run through

ratt-ru · Jun 7, 2024 · 8484766 · 8484766
1 parent 8c41bcf
commit 8484766
Showing 1 changed file with 13 additions and 14 deletions.
diff --git a/.github/workflows/test_installation.yml b/.github/workflows/test_installation.yml
@@ -32,46 +32,45 @@ jobs:
     - name: Install package
       run: |
           poetry install --with tests --no-interaction
-          poetry shell
     - name: Lint with flake8
       run: |
         # stop the build if there are Python syntax errors or undefined names
-        flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
+        poetry run flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
         # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
-        flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
+        poetry run flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
     - name: Test conversion to .txt models
       run: |
-        tigger-convert $GITHUB_WORKSPACE/test/3C147-HI6.refmodel.lsm.html /tmp/output.txt -f \
+        poetry run tigger-convert $GITHUB_WORKSPACE/test/3C147-HI6.refmodel.lsm.html /tmp/output.txt -f \
           --output-format "name ra_d dec_d i q u v i q u v spi rm emaj_s emin_s pa_d freq0"
-        tigger-convert $GITHUB_WORKSPACE/test/3C147-HI6.refmodel.lsm.html /tmp/output.recentred.txt -f --center 85.5deg,49.9deg --rename \
+        poetry run tigger-convert $GITHUB_WORKSPACE/test/3C147-HI6.refmodel.lsm.html /tmp/output.recentred.txt -f --center 85.5deg,49.9deg --rename \
           --output-format "name ra_d dec_d i q u v i q u v spi rm emaj_s emin_s pa_d freq0"
         echo "Checking reference LSM"
         diff $GITHUB_WORKSPACE/test/3C147-HI6.refmodel.reference.txt /tmp/output.txt
         echo "Checking recentred reference LSM"
         diff $GITHUB_WORKSPACE/test/3C147-HI6.refmodel.recentred.reference.txt /tmp/output.recentred.txt
     - name: Test reverse conversion to .lsm.html models
       run: |
-        tigger-convert /tmp/output.txt /tmp/output.lsm.html -f
+        poetry run tigger-convert /tmp/output.txt /tmp/output.lsm.html -f
     - name: Test .gaul conversions
       run: |
-        tigger-convert $GITHUB_WORKSPACE/test/deep4.gaul /tmp/deep4.lsm.html -f 
-        tigger-convert $GITHUB_WORKSPACE/test/deep4.gaul /tmp/deep4.txt -f --output-format "name ra_d dec_d i q u v spi rm emaj_s emin_s pa_d freq0"
+        poetry run tigger-convert $GITHUB_WORKSPACE/test/deep4.gaul /tmp/deep4.lsm.html -f 
+        poetry run tigger-convert $GITHUB_WORKSPACE/test/deep4.gaul /tmp/deep4.txt -f --output-format "name ra_d dec_d i q u v spi rm emaj_s emin_s pa_d freq0"
         diff $GITHUB_WORKSPACE/test/deep4.reference.txt /tmp/deep4.txt
     - name: Test .AIPSCC conversions
       run: |
         gunzip <$GITHUB_WORKSPACE/test/3C147-L-A-CLEAN.fits.gz >/tmp/3C147-L-A-CLEAN.fits
-        tigger-convert /tmp/3C147-L-A-CLEAN.fits /tmp/3C147-L-A-CLEAN.fits.lsm.html -f
-        tigger-convert /tmp/3C147-L-A-CLEAN.fits.lsm.html /tmp/3C147-L-A-CLEAN.txt -f --output-format "name ra_d dec_d i q u v"
+        poetry run tigger-convert /tmp/3C147-L-A-CLEAN.fits /tmp/3C147-L-A-CLEAN.fits.lsm.html -f
+        poetry run tigger-convert /tmp/3C147-L-A-CLEAN.fits.lsm.html /tmp/3C147-L-A-CLEAN.txt -f --output-format "name ra_d dec_d i q u v"
         zdiff $GITHUB_WORKSPACE/test/3C147-L-A-CLEAN.txt.gz /tmp/3C147-L-A-CLEAN.txt
     - name: Testing tigger-restore and tigger-make-brick
       run: |
         cp $GITHUB_WORKSPACE/test/3C147tmp.fits /tmp
-        tigger-make-brick $GITHUB_WORKSPACE/test/3C147-HI6.refmodel.lsm.html /tmp/3C147tmp.fits 
-        tigger-restore -f $GITHUB_WORKSPACE/test/3C147tmp.fits $GITHUB_WORKSPACE/test/3C147-HI6.refmodel.lsm.html /tmp/restored.fits
+        poetry run tigger-make-brick $GITHUB_WORKSPACE/test/3C147-HI6.refmodel.lsm.html /tmp/3C147tmp.fits 
+        poetry run tigger-restore -f $GITHUB_WORKSPACE/test/3C147tmp.fits $GITHUB_WORKSPACE/test/3C147-HI6.refmodel.lsm.html /tmp/restored.fits
     - name: Test tigger-tag
       run: |
-        tigger-tag $GITHUB_WORKSPACE/test/3C147-HI6.refmodel.lsm.html 'r<0.5d' inner=1 -o /tmp/tmp.lsm.html -f
+        poetry run tigger-tag $GITHUB_WORKSPACE/test/3C147-HI6.refmodel.lsm.html 'r<0.5d' inner=1 -o /tmp/tmp.lsm.html -f
     - name: Test .lsm to ds9 region file conversion
       run: |
         echo "Checking lsm.html to .reg conversion"
-        tigger-convert $GITHUB_WORKSPACE/test/3C147-HI6.refmodel.lsm.html /tmp/3C147-HI6.refmodel.lsm.reg -f 
+        poetry run tigger-convert $GITHUB_WORKSPACE/test/3C147-HI6.refmodel.lsm.html /tmp/3C147-HI6.refmodel.lsm.reg -f