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Data for benchmark: A_thaliana_200G CPU: 6 core, 12 threads, 2.2 GHz Using cProfile for profiling
A_thaliana_200G
31626 function calls (31095 primitive calls) in 702.393 seconds Ordered by: standard name ncalls tottime percall cumtime percall filename:lineno(function) 82/59 0.000 0.000 0.015 0.000 <frozen importlib._bootstrap>:1009(_handle_fromlist) 73 0.000 0.000 0.000 0.000 <frozen importlib._bootstrap>:103(release) 64 0.000 0.000 0.000 0.000 <frozen importlib._bootstrap>:143(__init__) 64 0.000 0.000 0.001 0.000 <frozen importlib._bootstrap>:147(__enter__) 64 0.000 0.000 0.000 0.000 <frozen importlib._bootstrap>:151(__exit__) 73 0.000 0.000 0.000 0.000 <frozen importlib._bootstrap>:157(_get_module_lock) 64 0.000 0.000 0.000 0.000 <frozen importlib._bootstrap>:176(cb) 9 0.000 0.000 0.000 0.000 <frozen importlib._bootstrap>:194(_lock_unlock_module) 108/3 0.000 0.000 0.078 0.026 <frozen importlib._bootstrap>:211(_call_with_frames_removed) 965 0.000 0.000 0.000 0.000 <frozen importlib._bootstrap>:222(_verbose_message) 3 0.000 0.000 0.000 0.000 <frozen importlib._bootstrap>:232(_requires_builtin_wrapper) 58 0.000 0.000 0.000 0.000 <frozen importlib._bootstrap>:307(__init__) 58 0.000 0.000 0.000 0.000 <frozen importlib._bootstrap>:311(__enter__) 58 0.000 0.000 0.000 0.000 <frozen importlib._bootstrap>:318(__exit__) 232 0.000 0.000 0.000 0.000 <frozen importlib._bootstrap>:321(<genexpr>) 39 0.000 0.000 0.000 0.000 <frozen importlib._bootstrap>:35(_new_module) 62 0.000 0.000 0.000 0.000 <frozen importlib._bootstrap>:369(__init__) 94 0.000 0.000 0.001 0.000 <frozen importlib._bootstrap>:403(cached) 70 0.000 0.000 0.000 0.000 <frozen importlib._bootstrap>:416(parent) 58 0.000 0.000 0.000 0.000 <frozen importlib._bootstrap>:424(has_location) 3 0.000 0.000 0.000 0.000 <frozen importlib._bootstrap>:433(spec_from_loader) 58 0.000 0.000 0.001 0.000 <frozen importlib._bootstrap>:504(_init_module_attrs) 58 0.000 0.000 0.006 0.000 <frozen importlib._bootstrap>:576(module_from_spec) 64 0.000 0.000 0.000 0.000 <frozen importlib._bootstrap>:58(__init__) 58/3 0.000 0.000 0.079 0.026 <frozen importlib._bootstrap>:663(_load_unlocked) 62 0.000 0.000 0.000 0.000 <frozen importlib._bootstrap>:719(find_spec) 3 0.000 0.000 0.000 0.000 <frozen importlib._bootstrap>:740(create_module) 3 0.000 0.000 0.000 0.000 <frozen importlib._bootstrap>:748(exec_module) 3 0.000 0.000 0.000 0.000 <frozen importlib._bootstrap>:765(is_package) 73 0.000 0.000 0.000 0.000 <frozen importlib._bootstrap>:78(acquire) 59 0.000 0.000 0.000 0.000 <frozen importlib._bootstrap>:792(find_spec) 180 0.000 0.000 0.000 0.000 <frozen importlib._bootstrap>:855(__enter__) 180 0.000 0.000 0.000 0.000 <frozen importlib._bootstrap>:859(__exit__) 62 0.001 0.000 0.011 0.000 <frozen importlib._bootstrap>:882(_find_spec) 64/2 0.000 0.000 0.082 0.041 <frozen importlib._bootstrap>:948(_find_and_load_unlocked) 64/2 0.000 0.000 0.083 0.041 <frozen importlib._bootstrap>:978(_find_and_load) 16 0.000 0.000 0.000 0.000 <frozen importlib._bootstrap_external>:1029(__init__) 16 0.000 0.000 0.005 0.000 <frozen importlib._bootstrap_external>:1040(create_module) 16 0.000 0.000 0.000 0.000 <frozen importlib._bootstrap_external>:1048(exec_module) 15 0.000 0.000 0.001 0.000 <frozen importlib._bootstrap_external>:105(_write_atomic) 4 0.000 0.000 0.000 0.000 <frozen importlib._bootstrap_external>:1190(_path_hooks) 227 0.000 0.000 0.002 0.000 <frozen importlib._bootstrap_external>:1203(_path_importer_cache) 59 0.000 0.000 0.010 0.000 <frozen importlib._bootstrap_external>:1240(_get_spec) 59 0.000 0.000 0.010 0.000 <frozen importlib._bootstrap_external>:1272(find_spec) 4 0.000 0.000 0.000 0.000 <frozen importlib._bootstrap_external>:1319(__init__) 32 0.000 0.000 0.000 0.000 <frozen importlib._bootstrap_external>:1325(<genexpr>) 55 0.000 0.000 0.000 0.000 <frozen importlib._bootstrap_external>:1351(_get_spec) 179 0.001 0.000 0.008 0.000 <frozen importlib._bootstrap_external>:1356(find_spec) 5 0.000 0.000 0.002 0.000 <frozen importlib._bootstrap_external>:1404(_fill_cache) 5 0.000 0.000 0.000 0.000 <frozen importlib._bootstrap_external>:1433(<setcomp>) 4 0.000 0.000 0.000 0.000 <frozen importlib._bootstrap_external>:1445(path_hook_for_FileFinder) 78 0.000 0.000 0.001 0.000 <frozen importlib._bootstrap_external>:271(cache_from_source) 179 0.000 0.000 0.000 0.000 <frozen importlib._bootstrap_external>:36(_relax_case) 55 0.000 0.000 0.000 0.000 <frozen importlib._bootstrap_external>:369(_get_cached) 21 0.000 0.000 0.001 0.000 <frozen importlib._bootstrap_external>:381(_calc_mode) 39 0.000 0.000 0.000 0.000 <frozen importlib._bootstrap_external>:401(_check_name_wrapper) 18 0.000 0.000 0.000 0.000 <frozen importlib._bootstrap_external>:438(_classify_pyc) 63 0.000 0.000 0.000 0.000 <frozen importlib._bootstrap_external>:46(_w_long) 18 0.000 0.000 0.000 0.000 <frozen importlib._bootstrap_external>:471(_validate_timestamp_pyc) 54 0.000 0.000 0.000 0.000 <frozen importlib._bootstrap_external>:51(_r_long) 18 0.000 0.000 0.001 0.000 <frozen importlib._bootstrap_external>:523(_compile_bytecode) 21 0.000 0.000 0.002 0.000 <frozen importlib._bootstrap_external>:536(_code_to_timestamp_pyc) 880 0.001 0.000 0.001 0.000 <frozen importlib._bootstrap_external>:56(_path_join) 55 0.000 0.000 0.000 0.000 <frozen importlib._bootstrap_external>:574(spec_from_file_location) 880 0.000 0.000 0.001 0.000 <frozen importlib._bootstrap_external>:58(<listcomp>) 105 0.000 0.000 0.000 0.000 <frozen importlib._bootstrap_external>:62(_path_split) 39 0.000 0.000 0.000 0.000 <frozen importlib._bootstrap_external>:719(create_module) 39/3 0.000 0.000 0.079 0.026 <frozen importlib._bootstrap_external>:722(exec_module) 337 0.000 0.000 0.003 0.000 <frozen importlib._bootstrap_external>:74(_path_stat) 21 0.000 0.000 0.046 0.002 <frozen importlib._bootstrap_external>:785(source_to_code) 39 0.000 0.000 0.055 0.001 <frozen importlib._bootstrap_external>:793(get_code) 98 0.000 0.000 0.001 0.000 <frozen importlib._bootstrap_external>:84(_path_is_mode_type) 39 0.000 0.000 0.000 0.000 <frozen importlib._bootstrap_external>:884(__init__) 39 0.000 0.000 0.000 0.000 <frozen importlib._bootstrap_external>:909(get_filename) 60 0.001 0.000 0.003 0.000 <frozen importlib._bootstrap_external>:914(get_data) 67 0.000 0.000 0.001 0.000 <frozen importlib._bootstrap_external>:93(_path_isfile) 39 0.000 0.000 0.000 0.000 <frozen importlib._bootstrap_external>:951(path_stats) 21 0.000 0.000 0.002 0.000 <frozen importlib._bootstrap_external>:956(_cache_bytecode) 21 0.000 0.000 0.001 0.000 <frozen importlib._bootstrap_external>:961(set_data) 31 0.000 0.000 0.000 0.000 <frozen importlib._bootstrap_external>:98(_path_isdir) 1 0.000 0.000 0.000 0.000 <string>:1(<module>) 2 0.000 0.000 0.000 0.000 __init__.py:1(<module>) 1 0.000 0.000 0.000 0.000 __init__.py:1000(__init__) 1 0.000 0.000 0.000 0.000 __init__.py:1070(FileHandler) 1 0.000 0.000 0.000 0.000 __init__.py:1139(_StderrHandler) 1 0.000 0.000 0.000 0.000 __init__.py:1145(__init__) 1 0.000 0.000 0.000 0.000 __init__.py:1163(PlaceHolder) 1 0.000 0.000 0.000 0.000 __init__.py:1205(Manager) 1 0.000 0.000 0.000 0.000 __init__.py:1210(__init__) 1 0.000 0.000 0.000 0.000 __init__.py:1326(Logger) 1 0.000 0.000 0.000 0.000 __init__.py:1341(__init__) 5 0.000 0.000 0.000 0.000 __init__.py:1373(info) 1 0.000 0.000 0.013 0.013 __init__.py:15(<module>) 1 0.000 0.000 0.000 0.000 __init__.py:1531(addHandler) 1 0.000 0.000 0.000 0.000 __init__.py:1605(getEffectiveLevel) 5 0.000 0.000 0.000 0.000 __init__.py:1619(isEnabledFor) 1 0.000 0.000 0.000 0.000 __init__.py:1667(RootLogger) 1 0.000 0.000 0.000 0.000 __init__.py:1673(__init__) 1 0.000 0.000 0.000 0.000 __init__.py:1684(LoggerAdapter) 1 0.000 0.000 0.000 0.000 __init__.py:1832(basicConfig) 3 0.000 0.000 0.000 0.000 __init__.py:187(_checkLevel) 5 0.000 0.000 0.000 0.000 __init__.py:1986(info) 1 0.000 0.000 0.000 0.000 __init__.py:2059(NullHandler) 5 0.000 0.000 0.000 0.000 __init__.py:212(_acquireLock) 37 0.000 0.000 0.000 0.000 __init__.py:22(<genexpr>) 5 0.000 0.000 0.000 0.000 __init__.py:221(_releaseLock) 1 0.000 0.000 0.002 0.002 __init__.py:24(<module>) 2 0.000 0.000 0.000 0.000 __init__.py:246(_register_at_fork_acquire_release) 1 0.000 0.000 0.000 0.000 __init__.py:281(LogRecord) 6 0.000 0.000 0.001 0.000 __init__.py:316(namedtuple) 31 0.000 0.000 0.000 0.000 __init__.py:388(<genexpr>) 1 0.000 0.000 0.000 0.000 __init__.py:420(PercentStyle) 2 0.000 0.000 0.000 0.000 __init__.py:426(__init__) 1 0.000 0.000 0.000 0.000 __init__.py:435(StrFormatStyle) 1 0.000 0.000 0.000 0.000 __init__.py:444(StringTemplateStyle) 1 0.000 0.000 0.000 0.000 __init__.py:468(Formatter) 2 0.000 0.000 0.000 0.000 __init__.py:513(__init__) 1 0.000 0.000 0.000 0.000 __init__.py:643(BufferingFormatter) 1 0.000 0.000 0.000 0.000 __init__.py:685(Filter) 1 0.000 0.000 0.000 0.000 __init__.py:722(Filterer) 3 0.000 0.000 0.000 0.000 __init__.py:727(__init__) 2 0.000 0.000 0.000 0.000 __init__.py:794(_addHandlerRef) 1 0.000 0.000 0.000 0.000 __init__.py:804(Handler) 2 0.000 0.000 0.000 0.000 __init__.py:813(__init__) 2 0.000 0.000 0.000 0.000 __init__.py:842(createLock) 1 0.000 0.000 0.000 0.000 __init__.py:910(setFormatter) 1 0.000 0.000 0.000 0.000 __init__.py:991(StreamHandler) 4 0.000 0.000 0.000 0.000 _bootlocale.py:33(getpreferredencoding) 1 0.000 0.000 0.000 0.000 _bootlocale.py:5(<module>) 3 0.000 0.000 0.000 0.000 _collections_abc.py:659(get) 43 0.000 0.000 0.000 0.000 _compat_pickle.py:165(<genexpr>) 85 0.000 0.000 0.000 0.000 _compat_pickle.py:167(<genexpr>) 1 0.000 0.000 0.000 0.000 _compat_pickle.py:9(<module>) 1 0.000 0.000 0.000 0.000 _compression.py:1(<module>) 1 0.000 0.000 0.000 0.000 _compression.py:33(DecompressReader) 1 0.000 0.000 0.000 0.000 _compression.py:9(BaseStream) 3 0.000 0.000 0.000 0.000 _weakrefset.py:36(__init__) 3 0.000 0.000 0.000 0.000 _weakrefset.py:81(add) 1 0.000 0.000 0.000 0.000 abc.py:1(<module>) 14 0.000 0.000 0.000 0.000 abc.py:125(__new__) 1 0.000 0.000 0.000 0.000 abc.py:130(register) 1 0.000 0.000 0.000 0.000 abc.py:141(__subclasscheck__) 4 0.000 0.000 0.000 0.000 abc.py:7(abstractmethod) 1 0.000 0.000 0.078 0.078 archive.py:1(<module>) 1 0.000 0.000 33.456 33.456 archive.py:113(hashes_for_path_list) 1 0.000 0.000 24.199 24.199 archive.py:128(create_tar_archive) 1 0.000 0.000 0.023 0.023 archive.py:154(create_archive_listing) 1 0.000 0.000 608.133 608.133 archive.py:162(compress_using_lzip) 1 0.000 0.000 32.440 32.440 archive.py:174(create_and_write_archive_hash) 1 0.000 0.000 4.058 4.058 archive.py:180(create_and_write_compressed_archive_hash) 1 0.000 0.000 702.314 702.314 archive.py:35(create_archive) 1 0.000 0.000 33.460 33.460 archive.py:96(create_file_listing_hash) 1 0.000 0.000 0.000 0.000 bisect.py:1(<module>) 1 0.000 0.000 0.000 0.000 bz2.py:28(BZ2File) 1 0.000 0.000 0.002 0.002 bz2.py:5(<module>) 4 0.000 0.000 0.000 0.000 codecs.py:186(__init__) 1 0.000 0.000 0.000 0.000 constants.py:1(<module>) 1 0.000 0.000 0.012 0.012 context.py:1(<module>) 1 0.000 0.000 0.000 0.000 context.py:14(ProcessError) 1 0.000 0.000 0.000 0.000 context.py:17(BufferTooShort) 1 0.000 0.000 0.000 0.000 context.py:20(TimeoutError) 1 0.000 0.000 0.000 0.000 context.py:202(reducer) 1 0.000 0.000 0.000 0.000 context.py:219(Process) 1 0.000 0.000 0.000 0.000 context.py:225(DefaultContext) 1 0.000 0.000 0.000 0.000 context.py:228(__init__) 1 0.000 0.000 0.000 0.000 context.py:23(AuthenticationError) 1 0.000 0.000 0.000 0.000 context.py:264(<listcomp>) 1 0.000 0.000 0.000 0.000 context.py:272(ForkProcess) 1 0.000 0.000 0.000 0.000 context.py:279(SpawnProcess) 1 0.000 0.000 0.000 0.000 context.py:286(ForkServerProcess) 1 0.000 0.000 0.000 0.000 context.py:293(ForkContext) 1 0.000 0.000 0.000 0.000 context.py:297(SpawnContext) 1 0.000 0.000 0.000 0.000 context.py:30(BaseContext) 1 0.000 0.000 0.000 0.000 context.py:301(ForkServerContext) 1 0.000 0.000 0.000 0.000 encryption.py:1(<module>) 7 0.000 0.000 0.000 0.000 enum.py:125(__prepare__) 7 0.000 0.000 0.001 0.000 enum.py:135(__new__) 7 0.000 0.000 0.000 0.000 enum.py:152(<dictcomp>) 7 0.000 0.000 0.000 0.000 enum.py:177(<setcomp>) 71 0.000 0.000 0.000 0.000 enum.py:18(_is_descriptor) 21 0.000 0.000 0.000 0.000 enum.py:198(<genexpr>) 85 0.000 0.000 0.000 0.000 enum.py:26(_is_dunder) 19 0.000 0.000 0.002 0.000 enum.py:284(__call__) 7 0.000 0.000 0.000 0.000 enum.py:335(__getattr__) 85 0.000 0.000 0.000 0.000 enum.py:34(_is_sunder) 7 0.000 0.000 0.000 0.000 enum.py:360(__members__) 120 0.000 0.000 0.000 0.000 enum.py:376(__setattr__) 7 0.000 0.000 0.002 0.000 enum.py:389(_create_) 21 0.000 0.000 0.000 0.000 enum.py:442(_get_mixins_) 21 0.000 0.000 0.000 0.000 enum.py:453(_find_data_type) 7 0.000 0.000 0.000 0.000 enum.py:474(_find_new_) 12 0.000 0.000 0.000 0.000 enum.py:526(__new__) 11 0.000 0.000 0.000 0.000 enum.py:623(name) 4 0.000 0.000 0.000 0.000 enum.py:628(value) 7 0.000 0.000 0.002 0.000 enum.py:633(_convert) 7 0.000 0.000 0.000 0.000 enum.py:64(__init__) 7 0.000 0.000 0.001 0.000 enum.py:654(<listcomp>) 71 0.000 0.000 0.000 0.000 enum.py:659(<lambda>) 85 0.000 0.000 0.000 0.000 enum.py:70(__setitem__) 1 0.000 0.000 0.000 0.000 enum.py:793(_missing_) 1 0.000 0.000 0.000 0.000 enum.py:800(_create_pseudo_member_) 1 0.000 0.000 0.000 0.000 enum.py:830(__or__) 5 0.000 0.000 0.000 0.000 enum.py:836(__and__) 1 0.000 0.000 0.000 0.000 enum.py:855(_high_bit) 1 0.000 0.000 0.000 0.000 enum.py:872(_decompose) 1 0.000 0.000 0.000 0.000 enum.py:890(<listcomp>) 2 0.000 0.000 0.000 0.000 enum.py:901(<lambda>) 2 0.000 0.000 0.000 0.000 enum.py:907(_power_of_two) 1 0.000 0.000 0.000 0.000 fnmatch.py:11(<module>) 7 0.000 0.000 0.000 0.000 functools.py:37(update_wrapper) 2 0.000 0.000 0.000 0.000 functools.py:445(lru_cache) 2 0.000 0.000 0.000 0.000 functools.py:479(decorating_function) 5 0.000 0.000 0.000 0.000 functools.py:67(wraps) 14 0.000 0.000 0.001 0.000 hashlib.py:116(__get_openssl_constructor) 1 0.000 0.000 0.002 0.002 hashlib.py:54(<module>) 8 0.000 0.000 0.001 0.000 hashlib.py:73(__get_builtin_constructor) 1 0.000 0.000 0.014 0.014 helpers.py:1(<module>) 1 0.000 0.000 0.000 0.000 helpers.py:254(handle_destination_directory_creation) 1 0.000 0.000 0.000 0.000 helpers.py:290(terminate_if_path_nonexistent) 2 0.000 0.000 0.000 0.000 helpers.py:35(get_absolute_path_string) 2 0.006 0.003 36.497 18.249 helpers.py:39(create_and_write_file_hash) 61 1.742 0.029 69.812 1.144 helpers.py:48(get_file_hash_from_path) 508 0.002 0.000 14.501 0.029 helpers.py:56(<lambda>) 1 0.124 0.124 33.456 33.456 helpers.py:70(hash_listing_for_files_in_folder) 1 0.000 0.000 0.002 0.002 linecache.py:6(<module>) 1 0.000 0.000 0.000 0.000 lzma.py:38(LZMAFile) 1 0.000 0.000 0.001 0.001 lzma.py:9(<module>) 1 0.000 0.000 0.001 0.001 ntpath.py:6(<module>) 1 0.000 0.000 0.000 0.000 os.py:1076(__subclasshook__) 48/13 0.000 0.000 0.006 0.000 os.py:278(walk) 1 0.000 0.000 0.000 0.000 os.py:40(_get_exports_list) 1 0.000 0.000 0.000 0.000 os.py:44(<listcomp>) 3 0.000 0.000 0.000 0.000 os.py:616(get_exec_path) 6 0.000 0.000 0.000 0.000 os.py:673(__getitem__) 6 0.000 0.000 0.000 0.000 os.py:751(encode) 3 0.000 0.000 0.000 0.000 os.py:755(decode) 30 0.000 0.000 0.000 0.000 os.py:803(fsencode) 1 0.000 0.000 0.000 0.000 parse.py:126(_ResultMixinStr) 1 0.000 0.000 0.000 0.000 parse.py:134(_ResultMixinBytes) 1 0.000 0.000 0.000 0.000 parse.py:142(_NetlocResultMixinBase) 1 0.000 0.000 0.000 0.000 parse.py:175(_NetlocResultMixinStr) 1 0.000 0.000 0.000 0.000 parse.py:205(_NetlocResultMixinBytes) 1 0.000 0.000 0.001 0.001 parse.py:28(<module>) 1 0.000 0.000 0.000 0.000 parse.py:310(DefragResult) 1 0.000 0.000 0.000 0.000 parse.py:318(SplitResult) 1 0.000 0.000 0.000 0.000 parse.py:323(ParseResult) 1 0.000 0.000 0.000 0.000 parse.py:329(DefragResultBytes) 1 0.000 0.000 0.000 0.000 parse.py:337(SplitResultBytes) 1 0.000 0.000 0.000 0.000 parse.py:342(ParseResultBytes) 1 0.000 0.000 0.000 0.000 parse.py:348(_fix_result_transcoding) 1 0.000 0.000 0.000 0.000 parse.py:757(Quoter) 1 0.000 0.000 0.013 0.013 pathlib.py:1(<module>) 125 0.000 0.000 0.000 0.000 pathlib.py:100(join_parsed_parts) 14 0.000 0.000 0.000 0.000 pathlib.py:1000(__new__) 206 0.000 0.000 0.000 0.000 pathlib.py:1010(_init) 5 0.000 0.000 0.000 0.000 pathlib.py:1118(absolute) 4 0.000 0.000 0.000 0.000 pathlib.py:1156(stat) 1 0.000 0.000 0.000 0.000 pathlib.py:118(_WindowsFlavour) 1 0.000 0.000 0.000 0.000 pathlib.py:1244(mkdir) 61 0.000 0.000 0.002 0.000 pathlib.py:1297(lstat) 3 0.000 0.000 0.000 0.000 pathlib.py:1334(exists) 1 0.000 0.000 0.000 0.000 pathlib.py:134(<setcomp>) 1 0.000 0.000 0.000 0.000 pathlib.py:1346(is_dir) 1 0.000 0.000 0.000 0.000 pathlib.py:135(<setcomp>) 61 0.000 0.000 0.002 0.000 pathlib.py:1394(is_symlink) 1 0.000 0.000 0.000 0.000 pathlib.py:1470(PosixPath) 1 0.000 0.000 0.000 0.000 pathlib.py:1477(WindowsPath) 1 0.000 0.000 0.000 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objects} 43 0.000 0.000 0.000 0.000 {method 'decode' of 'bytes' objects} 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects} 344 0.000 0.000 0.000 0.000 {method 'encode' of 'str' objects} 279 0.000 0.000 0.000 0.000 {method 'endswith' of 'bytes' objects} 90 0.000 0.000 0.000 0.000 {method 'endswith' of 'str' objects} 84 0.000 0.000 0.000 0.000 {method 'extend' of 'bytearray' objects} 32 0.000 0.000 0.000 0.000 {method 'extend' of 'list' objects} 5 0.000 0.000 0.000 0.000 {method 'fileno' of '_io.TextIOWrapper' objects} 72 0.000 0.000 0.000 0.000 {method 'find' of 'bytearray' objects} 35/30 0.000 0.000 0.000 0.000 {method 'format' of 'str' objects} 178 0.000 0.000 0.000 0.000 {method 'get' of 'dict' objects} 120 0.000 0.000 0.000 0.000 {method 'get' of 'mappingproxy' objects} 83 0.000 0.000 0.000 0.000 {method 'getrandbits' of '_random.Random' objects} 11 0.000 0.000 0.000 0.000 {method 'group' of 're.Match' objects} 74 0.001 0.000 0.001 0.000 {method 'hexdigest' of '_hashlib.HASH' objects} 31 0.000 0.000 0.000 0.000 {method 'insert' of 'list' objects} 75 0.000 0.000 0.000 0.000 {method 'is_dir' of 'posix.DirEntry' objects} 35 0.000 0.000 0.000 0.000 {method 'isidentifier' of 'str' objects} 949 0.000 0.000 0.000 0.000 {method 'isupper' of 'str' objects} 71 0.000 0.000 0.000 0.000 {method 'items' of 'collections.OrderedDict' objects} 13 0.000 0.000 0.000 0.000 {method 'items' of 'dict' objects} 37 0.000 0.000 0.000 0.000 {method 'items' of 'mappingproxy' objects} 1331 0.000 0.000 0.001 0.000 {method 'join' of 'str' objects} 7 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects} 66 0.000 0.000 0.000 0.000 {method 'lower' of 'str' objects} 193 0.000 0.000 0.000 0.000 {method 'lstrip' of 'str' objects} 113 0.000 0.000 0.000 0.000 {method 'match' of 're.Pattern' objects} 7 0.000 0.000 0.000 0.000 {method 'mro' of 'type' objects} 27 0.000 0.000 0.000 0.000 {method 'pop' of 'dict' objects} 564 24.871 0.044 24.871 0.044 {method 'read' of '_io.BufferedReader' objects} 39 0.027 0.001 0.027 0.001 {method 'read' of '_io.FileIO' objects} 5 0.000 0.000 0.000 0.000 {method 'release' of '_thread.RLock' objects} 2 0.000 0.000 0.000 0.000 {method 'release' of '_thread.lock' objects} 31 0.000 0.000 0.000 0.000 {method 'remove' of 'list' objects} 147 0.000 0.000 0.000 0.000 {method 'replace' of 'str' objects} 443 0.000 0.000 0.000 0.000 {method 'reverse' of 'list' objects} 31 0.000 0.000 0.000 0.000 {method 'rfind' of 'bytes' objects} 501 0.000 0.000 0.000 0.000 {method 'rpartition' of 'str' objects} 1838 0.000 0.000 0.000 0.000 {method 'rstrip' of 'str' objects} 8 0.000 0.000 0.000 0.000 {method 'setdefault' of 'dict' objects} 10 0.000 0.000 0.000 0.000 {method 'setter' of 'property' objects} 8 0.000 0.000 0.000 0.000 {method 'sort' of 'list' objects} 11 0.000 0.000 0.000 0.000 {method 'split' of 're.Pattern' objects} 236 0.000 0.000 0.000 0.000 {method 'split' of 'str' objects} 279 0.000 0.000 0.000 0.000 {method 'startswith' of 'bytes' objects} 907 0.000 0.000 0.000 0.000 {method 'startswith' of 'str' objects} 22 0.000 0.000 0.000 0.000 {method 'strip' of 'str' objects} 11 0.000 0.000 0.001 0.000 {method 'sub' of 're.Pattern' objects} 63 0.000 0.000 0.000 0.000 {method 'to_bytes' of 'int' objects} 8 0.000 0.000 0.000 0.000 {method 'translate' of 'bytearray' objects} 1 0.000 0.000 0.000 0.000 {method 'translate' of 'str' objects} 1 0.000 0.000 0.000 0.000 {method 'union' of 'set' objects} 474 59.568 0.126 59.568 0.126 {method 'update' of '_hashlib.HASH' objects} 19 0.000 0.000 0.000 0.000 {method 'update' of 'dict' objects} 47 0.000 0.000 0.000 0.000 {method 'upper' of 'str' objects} 1 0.000 0.000 0.000 0.000 {method 'values' of 'dict' objects} 1 0.000 0.000 0.000 0.000 {method 'write' of '_io.BufferedWriter' objects} 79 0.000 0.000 0.000 0.000 {method 'write' of '_io.TextIOWrapper' objects}
The text was updated successfully, but these errors were encountered:
No branches or pull requests
Data for benchmark:
A_thaliana_200G
CPU: 6 core, 12 threads, 2.2 GHz
Using cProfile for profiling
Create Archive
No splitting, unencrypted
4GB splitting, unencrypted
No Splitting, encrypted
4GB splitting, encrypted
The text was updated successfully, but these errors were encountered: