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Private mutation from nextclade #226

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MarieLataretu opened this issue Apr 5, 2022 · 1 comment · Fixed by #224
Open

Private mutation from nextclade #226

MarieLataretu opened this issue Apr 5, 2022 · 1 comment · Fixed by #224
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enhancement New feature or request

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@MarieLataretu
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Private mutation from the nextclade output can help to detect recombinants, mixed infections or contamination, see Twitter

We could add the following columns to the datatable:
"privateNucMutations.reversionSubstitutions", "privateNucMutations.labeledSubstitutions", "privateNucMutations.unlabeledSubstitutions", "qc.privateMutations.status"

And maybe add also the qc.privateMutations.status in the html?

@MarieLataretu MarieLataretu added the enhancement New feature or request label Apr 5, 2022
@MarieLataretu
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I actually have an other datatable extension request:
Nextclade_pango from nextclade output (available from version 1.11)

If the clade is labeled as recombinant, one can looke this up easily

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