From 67bc3bcf6e33c29a33053c26548f021515766bd0 Mon Sep 17 00:00:00 2001
From: Marc Zimmermann <marc.zimmermann@inf.ethz.ch>
Date: Wed, 6 Oct 2021 14:52:41 +0200
Subject: [PATCH] determining temporary workdir correctly when using relative
 path for output corpus

---
 .../deidentifier/workflows/WriteToSerializedCorpus.java         | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/deidentifier-pipeline/src/main/java/org/ratschlab/deidentifier/workflows/WriteToSerializedCorpus.java b/deidentifier-pipeline/src/main/java/org/ratschlab/deidentifier/workflows/WriteToSerializedCorpus.java
index 8c93229..e0a0799 100644
--- a/deidentifier-pipeline/src/main/java/org/ratschlab/deidentifier/workflows/WriteToSerializedCorpus.java
+++ b/deidentifier-pipeline/src/main/java/org/ratschlab/deidentifier/workflows/WriteToSerializedCorpus.java
@@ -29,7 +29,7 @@ public WriteToSerializedCorpus(File corpusOutputDir, int threads, Optional<Funct
             FileUtils.deleteDirectory(corpusOutputDir);
         }
 
-        workerTmpDir = new File(corpusOutputDir.getParentFile() + File.separator +  corpusOutputDir.getName() + "_tmp");
+        workerTmpDir = new File(corpusOutputDir.getAbsoluteFile().getParentFile() + File.separator +  corpusOutputDir.getName() + "_tmp");
 
         // every parallel instance of the GATE pipeline has its own output corpus (for performance reasons)
         corpusDirs = IntStream.range(0, threads).