diff --git a/poetry.lock b/poetry.lock
index 23c2e14..6018f51 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -371,18 +371,18 @@ lxml = ["lxml"]
 
 [[package]]
 name = "bioregistry"
-version = "0.8.20"
+version = "0.10.57"
 description = "Integrated registry of biological databases and nomenclatures"
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
 files = [
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-    {file = "bioregistry-0.8.20.tar.gz", hash = "sha256:26651af7d4525c9508758c0760660997df5c78edec553860845fe38df6255040"},
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 ]
 
 [package.dependencies]
 click = "*"
-curies = ">=0.5.1"
+curies = ">=0.6.0"
 more-click = ">=0.1.2"
 pydantic = "*"
 pystow = ">=0.1.13"
@@ -392,12 +392,12 @@ tqdm = "*"
 [package.extras]
 align = ["beautifulsoup4", "class-resolver", "defusedxml", "fairsharing-client (>=0.1.0)", "pyyaml", "tabulate"]
 charts = ["jinja2", "matplotlib", "matplotlib-venn", "pandas", "seaborn"]
-docs = ["autodoc-pydantic", "sphinx", "sphinx-autodoc-typehints (==1.21.1)", "sphinx-automodapi", "sphinx-click", "sphinx-rtd-theme"]
+docs = ["autodoc-pydantic", "sphinx", "sphinx-automodapi", "sphinx-click", "sphinx-rtd-theme"]
 export = ["ndex2", "pyyaml", "rdflib", "rdflib-jsonld"]
 gha = ["more-itertools"]
 health = ["click-default-group", "jinja2", "pandas", "pyyaml", "tabulate"]
-tests = ["coverage", "more-itertools", "pytest"]
-web = ["bootstrap-flask (<=2.0.0)", "fastapi", "flasgger", "flask (<2.2.4)", "markdown", "pyyaml", "rdflib", "rdflib-endpoint", "rdflib-jsonld", "uvicorn", "werkzeug (<2.3.0)"]
+tests = ["coverage", "httpx", "more-itertools", "pytest"]
+web = ["bootstrap-flask (<=2.0.0)", "curies[fastapi]", "fastapi", "flask (<2.2.4)", "markdown", "pyyaml", "rdflib", "rdflib-endpoint", "rdflib-jsonld", "uvicorn", "werkzeug (<2.3.0)"]
 
 [[package]]
 name = "black"
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@@ -4879,6 +4899,9 @@ files = [
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@@ -4888,6 +4911,9 @@ files = [
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@@ -4897,6 +4923,9 @@ files = [
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@@ -4933,6 +4962,11 @@ files = [
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+    {file = "scikit_learn-1.3.1-cp312-cp312-macosx_12_0_arm64.whl", hash = "sha256:9147a3a4df4d401e618713880be023e36109c85d8569b3bf5377e6cd3fecdeac"},
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@@ -5217,6 +5251,14 @@ files = [
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+    {file = "SQLAlchemy-2.0.21-cp312-cp312-macosx_10_9_x86_64.whl", hash = "sha256:56628ca27aa17b5890391ded4e385bf0480209726f198799b7e980c6bd473bd7"},
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+    {file = "SQLAlchemy-2.0.21-cp312-cp312-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:e7421c1bfdbb7214313919472307be650bd45c4dc2fcb317d64d078993de045b"},
+    {file = "SQLAlchemy-2.0.21-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:632784f7a6f12cfa0e84bf2a5003b07660addccf5563c132cd23b7cc1d7371a9"},
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+    {file = "SQLAlchemy-2.0.21-cp312-cp312-win_amd64.whl", hash = "sha256:526b869a0f4f000d8d8ee3409d0becca30ae73f494cbb48801da0129601f72c6"},
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@@ -6169,4 +6211,4 @@ testing = ["big-O", "jaraco.functools", "jaraco.itertools", "more-itertools", "p
 [metadata]
 lock-version = "2.0"
 python-versions = "^3.10"
-content-hash = "75b7d9478ed4b36357e175e046c51a57352a3bbfdf3d1b302544a72f59a88a77"
+content-hash = "4fc2e53a6cdee52c917d0da2cf8d9cd9ef23f0076718eeca8fcf07e9f6c33c0b"
diff --git a/pyproject.toml b/pyproject.toml
index 0d7e225..d1d4e3b 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -17,17 +17,17 @@ nxontology_ml = "nxontology_ml.commands:cli"
 
 # https://python-poetry.org/docs/versions/
 [tool.poetry.dependencies]
-bioregistry = "^0.8.3"
-fire = "^0.5.0"
-ipykernel = "^6.24.0"
-jupyter = "^1.0.0"
-nbconvert = "^6.2.0"
-notebook = "^6.4.4"
+bioregistry = "^0.10"
+fire = "^0.5"
+ipykernel = "^6.24"
+jupyter = "^1.0"
+nbconvert = "^6.2"
+notebook = "^6.4"
 numpy = "^1.25.1"
 # nxontology = "^0.5.0"
 nxontology = { git = "https://github.com/related-sciences/nxontology.git", rev = "b68411dd7427e303c5f5e389a90185976127c78b" }
-oaklib = "^0.5.12"
-pandas = "^2.0.3"
+oaklib = "^0.5"
+pandas = "^2.0"
 python = "^3.10"
 pytest-cov = "^4.1.0"
 openai = "^0.27.8"
@@ -50,7 +50,7 @@ url = "https://download.pytorch.org/whl/cpu"
 priority = "explicit"
 
 [tool.poetry.group.dev.dependencies]
-pre-commit = "^3.3.3"
+pre-commit = "^3.3"
 black = { extras = ["jupyter"], version = "^23.7.0" }
 pytest = "^7.4.0"
 ruff = "^0.0.286"