INSTALL.md

Before using oqtans package,

Run

bash ./oqtans_make.sh all

to compile all needed software components of oqtans tools.

Include the content of

tool_conf.xml.oqtans into your GALAXY tool_conf.xml file

and SEE the README file for integrating built-in genome reference index to the tools.

Source oqtans/oqtans_config.sh and restart galaxy instace.

Now you should be able to use oqtans with or without your GALAXY instance.