 --- a/rero_ebooks/dojson/marc21/model.py +++ b/rero_ebooks/dojson/marc21/model.py @@ -24,7 +24,7 @@ """Marc21 data conversion.""" -from dojson import Overdo, utils +from dojson import Overdo marc21 = Overdo(entry_point_group='rero_ebooks.marc21') """MARC 21 Format for Bibliographic Data.""" diff --git a/rero_ebooks/ext.py b/rero_ebooks/ext.py index 6c917be..7b9aa50 100644 --- a/rero_ebooks/ext.py +++ b/rero_ebooks/ext.py @@ -24,11 +24,7 @@ """RERO DOC Invenio application.""" - -from invenio_oaiharvester.signals import oaiharvest_finished - from . import config -from .receivers import publish_harvested_records class ReroEBooks(object): @@ -38,7 +34,6 @@ def __init__(self, app=None): """Extension initialization.""" if app: self.init_app(app) - self.register_signals(app) def init_app(self, app): """Flask application initialization.""" @@ -50,8 +45,3 @@ def init_config(self, app): for k in dir(config): if k.startswith('REROEBOOKS_APP_'): app.config.setdefault(k, getattr(config, k)) - - @staticmethod - def register_signals(app): - """Register Zenodo Deposit signals.""" - oaiharvest_finished.connect(publish_harvested_records, weak=False) diff --git a/rero_ebooks/fetchers.py b/rero_ebooks/fetchers.py index 56e9c70..5c5f787 100644 --- a/rero_ebooks/fetchers.py +++ b/rero_ebooks/fetchers.py @@ -45,5 +45,5 @@ def ebook_pid_fetcher(record_uuid, data): return FetchedPID( provider=EbookPidProvider, pid_type=EbookPidProvider.pid_type, - pid_value=str(data[pid_field]), + pid_value=str(data.get(pid_field)), ) diff --git a/rero_ebooks/mappings/v6/ebooks/ebook-v1.0.0.json b/rero_ebooks/mappings/v6/ebooks/ebook-v1.0.0.json deleted file mode 100644 index 92249eb..0000000 --- a/rero_ebooks/mappings/v6/ebooks/ebook-v1.0.0.json +++ /dev/null @@ -1,7991 +0,0 @@ -{ - "settings": { - "index.percolator.map_unmapped_fields_as_string": true, - "index.mapping.total_fields.limit": 3000 - }, - "mappings": { - "ebook-v1.0.0": { - "numeric_detection": true, - "properties": { - "pid": { - "type": "keyword" - }, - "_oai": { - "properties": { - "id": { - "type": "keyword" - }, - "sets": { - "type": "keyword" - }, - "updated": { - "type": "date" - } - } - }, - "report_number": { - "type": "object", - "properties": { - "report_number": { - "type": "text" - }, - "canceled_invalid_report_number": { - "type": "text" - }, - "linkage": { - "type": "text" - }, - "field_link_and_sequence_number": { - "type": "text" - } - } - }, - "organization_and_arrangement_of_materials": { - "type": "object", - "properties": { - "hierarchical_level": { - "type": "text" - }, - "arrangement": { - "type": "text" - }, - "materials_specified": { - "type": "text" - }, - "organization": { - "type": "text" - }, - "field_link_and_sequence_number": { - "type": "text" - }, - "linkage": { - "type": "text" - } - } - }, - "subject_added_entry_geographic_name": { - "type": "object", - "properties": { - "form_subdivision": { - "type": "text" - }, - "general_subdivision": { - "type": "text" - }, - "materials_specified": { - "type": "text" - }, - "thesaurus": { - "type": "text" - }, - "field_link_and_sequence_number": { - "type": "text" - }, - "relator_term": { - "type": "text" - }, - "relator_code": { - "type": "text" - }, - "source_of_heading_or_term": { - "type": "text" - }, - "authority_record_control_number_or_standard_number": { - "type": "text" - }, - "geographic_name": { - "type": "text" - }, - "geographic_subdivision": { - "type": "text" - }, - "linkage": { - "type": "text" - }, - "chronological_subdivision": { - "type": "text" - } - } - }, - "source_of_description_note": { - "type": "object", - "properties": { - "institution_to_which_field_applies": { - "type": "text" - }, - "source_of_description_note": { - "type": "text" - }, - "linkage": { - "type": "text" - }, - "field_link_and_sequence_number": { - "type": "text" - } - } - }, - "restrictions_on_access_note": { - "type": "object", - "properties": { - "restriction": { - "type": "text" - }, - "authorized_users": { - "type": "text" - }, - "jurisdiction": { - "type": "text" - }, - "field_link_and_sequence_number": { - "type": "text" - }, - "standardized_terminology_for_access_restriction": { - "type": "text" - }, - "uniform_resource_identifier": { - "type": "text" - }, - "authorization": { - "type": "text" - }, - "materials_specified": { - "type": "text" - }, - "source_of_term": { - "type": "text" - }, - "physical_access_provisions": { - "type": "text" - }, - "terms_governing_access": { - "type": "text" - }, - "institution_to_which_field_applies": { - "type": "text" - }, - "linkage": { - "type": "text" - } - } - }, - "citation_references_note": { - "type": "object", - "properties": { - "location_within_source": { - "type": "text" - }, - "name_of_source": { - "type": "text" - }, - "coverage_of_source": { - "type": "text" - }, - "international_standard_serial_number": { - "type": "text" - }, - "materials_specified": { - "type": "text" - }, - "coverage_location_in_source": { - "type": "text" - }, - "uniform_resource_identifier": { - "type": "text" - }, - "field_link_and_sequence_number": { - "type": "text" - }, - "linkage": { - "type": "text" - } - } - }, - "subject_added_entry_chronological_term": { - "type": "object", - "properties": { - "form_subdivision": { - "type": "text" - }, - "general_subdivision": { - "type": "text" - }, - "chronological_term": { - "type": "text" - }, - "thesaurus": { - "type": "text" - }, - "field_link_and_sequence_number": { - "type": "text" - }, - "materials_specified": { - "type": "text" - }, - "authority_record_control_number_or_standard_number": { - "type": "text" - }, - "type_of_date_or_time_period": { - "type": "text" - }, - "source_of_heading_or_term": { - "type": "text" - }, - "geographic_subdivision": { - "type": "text" - }, - "linkage": { - "type": "text" - }, - "chronological_subdivision": { - "type": "text" - } - } - }, - "ownership_and_custodial_history": { - "type": "object", - "properties": { - "privacy": { - "type": "text" - }, - "institution_to_which_field_applies": { - "type": "text" - }, - "field_link_and_sequence_number": { - "type": "text" - }, - "uniform_resource_identifier": { - "type": "text" - }, - "materials_specified": { - "type": "text" - }, - "linkage": { - "type": "text" - }, - "history": { - "type": "text" - } - } - }, - "language_code": { - "type": "object", - "properties": { - "translation_indication": { - "type": "text" - }, - "language_code_of_intermediate_translations": { - "type": "text" - }, - "language_code_of_librettos": { - "type": "text" - }, - "language_code_of_summary_or_abstract": { - "type": "text" - }, - "language_code_of_accompanying_material_other_than_librettos": { - "type": "text" - }, - "language_code_of_table_of_contents": { - "type": "text" - }, - "language_code_of_original_accompanying_materials_other_than_librettos": { - "type": "text" - }, - "field_link_and_sequence_number": { - "type": "text" - }, - "language_code_of_text_sound_track_or_separate_title": { - "type": "text" - }, - "language_code_of_subtitles_or_captions": { - "type": "text" - }, - "language_code_of_sung_or_spoken_text": { - "type": "text" - }, - "language_code_of_original": { - "type": "text" - }, - "language_code_of_original_libretto": { - "type": "text" - }, - "source_of_code": { - "type": "text" - }, - "linkage": { - "type": "text" - } - } - }, - "added_entry_corporate_name": { - "type": "object", - "properties": { - "type_of_added_entry": { - "type": "text" - }, - "language_of_a_work": { - "type": "text" - }, - "version": { - "type": "text" - }, - "affiliation": { - "type": "text" - }, - "date_of_meeting_or_treaty_signing": { - "type": "text" - }, - "form_subheading": { - "type": "text" - }, - "key_for_music": { - "type": "text" - }, - "relator_code": { - "type": "text" - }, - "linkage": { - "type": "text" - }, - "miscellaneous_information": { - "type": "text" - }, - "medium_of_performance_for_music": { - "type": "text" - }, - "arranged_statement_for_music": { - "type": "text" - }, - "medium": { - "type": "text" - }, - "corporate_name_or_jurisdiction_name_as_entry_element": { - "type": "text" - }, - "date_of_a_work": { - "type": "text" - }, - "type_of_corporate_name_entry_element": { - "type": "text" - }, - "subordinate_unit": { - "type": "text" - }, - "title_of_a_work": { - "type": "text" - }, - "number_of_part_section_meeting": { - "type": "text" - }, - "relationship_information": { - "type": "text" - }, - "location_of_meeting": { - "type": "text" - }, - "institution_to_which_field_applies": { - "type": "text" - }, - "field_link_and_sequence_number": { - "type": "text" - }, - "relator_term": { - "type": "text" - }, - "international_standard_serial_number": { - "type": "text" - }, - "materials_specified": { - "type": "text" - }, - "authority_record_control_number_or_standard_number": { - "type": "text" - }, - "name_of_part_section_of_a_work": { - "type": "text" - } - } - }, - "added_entry_taxonomic_identification": { - "type": "object", - "properties": { - "taxonomic_category": { - "type": "text" - }, - "source_of_taxonomic_identification": { - "type": "text" - }, - "field_link_and_sequence_number": { - "type": "text" - }, - "non_public_note": { - "type": "text" - }, - "taxonomic_name": { - "type": "text" - }, - "authority_record_control_number_or_standard_number": { - "type": "text" - }, - "public_note": { - "type": "text" - }, - "linkage": { - "type": "text" - }, - "common_or_alternative_name": { - "type": "text" - } - } - }, - "number_of_musical_instruments_or_voices_code": { - "type": "object", - "properties": { - "soloist": { - "type": "text" - }, - "source_of_code": { - "type": "text" - }, - "performer_or_ensemble": { - "type": "text" - }, - "field_link_and_sequence_number": { - "type": "text" - } - } - }, - "original_version_note": { - "type": "object", - "properties": { - "material_specific_details": { - "type": "text" - }, - "publication_distribution_of_original": { - "type": "text" - }, - "location_of_original": { - "type": "text" - }, - "main_entry_of_original": { - "type": "text" - }, - "series_statement_of_original": { - "type": "text" - }, - "key_title_of_original": { 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+ "authority_record_control_number_or_standard_number": { + "type": "text" + }, + "bibliographic_record_control_number": { + "type": "text" + }, + "name_of_part_section_of_a_work": { + "type": "text" + } + } + }, + "holding_institution": { + "type": "object", + "properties": { + "holding_institution": { + "type": "text" + }, + "field_link_and_sequence_number": { + "type": "text" + } + } + }, + "main_entry_uniform_title": { + "type": "object", + "properties": { + "arranged_statement_for_music": { + "type": "text" + }, + "medium": { + "type": "text" + }, + "language_of_a_work": { + "type": "text" + }, + "date_of_a_work": { + "type": "text" + }, + "form_subheading": { + "type": "text" + }, + "number_of_part_section_of_a_work": { + "type": "text" + }, + "key_for_music": { + "type": "text" + }, + "nonfiling_characters": { + "type": "double" + }, + "title_of_a_work": { + "type": "text" + }, + "date_of_treaty_signing": { + "type": "text" + }, + "version": { + "type": "text" + }, + "uniform_title": { + "type": "text" + }, + "miscellaneous_information": { + "type": "text" + }, + "authority_record_control_number_or_standard_number": { + "type": "text" + }, + "name_of_part_section_of_a_work": { + "type": "text" + }, + "field_link_and_sequence_number": { + "type": "text" + }, + "linkage": { + "type": "text" + }, + "medium_of_performance_for_music": { + "type": "text" + } + } + }, + "main_entry_meeting_name": { + "type": "object", + "properties": { + "location_of_meeting": { + "type": "text" + }, + "name_of_part_section_of_a_work": { + "type": "text" + }, + "language_of_a_work": { + "type": "text" + }, + "date_of_meeting": { + "type": "text" + }, + "form_subheading": { + "type": "text" + }, + "miscellaneous_information": { + "type": "text" + }, + "subordinate_unit": { + "type": "text" + }, + "meeting_name_or_jurisdiction_name_as_entry_element": { + "type": "text" + }, + "title_of_a_work": { + "type": "text" + }, + "number_of_part_section_meeting": { + "type": "text" + }, + "affiliation": { + "type": "text" + }, + "type_of_meeting_name_entry_element": { + "type": "text" + }, + "relator_code": { + "type": "text" + }, + "linkage": { + "type": "text" + }, + "date_of_a_work": { + "type": "text" + }, + "authority_record_control_number_or_standard_number": { + "type": "text" + }, + "field_link_and_sequence_number": { + "type": "text" + }, + "relator_term": { + "type": "text" + }, + "name_of_meeting_following_jurisdiction_name_entry_element": { + "type": "text" + } + } + }, + "system_details_note": { + "type": "object", + "properties": { + "display_text": { + "type": "text" + }, + "institution_to_which_field_applies": { + "type": "text" + }, + "system_details_note": { + "type": "text" + }, + "field_link_and_sequence_number": { + "type": "text" + }, + "uniform_resource_identifier": { + "type": "text" + }, + "materials_specified": { + "type": "text" + }, + "linkage": { + "type": "text" + } + } + }, + "copy_and_version_identification_note": { + "type": "object", + "properties": { + "version_identification": { + "type": "text" + }, + "institution_to_which_field_applies": { + "type": "text" + }, + "copy_identification": { + "type": "text" + }, + "presentation_format": { + "type": "text" + }, + "field_link_and_sequence_number": { + "type": "text" + }, + "identifying_markings": { + "type": "text" + }, + "materials_specified": { + "type": "text" + }, + "linkage": { + "type": "text" + }, + "number_of_copies": { + "type": "text" + } + } + }, + "former_title_complexity_note": { + "type": "object", + "properties": { + "former_title_complexity_note": { + "type": "text" + }, + "linkage": { + "type": "text" + }, + "field_link_and_sequence_number": { + "type": "text" + } + } + }, + "international_standard_serial_number": { + "type": "object", + "properties": { + "canceled_issn": { + "type": "text" + }, + "level_of_international_interest": { + "type": "text" + }, + "field_link_and_sequence_number": { + "type": "text" + }, + "source": { + "type": "text" + }, + "international_standard_serial_number": { + "type": "text" + }, + "canceled_issn_l": { + "type": "text" + }, + "issn_l": { + "type": "text" + }, + "linkage": { + "type": "text" + }, + "incorrect_issn": { + "type": "text" + } + } + }, + "production_publication_distribution_manufacture_and_copyright_notice": { + "type": "object", + "properties": { + "date_of_production_publication_distribution_manufacture_or_copyright_notice": { + "type": "text" + }, + "place_of_production_publication_distribution_manufacture": { + "type": "text" + }, + "field_link_and_sequence_number": { + "type": "text" + }, + "sequence_of_statements": { + "type": "text" + }, + "name_of_producer_publisher_distributor_manufacturer": { + "type": "text" + }, + "materials_specified": { + "type": "text" + }, + "function_of_entity": { + "type": "text" + }, + "linkage": { + "type": "text" + } + } + }, + "type_of_computer_file_or_data_note": { + "type": "object", + "properties": { + "type_of_computer_file_or_data_note": { + "type": "text" + }, + "display_constant_controller": { + "type": "text" + }, + "linkage": { + "type": "text" + }, + "field_link_and_sequence_number": { + "type": "text" + } + } + } + }, + "date_detection": true + } +} diff --git a/rero_ebooks/receivers.py b/rero_ebooks/receivers.py deleted file mode 100644 index f04ab89..0000000 --- a/rero_ebooks/receivers.py +++ /dev/null @@ -1,47 +0,0 @@ -# -*- coding: utf-8 -*- -# -# This file is part of RERO Ebooks. -# Copyright (C) 2018 RERO. -# -# RERO Ebooks is free software; you can redistribute it -# and/or modify it under the terms of the GNU General Public License as -# published by the Free Software Foundation; either version 2 of the -# License, or (at your option) any later version. -# -# RERO Ebooks is distributed in the hope that it will be -# useful, but WITHOUT ANY WARRANTY; without even the implied warranty of -# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU -# General Public License for more details. -# -# You should have received a copy of the GNU General Public License -# along with RERO Ebooks; if not, write to the -# Free Software Foundation, Inc., 59 Temple Place, Suite 330, Boston, -# MA 02111-1307, USA. -# -# In applying this license, RERO does not -# waive the privileges and immunities granted to it by virtue of its status -# as an Intergovernmental Organization or submit itself to any jurisdiction. - -"""Signals connections for RERO ebooks.""" - -from dojson.contrib.marc21.utils import create_record - -from rero_ebooks.tasks import create_records, delete_records - -from .dojson.marc21 import marc21 - - -def publish_harvested_records(sender=None, records=[], *args, **kwargs): - """Create, index the harvested records.""" - # name = kwargs['name'] - converted_records = [] - deleted_records = [] - for record in records: - rec = create_record(record.xml) - rec = marc21.do(rec) - if record.deleted: - deleted_records.append(rec) - else: - converted_records.append(rec) - create_records(converted_records) - delete_records(deleted_records) diff --git a/rero_ebooks/static/xsl/oai.xsl b/rero_ebooks/static/xsl/oai.xsl new file mode 100644 index 0000000..72035e5 --- /dev/null +++ b/rero_ebooks/static/xsl/oai.xsl @@ -0,0 +1,705 @@ + + + + + + + + + + + + + + + +td.value { + vertical-align: top; + padding-left: 1em; + padding: 3px; +} +td.key { + background-color: #e0e0ff; + padding: 3px; + text-align: right; + border: 1px solid #c0c0c0; + white-space: nowrap; + font-weight: bold; + vertical-align: top; +} +td.tag { + background-color: #ffffe0; + padding: 3px; + text-align: left; + border: 1px solid #c0c0c0; + white-space: nowrap; + font-weight: bold; + vertical-align: top; +} +.dcdata td.key { + background-color: #ffffe0; +} +body { + margin: 1em 2em 1em 2em; +} +h1, h2, h3 { + font-family: sans-serif; + clear: left; +} +h1 { + padding-bottom: 4px; + margin-bottom: 0px; +} +h2 { + margin-bottom: 0.5em; +} +h3 { + margin-bottom: 0.3em; + font-size: medium; +} +.link { + border: 1px outset #88f; + background-color: #c0c0ff; + padding: 1px 4px 1px 4px; + font-size: 80%; + text-decoration: none; + font-weight: bold; + font-family: sans-serif; + color: black; +} +.link:hover { + color: red; +} +.link:active { + color: red; + border: 1px inset #88f; + background-color: #a0a0df; +} +.oaiRecord, .oaiRecordTitle { + background-color: #f0f0ff; + border-style: solid; + border-color: #d0d0d0; +} +h2.oaiRecordTitle { + background-color: #e0e0ff; + font-size: medium; + font-weight: bold; + padding: 10px; + border-width: 2px 2px 0px 2px; + margin: 0px; +} +.oaiRecord { + margin-bottom: 3em; + border-width: 2px; + padding: 10px; +} + +.results { + margin-bottom: 1.5em; +} +ul.quicklinks { + margin-top: 2px; + padding: 4px; + text-align: left; + border-bottom: 2px solid #ccc; + border-top: 2px solid #ccc; + clear: left; +} +ul.quicklinks li { + font-size: 80%; + display: inline; + list-stlye: none; + font-family: sans-serif; +} +p.intro { + font-size: 80%; +} + + + + + + + + + OAI 2.0 Request Results + + + +

OAI 2.0 Request Results

+ +

You are viewing an HTML version of the XML OAI response. To see the underlying XML use your web browsers view source option. More information about this XSLT is at the bottom of the page.

+ + +

About the XSLT

+

An XSLT file has converted the OAI-PMH 2.0 responses into XHTML which looks nice in a browser which supports XSLT such as Mozilla, Firebird and Internet Explorer. The XSLT file was created by Christopher Gutteridge at the University of Southampton as part of the GNU EPrints system, and is freely redistributable under the GPL.

If you want to use the XSL file on your own OAI interface you may but due to the way XSLT works you must install the XSL file on the same server as the OAI script, you can't just link to this copy.

For more information or to download the XSL file please see the OAI to XHTML XSLT homepage.

+ + + + + + + + + + + + + + + + +
Datestamp of response
Request URL
+ + + +

OAI Error(s)

+

The request could not be completed due to the following error or errors.

+
+ +
+ + +

Request was of type .

+
+ + + + + + +
+ + + + + + + + + + + +
Error Code
+

+ + + + + + + + + + + + + + + + + + + +
Repository Name
Base URL
Protocol Version
Earliest Datestamp
Deleted Record Policy
Granularity
+ + + + + + Admin Email + + + + + + +

Unsupported Description Type

+

The XSL currently does not support this type of description.

+
+ +
+ + + + + + +

OAI-Identifier

+ + + + + + + + + +
Scheme
Repository Identifier
Delimiter
Sample OAI Identifier
+ + + + + + +

EPrints Description

+ +

Content

+ + + +

Submission Policy

+ + +

Metadata Policy

+ +

Data Policy

+ + + + + + +

+ + +
+ + + + +

Comment

+
+ + + + + + +

Friends

+
    + +
+ + + +
  • + +Identify
    • +     + + + + + +

    Branding

    + + +     + + +

    Icon

    + + + {br:title} + + + {br:title} + + +     + + +

    Metadata Rendering Rule

    + + + + + + + +
    URL
    Namespace
    Mime Type
    +     + + + + + + +

    Gateway Information

    + + + + + + + + + + + + + + +
    Source
    Description
    URL
    Notes
    +     + + + Admin + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +

    Set

    + + + + +
    setName
    +     + + + + + + +

    This is a list of metadata formats available for the record "". Use these links to view the metadata:

    +     + +

    This is a list of metadata formats available from this archive.

    +     +     + +     + + +

    Metadata Format

    + + + + + + + +
    metadataPrefix
    metadataNamespace
    schema
    +     + + + + + + + + +

    OAI Record:

    +
    + + + +
    +     + + +

    OAI Record Header

    + + + + + + +
    OAI Identifier + + marc21 + formats +
    Datestamp
    + +

    This record has been deleted.

    +     +     + + + +

    "about" part of record container not supported by the XSL

    +     + + +   +
    + +
    +     + + + + + + + + setSpec + + Identifiers + Records + + + + + + + + +

    There are more results.

    + + + +
    resumptionToken: + +Resume
    +     + + + + +

    Unknown Metadata Format

    +
    + +
    +     + + + + +
    +

    Dublin Core Metadata (oai_dc)

    + + +
    +
    +     + + +Title + + +Author or Creator + + +Subject and Keywords + + +Description + + +Publisher + + +Other Contributor + + +Date + + +Resource Type + + +Format + + +Resource Identifier + + +Source + + +Language + + +Relation + + + + + URL + URL not shown as it is very long. + + + + + + + + + + + + + +Coverage + + +Rights Management + + + + +
    +

    Marcxml (marc21)

    + + + + + + + + + + + + + + + + + +
    LDR
    + + + + + + + $ + + + + +
    +
    +     + + + + +
    + <></> +
    +     + + + + + ="" + + + +.xmlSource { + font-size: 70%; + border: solid #c0c0a0 1px; + background-color: #ffffe0; + padding: 2em 2em 2em 0em; +} +.xmlBlock { + padding-left: 2em; +} +.xmlTagName { + color: #800000; + font-weight: bold; +} +.xmlAttrName { + font-weight: bold; +} +.xmlAttrValue { + color: #0000c0; +} + + +     diff --git a/rero_ebooks/tasks.py b/rero_ebooks/tasks.py deleted file mode 100644 index 03978f8..0000000 --- a/rero_ebooks/tasks.py +++ /dev/null @@ -1,71 +0,0 @@ -# -*- coding: utf-8 -*- -# -# This file is part of RERO Ebooks. -# Copyright (C) 2018 RERO. -# -# RERO Ebooks is free software; you can redistribute it -# and/or modify it under the terms of the GNU General Public License as -# published by the Free Software Foundation; either version 2 of the -# License, or (at your option) any later version. -# -# RERO Ebooks is distributed in the hope that it will be -# useful, but WITHOUT ANY WARRANTY; without even the implied warranty of -# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU -# General Public License for more details. -# -# You should have received a copy of the GNU General Public License -# along with RERO Ebooks; if not, write to the -# Free Software Foundation, Inc., 59 Temple Place, Suite 330, Boston, -# MA 02111-1307, USA. -# -# In applying this license, RERO does not -# waive the privileges and immunities granted to it by virtue of its status -# as an Intergovernmental Organization or submit itself to any jurisdiction. - -"""Celery tasks to create records.""" - -from __future__ import absolute_import, print_function - -from celery import shared_task -from flask import current_app - -from .api import Ebook - - -@shared_task(ignore_result=True) -def create_records(records): - """Records creation and indexing.""" - for record in records: - rec, status = Ebook.create_or_update( - record, - # TODO vendor config - vendor='cantook', - dbcommit=True, - reindex=True - ) - current_app.logger.info( - 'record uuid: {0} | {1}'.format(rec.id, status) - ) - # TODO bulk update and reindexing - current_app.logger.info( - 'records updated: {0}'.format(len(records)) - ) - return len(records) - - -@shared_task(ignore_result=True) -def delete_records(records): - """Records deletion and indexing.""" - for record in records: - status = Ebook.delete( - record, - vendor='cantook' - ) - current_app.logger.info( - 'record: {0} | DELETED {1}'.format(record, status) - ) - # TODO bulk update and reindexing - current_app.logger.info( - 'records deleted: {0}'.format(len(records)) - ) - return len(records) diff --git a/rero_ebooks/version.py b/rero_ebooks/version.py index d76b641..de3b461 100644 --- a/rero_ebooks/version.py +++ b/rero_ebooks/version.py @@ -30,4 +30,4 @@ from __future__ import absolute_import, print_function -__version__ = '0.1.0a1' +__version__ = '0.3.0' diff --git a/rero_ebooks/views.py b/rero_ebooks/views.py index 5836161..85ed929 100644 --- a/rero_ebooks/views.py +++ b/rero_ebooks/views.py @@ -27,7 +27,11 @@ from __future__ import absolute_import, print_function -from flask import Blueprint, render_template +from flask import Blueprint, make_response, render_template +from invenio_oaiserver import response as xml +from invenio_oaiserver.verbs import make_request_validator +from lxml import etree +from webargs.flaskparser import use_args from .version import __version__ @@ -43,3 +47,21 @@ def index(): """Home Page.""" return render_template('rero_ebooks/frontpage.html', version=__version__) + + +@blueprint.route('/oai2debug', methods=['GET', 'POST']) +@use_args(make_request_validator) +def response(args): + """Response endpoint.""" + e_tree = getattr(xml, args['verb'].lower())(**args) + + response = make_response(etree.tostring( + e_tree, + pretty_print=True, + xml_declaration=True, + encoding='UTF-8', + )) + response.headers['Content-Type'] = 'text/xml' + print('--->', response.data) + print('--->', args) + return response diff --git a/run-tests.sh b/run-tests.sh index 024b07a..3e25e09 100755 --- a/run-tests.sh +++ b/run-tests.sh @@ -23,10 +23,67 @@ # waive the privileges and immunities granted to it by virtue of its status # as an Intergovernmental Organization or submit itself to any jurisdiction. +# COLORS for messages +NC='\033[0m' # Default color +INFO_COLOR='\033[1;97;44m' # Bold + white + blue background +SUCCESS_COLOR='\033[1;97;42m' # Bold + white + green background +ERROR_COLOR='\033[1;97;41m' # Bold + white + red background -pipenv run pydocstyle rero_ebooks tests docs && \ -pipenv run isort -rc -c -df && \ -pipenv run check-manifest --ignore ".travis-*,docs/_build*" && \ -pipenv run sphinx-build -qnNW docs docs/_build/html && \ -pipenv run test -# python setup.py test +PROGRAM=`basename $0` + +# MESSAGES +msg() { + echo -e "${1}" 1>&2 +} +# Display a colored message +# More info: https://misc.flogisoft.com/bash/tip_colors_and_formatting +# $1: choosen color +# $2: title +# $3: the message +colored_msg() { + msg "${1}[${2}]: ${3}${NC}" +} + +info_msg() { + colored_msg "${INFO_COLOR}" "INFO" "${1}" +} + +error_msg() { + colored_msg "${ERROR_COLOR}" "ERROR" "${1}" +} + +error_msg+exit() { + error_msg "${1}" && exit 1 +} + +success_msg() { + colored_msg "${SUCCESS_COLOR}" "SUCCESS" "${1}" +} + +# Displays program name +msg "PROGRAM: ${PROGRAM}" + +# Poetry is a mandatory condition to launch this program! +if [[ -z "${VIRTUAL_ENV}" ]]; then + error_msg+exit "Error - Launch this script via poetry command:\n\tpoetry run run-tests" +fi + +set -e +safety check +info_msg "Test pydocstyle:" +pydocstyle rero_ebooks tests docs +info_msg "Test isort:" +isort -rc -c -df +info_msg "Test useless imports:" +autoflake -c -r \ + --remove-all-unused-imports \ + --ignore-init-module-imports . \ + &> /dev/null || \ + error_msg+exit "\nUse this command to check imports: \n\tautoflake --remove-all-unused-imports -r --ignore-init-module-imports .\n" +# info_msg "Check-manifest:" +# TODO: check if this is required when rero-ils will be published +# check-manifest --ignore ".travis-*,docs/_build*" +info_msg "Sphinx-build:" +sphinx-build -qnNW docs docs/_build/html +info_msg "Tests:" +poetry run tests diff --git a/scripts/worker_beat b/scripts/__init__.py old mode 100755 new mode 100644 similarity index 65% rename from scripts/worker_beat rename to scripts/__init__.py index 3899c62..4e17cc6 --- a/scripts/worker_beat +++ b/scripts/__init__.py @@ -23,6 +23,21 @@ # waive the privileges and immunities granted to it by virtue of its status # as an Intergovernmental Organization or submit itself to any jurisdiction. -set -e +"""Poetry script utils.""" -celery worker --app invenio_app --loglevel INFO -B +import os +# import subprocess +import sys + +# def __getattr__(name): # python 3.7+, otherwise define each script manually +# name = name.replace('_', '-') +# subprocess.run( +# ['python', '-u', '-m', name] + sys.argv[1:] +# ) # run whatever you like based on 'name' + + +def run(prg_name): # python 3.7+, otherwise define each script manually + def fn(): + # Replace current Python program by prg_name (same PID) + os.execvp(prg_name, [prg_name] + sys.argv[1:]) + return fn diff --git a/scripts/bootstrap b/scripts/bootstrap index 2a8fac8..3962fec 100755 --- a/scripts/bootstrap +++ b/scripts/bootstrap @@ -23,59 +23,103 @@ # waive the privileges and immunities granted to it by virtue of its status # as an Intergovernmental Organization or submit itself to any jurisdiction. -NC='\033[0m' # Default color -COLORED='\033[1;97;44m' # Bold + white + blue background +NC='\033[0m' # Default color +INFO_COLOR='\033[1;97;44m' # Bold + white + blue background +SUCCESS_COLOR='\033[1;97;42m' # Bold + white + green background +ERROR_COLOR='\033[1;97;41m' # Bold + white + red background + +PROGRAM=`basename $0` set -e +# MESSAGES msg() { - echo -e "${COLORED}${EMPHASIS}[INFO]${NC}${COLORED}: ${1}${NC}" 1>&2 + echo -e "${1}" 1>&2 +} +# Display a colored message +# More info: https://misc.flogisoft.com/bash/tip_colors_and_formatting +# $1: choosen color +# $2: title +# $3: the message +colored_msg() { + msg "${1}[${2}]: ${3}${NC}" +} + +info_msg() { + colored_msg "${INFO_COLOR}" "INFO" "${1}" +} + +error_msg() { + colored_msg "${ERROR_COLOR}" "ERROR" "${1}" } -# The real bootstrap script starts 20 lines below ;-) +error_msg+exit() { + error_msg "${1}" && exit 1 +} + +success_msg() { + colored_msg "${SUCCESS_COLOR}" "SUCCESS" "${1}" +} + +# Displays program name +msg "PROGRAM: ${PROGRAM}" + +# options may be followed by one colon to indicate they have a required argument +if ! options=$(getopt -o dc -l deploy,ci -- "$@") +then + # something went wrong, getopt will put out an error message for us + exit 1 +fi + +# The real bootstrap script starts with app installation below ;-) flags=() deploy=false -cmd="pipenv sync" +cmd="poetry install" ci=false -while test $# -gt 0; do - case "$1" in - --deploy) - # We are probably inside travis, check for env variables - deploy=true - shift - ;; - --ci) - # We are probably inside travis, check for env variables - ci=true - shift - ;; - *) - # Use the flags that are passed to the script directly to install - flags+=("$1") - shift - ;; - esac +while test $# -gt 0 +do + case "$1" in + -d|--deploy) + # We are probably inside travis, check for env variables + deploy=true ;; + -c|--ci) + # We are probably inside travis, check for env variables + ci=true ;; + (--) shift; break;; + (-*) flags+=("$1") ;; + (*) break;; + esac + shift done -if ! $deploy || $ci ; then - flags=("--dev") + +# Poetry is a mandatory condition to launch this program! +if [[ -z "${VIRTUAL_ENV}" ]]; then + error_msg+exit "Error - Launch this script via poetry command:\n\tpoetry run ${PROGRAM}" fi if ! $deploy ; then if $ci ; then - cmd="pipenv install --skip-lock --sequential" + cmd="poetry update" fi fi -# go generate a clean lock file -# pipenv --rm; pipenv install --sequential - # install the application and all the dependencies -msg "Install with command: ${cmd} ${flags[@]}" +info_msg "Install with command: ${cmd} ${flags[@]}" ${cmd} ${flags[@]} +# install the app itself +if ! $deploy ; then + if $ci ; then + poetry install + fi +fi + # build the web assets msg "Build web assets: collect" -pipenv run invenio collect -v +invenio collect -v msg "Build webpack" -pipenv run invenio webpack buildall +invenio webpack buildall + +success_msg "${PROGRAM} finished!" +exit 0 diff --git a/scripts/console b/scripts/console index f3b7810..fdb661f 100755 --- a/scripts/console +++ b/scripts/console @@ -23,6 +23,53 @@ # waive the privileges and immunities granted to it by virtue of its status # as an Intergovernmental Organization or submit itself to any jurisdiction. +NC='\033[0m' # Default color +INFO_COLOR='\033[1;97;44m' # Bold + white + blue background +SUCCESS_COLOR='\033[1;97;42m' # Bold + white + green background +ERROR_COLOR='\033[1;97;41m' # Bold + white + red background + +PROGRAM=`basename $0` + set -e -pipenv run invenio shell +# MESSAGES +msg() { + echo -e "${1}" 1>&2 +} +# Display a colored message +# More info: https://misc.flogisoft.com/bash/tip_colors_and_formatting +# $1: choosen color +# $2: title +# $3: the message +colored_msg() { + msg "${1}[${2}]: ${3}${NC}" +} + +info_msg() { + colored_msg "${INFO_COLOR}" "INFO" "${1}" +} + +error_msg() { + colored_msg "${ERROR_COLOR}" "ERROR" "${1}" +} + +error_msg+exit() { + error_msg "${1}" && exit 1 +} + +success_msg() { + colored_msg "${SUCCESS_COLOR}" "SUCCESS" "${1}" +} + +# Displays program name +PROGRAM=`basename $0` +msg "PROGRAM: ${PROGRAM}" + +set -e + +# poetry is a mandatory condition to launch this program! +if [[ -z "${VIRTUAL_ENV}" ]]; then + error_msg+exit "Error - Launch this script via poetry command:\n\tpoetry run ${PROGRAM}" +fi + +invenio shell diff --git a/scripts/server b/scripts/server index 0397e24..1103e78 100755 --- a/scripts/server +++ b/scripts/server @@ -23,19 +23,92 @@ # waive the privileges and immunities granted to it by virtue of its status # as an Intergovernmental Organization or submit itself to any jurisdiction. +NC='\033[0m' # Default color +INFO_COLOR='\033[1;97;44m' # Bold + white + blue background +SUCCESS_COLOR='\033[1;97;42m' # Bold + white + green background +ERROR_COLOR='\033[1;97;41m' # Bold + white + red background + +PROGRAM=`basename $0` + +set -e + +# MESSAGES +msg() { + echo -e "${1}" 1>&2 +} +# Display a colored message +# More info: https://misc.flogisoft.com/bash/tip_colors_and_formatting +# $1: choosen color +# $2: title +# $3: the message +colored_msg() { + msg "${1}[${2}]: ${3}${NC}" +} + +info_msg() { + colored_msg "${INFO_COLOR}" "INFO" "${1}" +} + +error_msg() { + colored_msg "${ERROR_COLOR}" "ERROR" "${1}" +} + +error_msg+exit() { + error_msg "${1}" && exit 1 +} + +success_msg() { + colored_msg "${SUCCESS_COLOR}" "SUCCESS" "${1}" +} + +# Displays program name +PROGRAM=`basename $0` +msg "PROGRAM: ${PROGRAM}" + +PORT=5000 +HTTP=false + +if ! options=$(getopt -o np: -l non_secure,port: -- "$@") +then + # something went wrong, getopt will put out an error message for us + exit 1 +fi + +while [ $# -gt 0 ] +do + case $1 in + -n|--non_secure) HTTP=true;; + -p|--port) PORT=$2; shift;; + (--) shift; break;; + (-*) error_msg+exit "$0: Unrecognized option $1";; + esac + shift +done + set -e script_path=$(dirname "$0") +# poetry is a mandatory condition to launch this program! +if [[ -z "${VIRTUAL_ENV}" ]]; then + error_msg+exit "Error - Launch this script via poetry command:\n\tpoetry run ${PROGRAM}" +fi export FLASK_DEBUG=True -FLASK_ENV=development - +export FLASK_ENV=development # Start Worker and Server -pipenv run celery worker -A invenio_app.celery --beat -l INFO & pid_celery=$! +celery worker -A rero_ebooks.celery --beat -l INFO & pid_celery=$! -pipenv run invenio run \ - --cert "$script_path"/../docker/nginx/test.crt \ - --key "$script_path"/../docker/nginx/test.key & pid_server=$! +if ${HTTP} +then + info_msg "Server is running on http://localhost:${PORT}" + invenio run -p $PORT & pid_server=$! +else + info_msg "Server is running on https://localhost:${PORT}" + invenio run \ + --cert "$script_path"/../docker/nginx/test.crt \ + --key "$script_path"/../docker/nginx/test.key \ + -p $PORT & pid_server=$! +fi trap 'kill $pid_celery $pid_server &>/dev/null' EXIT diff --git a/scripts/setup b/scripts/setup index ccc4ce4..d684f13 100755 --- a/scripts/setup +++ b/scripts/setup @@ -24,27 +24,89 @@ # as an Intergovernmental Organization or submit itself to any jurisdiction. +# COLORS for messages +NC='\033[0m' # Default color +INFO_COLOR='\033[1;97;44m' # Bold + white + blue background +SUCCESS_COLOR='\033[1;97;42m' # Bold + white + green background +ERROR_COLOR='\033[1;97;41m' # Bold + white + red background + +PROGRAM=`basename $0` + +# MESSAGES +msg() { + echo -e "${1}" 1>&2 +} +# Display a colored message +# More info: https://misc.flogisoft.com/bash/tip_colors_and_formatting +# $1: choosen color +# $2: title +# $3: the message +colored_msg() { + msg "${1}[${2}]: ${3}${NC}" +} + +info_msg() { + colored_msg "${INFO_COLOR}" "INFO" "${1}" +} + +error_msg() { + colored_msg "${ERROR_COLOR}" "ERROR" "${1}" +} + +error_msg+exit() { + error_msg "${1}" && exit 1 +} + +success_msg() { + colored_msg "${SUCCESS_COLOR}" "SUCCESS" "${1}" +} + +invert_warning_option() { + if ${ENABLE_WARNINGS} + then + ENABLE_WARNINGS=false + else + ENABLE_WARNINGS=true + fi +} + +# Displays program name +PROGRAM=`basename $0` +msg "PROGRAM: ${PROGRAM}" + +# POETRY is a mandatory condition to launch this program! +if [[ -z "${VIRTUAL_ENV}" ]]; then + error_msg+exit "Error - Launch this script via poetry command:\n\tpoetry run ${PROGRAM}" +fi + +# Purge celery +info_msg "Purge celery" +celery purge -A rero_ebooks.celery -f # Clean redis -pipenv run invenio shell --no-term-title -c "import redis; redis.StrictRedis.from_url(app.config['CACHE_REDIS_URL']).flushall(); print('Cache cleared')" -pipenv run invenio db destroy --yes-i-know -pipenv run invenio db init create -pipenv run invenio index queue purge delete +info_msg "Clean redis" +invenio shell --no-term-title -c "import redis; redis.StrictRedis.from_url(app.config['CACHE_REDIS_URL']).flushall(); print('Cache cleared')" + +invenio db destroy --yes-i-know +invenio db init create +invenio index queue purge delete set -e -pipenv run invenio index destroy --force --yes-i-know -pipenv run invenio index init --force -pipenv run invenio index queue init +invenio index destroy --force --yes-i-know +invenio index init --force +invenio index queue init # init apiharvester config from file -pipenv run invenio apiharvester sources data/apisources.yml +invenio apiharvester sources data/apisources.yml if [ "$1" = "--deployment" ] then # load source VS - pipenv run invenio apiharvester harvest -n VS -k + invenio apiharvester harvest -n VS -k -v # load source NJ - pipenv run invenio apiharvester harvest -n NJ -k + invenio apiharvester harvest -n NJ -k -v else # load source VS - pipenv run invenio apiharvester harvest -n VS -v -m 100 + invenio apiharvester harvest -n VS -v -m 100 # load source NJ - pipenv run invenio apiharvester harvest -n NJ -v -m 100 + invenio apiharvester harvest -n NJ -v -m 100 fi + +invenio apiharvester initsets data/oaisets.yml -v diff --git a/scripts/update b/scripts/update index 1f33dd5..359c4cd 100755 --- a/scripts/update +++ b/scripts/update @@ -23,10 +23,56 @@ # waive the privileges and immunities granted to it by virtue of its status # as an Intergovernmental Organization or submit itself to any jurisdiction. +NC='\033[0m' # Default color +INFO_COLOR='\033[1;97;44m' # Bold + white + blue background +SUCCESS_COLOR='\033[1;97;42m' # Bold + white + green background +ERROR_COLOR='\033[1;97;41m' # Bold + white + red background + +PROGRAM=`basename $0` + set -e +# MESSAGES +msg() { + echo -e "${1}" 1>&2 +} +# Display a colored message +# More info: https://misc.flogisoft.com/bash/tip_colors_and_formatting +# $1: choosen color +# $2: title +# $3: the message +colored_msg() { + msg "${1}[${2}]: ${3}${NC}" +} + +info_msg() { + colored_msg "${INFO_COLOR}" "INFO" "${1}" +} + +error_msg() { + colored_msg "${ERROR_COLOR}" "ERROR" "${1}" +} + +error_msg+exit() { + error_msg "${1}" && exit 1 +} + +success_msg() { + colored_msg "${SUCCESS_COLOR}" "SUCCESS" "${1}" +} + +# Displays program name +msg "PROGRAM: ${PROGRAM}" + +set -e + +# poetry is a mandatory condition to launch this program! +if [[ -z "${VIRTUAL_ENV}" ]]; then + error_msg+exit "Error - Launch this script via poetry command:\n\tpoetry run ${PROGRAM}" +fi + script_path=$(dirname "$0") ./"$script_path"/bootstrap -pipenv run invenio alembic upgrade -pipenv run invenio index init --force +invenio alembic upgrade +invenio index init --force diff --git a/setup.py b/setup.py index 68f0f75..551d974 100644 --- a/setup.py +++ b/setup.py @@ -47,7 +47,7 @@ def run(self): readme = open('README.rst').read() -INVENIO_VERSION = "3.1.0" +INVENIO_VERSION = "3.2.1" packages = find_packages() @@ -132,7 +132,8 @@ def run(self): 'apiharvester = rero_ebooks.apiharvester.models' ], 'invenio_celery.tasks': [ - 'rero_ebooks = rero_ebooks.tasks' + 'rero_ebooks = rero_ebooks.tasks', + 'apiharvester = rero_ebooks.apiharvester.tasks' ] }, diff --git a/tests/api/conftest.py b/tests/api/conftest.py index eec2e45..f9aeb92 100644 --- a/tests/api/conftest.py +++ b/tests/api/conftest.py @@ -35,6 +35,7 @@ def cdf_record(): yield { '__order__': [ 'other_standard_identifier', + 'electronic_location_and_access', 'electronic_location_and_access' ], 'other_standard_identifier': [ @@ -49,19 +50,23 @@ def cdf_record(): ], 'electronic_location_and_access': [ { - '__order__': [ - 'uniform_resource_identifier', - 'access_method', - 'relationship', - ], - 'relationship': 'Resource', 'access_method': 'HTTP', - 'uniform_resource_identifier': [ + 'materials_specified': 'Image de couverture', + 'relationship': 'Related resource', + 'uniform_resource_identifier': + 'http://images.immateriel.fr/covers/X8WRJB3.png'}, + { + 'access_method': 'HTTP', + 'electronic_format_type': 'epub', + 'materials_specified': 'Texte intégral', + 'nonpublic_note': 'mv-cantook', + 'relationship': 'Resource', + 'uniform_resource_identifier': ( 'http://la-chaux-de-fonds.ebibliomedia.ch/resources/' '5788be89dde6b2d458f42b35' - ], + ) } - ], + ] } @@ -72,6 +77,7 @@ def dojson_like_cdf_record(): '__order__': ( 'other_standard_identifier', 'electronic_location_and_access', + 'electronic_location_and_access' ), 'other_standard_identifier': [ { @@ -85,19 +91,24 @@ def dojson_like_cdf_record(): ], 'electronic_location_and_access': [ { - '__order__': ( - 'uniform_resource_identifier', - 'access_method', - 'relationship', - ), - 'relationship': 'Resource', 'access_method': 'HTTP', + 'materials_specified': 'Image de couverture', + 'relationship': 'Related resource', + 'uniform_resource_identifier': + 'http://images.immateriel.fr/covers/X8WRJB3.png' + }, + { + 'access_method': 'HTTP', + 'electronic_format_type': 'epub', + 'materials_specified': 'Texte intégral', + 'nonpublic_note': 'mv-cantook', + 'relationship': 'Resource', 'uniform_resource_identifier': ( 'http://la-chaux-de-fonds.ebibliomedia.ch/resources/' - '5788be89dde6b2d458f42b35', - ), + '5788be89dde6b2d458f42b35' + ) } - ], + ] } @@ -121,17 +132,15 @@ def mv_record(): ], 'electronic_location_and_access': [ { - '__order__': [ - 'uniform_resource_identifier', - 'access_method', - 'relationship', - ], - 'relationship': 'Resource', 'access_method': 'HTTP', - 'uniform_resource_identifier': [ + 'electronic_format_type': 'epub', + 'materials_specified': 'Texte intégral', + 'nonpublic_note': 'mv-cantook', + 'relationship': 'Resource', + 'uniform_resource_identifier': ( 'http://mediatheque-valais.ebibliomedia.ch/resources/' '5788be89dde6b2d458f42b35' - ], + ) } ], } diff --git a/tests/api/test_api.py b/tests/api/test_api.py index f0bce6c..02d6e00 100644 --- a/tests/api/test_api.py +++ b/tests/api/test_api.py @@ -24,41 +24,72 @@ """Test Ebook api.""" +from copy import deepcopy + from rero_ebooks.api import Ebook from rero_ebooks.minters import build_ebook_pid -def test_merge_records(db, cdf_record, mv_record): +def test_merge_and_remove_uri_records(es, db, cdf_record, mv_record): """Test merge ebook records.""" + cover = "http://images.immateriel.fr/covers/X8WRJB3.png" + cdf = 'http://la-chaux-de-fonds.ebibliomedia.ch/resources/'\ '5788be89dde6b2d458f42b35' mv = 'http://mediatheque-valais.ebibliomedia.ch/resources/'\ '5788be89dde6b2d458f42b35' + orig_mv_record = deepcopy(mv_record) + orig_cdf_record = deepcopy(cdf_record) + cdf_record_pid = build_ebook_pid(cdf_record, 'cantook') cdf_record_exists = Ebook.get_record_by_pid(cdf_record_pid) assert cdf_record_exists is None new_cdf_record, cdf_status = Ebook.create_or_update( cdf_record, vendor='cantook', dbcommit=True, reindex=True ) - assert cdf_status == 'created' + assert cdf_status == 'CREATE' assert new_cdf_record['electronic_location_and_access'][0][ 'uniform_resource_identifier' ] merged_record, merged_record_status = Ebook.create_or_update( mv_record, vendor='cantook', dbcommit=True, reindex=True ) - assert merged_record_status == 'updated' + assert merged_record_status == 'UPDATE' ela = merged_record['electronic_location_and_access'] + assert len(ela) == 3 + assert mv == ela[0]['uniform_resource_identifier'] + assert cover == ela[1]['uniform_resource_identifier'] + assert cdf == ela[2]['uniform_resource_identifier'] + + removed_uri_record, removed_uri_record_status = Ebook.remove_uri( + orig_mv_record, + vendor='cantook', + url='http://mediatheque-valais.ebibliomedia.ch', + dbcommit=True, + reindex=True + ) + ela = removed_uri_record['electronic_location_and_access'] assert len(ela) == 2 - first_uri = ela[0]['uniform_resource_identifier'][0] - second_uri = ela[1]['uniform_resource_identifier'][0] - assert mv == first_uri - assert cdf == second_uri + assert removed_uri_record_status == 'REMOVE URIs: 1' + assert cover == ela[0]['uniform_resource_identifier'] + assert cdf == ela[1]['uniform_resource_identifier'] + + removed_uri_record, removed_uri_record_status = Ebook.remove_uri( + orig_cdf_record, + vendor='cantook', + url='http://la-chaux-de-fonds.ebibliomedia.ch', + dbcommit=True, + reindex=True + ) + ela = removed_uri_record['electronic_location_and_access'] + assert len(ela) == 1 + assert removed_uri_record_status == 'REMOVE URIs: 1' + assert cover == ela[0]['uniform_resource_identifier'] -def test_merge_records_same(db, cdf_record, dojson_like_cdf_record): +def test_merge_records_same(es, db, cdf_record, dojson_like_cdf_record): """Test merge ebook records.""" cdf_record_pid = build_ebook_pid(cdf_record, 'cantook') new_cdf_record, cdf_status = Ebook.create_or_update( @@ -67,9 +98,9 @@ def test_merge_records_same(db, cdf_record, dojson_like_cdf_record): merged_record, merged_record_status = Ebook.create_or_update( dojson_like_cdf_record, vendor='cantook', dbcommit=True, reindex=True ) - assert merged_record_status == 'updated' + assert merged_record_status == 'UPDATE' ela = merged_record['electronic_location_and_access'] - assert len(ela) == 1 + assert len(ela) == 2 def test_create_or_update_record(db, cdf_record): @@ -79,11 +110,11 @@ def test_create_or_update_record(db, cdf_record): new_record, status = Ebook.create_or_update( cdf_record, vendor='cantook', dbcommit=True, reindex=True ) - assert status == 'created' + assert status == 'CREATE' record = Ebook.get_record_by_pid('cantook-5788be89dde6b2d458f42b35') assert record['pid'] == 'cantook-5788be89dde6b2d458f42b35' record['title'] = 'The Nest' mod_record, status = Ebook.create_or_update( record, vendor='cantook', dbcommit=True, reindex=True ) - assert status == 'updated' + assert status == 'UPDATE' diff --git a/tests/conftest.py b/tests/conftest.py index 14bb567..430d58f 100644 --- a/tests/conftest.py +++ b/tests/conftest.py @@ -33,6 +33,39 @@ from rero_ebooks.apiharvester.utils import api_source +@pytest.fixture(scope='module') +def es(appctx): + """Setup and teardown all registered Elasticsearch indices. + + Scope: module + This fixture will create all registered indexes in Elasticsearch and remove + once done. Fixtures that perform changes (e.g. index or remove documents), + should used the function-scoped :py:data:`es_clear` fixture to leave the + indexes clean for the following tests. + """ + from invenio_search.errors import IndexAlreadyExistsError + from invenio_search import current_search, current_search_client + + try: + list(current_search.put_templates()) + except IndexAlreadyExistsError: + current_search_client.indices.delete_template('*') + list(current_search.put_templates()) + + try: + list(current_search.create()) + except IndexAlreadyExistsError: + list(current_search.delete(ignore=[404])) + list(current_search.create()) + current_search_client.indices.refresh() + + try: + yield current_search_client + finally: + current_search_client.indices.delete(index='*') + current_search_client.indices.delete_template('*') + + @pytest.fixture(scope="module") def data(): """Init data.""" diff --git a/tests/unit/test_apiharvester_cli.py b/tests/unit/test_apiharvester_cli.py index ccf8fc9..f24f6f4 100644 --- a/tests/unit/test_apiharvester_cli.py +++ b/tests/unit/test_apiharvester_cli.py @@ -29,7 +29,6 @@ import os import re -import pytest import responses from click.testing import CliRunner from flask.cli import ScriptInfo @@ -80,9 +79,9 @@ def test_config(app, apiharvester_config_vs): assert res.output == 'Add ApiHarvestConfig: NJ\n' -@pytest.mark.skip( - reason="Have to wait for response to implement re.compile for add_passthru" -) +# @pytest.mark.skip( +# reason="Have to wait for response to implement re.compile foadd_passthru" +# ) @responses.activate def test_harvest(app, apiharvester_config_vs, apiharvester_apiresponse_vs): """Test harvest cli.""" @@ -93,9 +92,10 @@ def test_harvest(app, apiharvester_config_vs, apiharvester_apiresponse_vs): responses.add_passthru( re.compile('http://localhost:9200/(.*)') ) - url1 = '{url}{static}'.format( + url = '{url}{static}'.format( url=apiharvester_config_vs.get('url'), - static='/v1/resources.json?start_at=1900-01-01T00:00:00&page=1', + static=('/v1/resources.json?start_at=1900-01-01T00:00:00' + '&page={page}{available}') ) headers1 = { 'X-Total-Pages': '1', @@ -105,26 +105,27 @@ def test_harvest(app, apiharvester_config_vs, apiharvester_apiresponse_vs): } responses.add( responses.GET, - url1, + url=url.format(page=1, available='&available=1'), status=200, json=apiharvester_apiresponse_vs, headers=headers1 ) - url2 = '{url}{static}'.format( - url=apiharvester_config_vs.get('url'), - static='/v1/resources.json?start_at=1900-01-01T00:00:00&page=2' + responses.add( + responses.GET, + url=url.format(page=2, available='&available=1'), + status=400, ) - headers2 = { - 'X-Total-Pages': '1', - 'X-Total-Items': '1', - 'X-Per-Page': '20', - 'X-Current-Page': '2' - } responses.add( responses.GET, - url2, + url=url.format(page=1, available=''), status=200, - headers=headers2 + json=apiharvester_apiresponse_vs, + headers=headers1 + ) + responses.add( + responses.GET, + url=url.format(page=2, available=''), + status=400, ) res = runner.invoke( @@ -134,13 +135,15 @@ def test_harvest(app, apiharvester_config_vs, apiharvester_apiresponse_vs): ], obj=script_info ) + assert 0 == res.exit_code - output = '{line1}\n{line2}\n{line3}\n{line4}\n'.format( - line1='Harvest api: VS', - line2=('API page: 1 url: {url}').format(url=url1), - line3='1: {link}'.format( - link=apiharvester_apiresponse_vs['resources'][0]['link'] - ), - line4='API harvest 1 items | got 1 from VS' - ) - assert res.output == output + assert res.output.strip().split('\n') == [ + 'Harvest api: VS', + ('API page: 1 url: http://mediatheque-valais.cantookstation.eu/v1/' + 'resources.json?start_at=1900-01-01T00:00:00&page=1&available=1'), + ('API page: 1 url: http://mediatheque-valais.cantookstation.eu/v1/' + 'resources.json?start_at=1900-01-01T00:00:00&page=1'), + '1: cantook:mv-cantook cantook-immateriel.frO692039 = CREATE', + ('API harvest items=1 available=1 |' + ' got=1 new=1 updated=0 deleted=0 from VS.') + ]