environment.yml

name: histoplexer
channels:
  - pytorch
  - fastai
  - anaconda
  - nvidia
  - conda-forge
  - defaults
dependencies:
  - _libgcc_mutex=0.1
  - _openmp_mutex=4.5
  - absl-py=0.15.0
  - aiohttp=3.8.1
  - aiosignal=1.2.0
  - alsa-lib=1.2.3
  - anyio=3.6.2
  - argon2-cffi=21.3.0
  - argon2-cffi-bindings=21.2.0
  - arpack=3.7.0
  - asciitree=0.3.3
  - async-timeout=4.0.2
  - attrs=21.4.0
  - babel=2.11.0
  - backcall=0.2.0
  - beautifulsoup4=4.11.1
  - blas=1.0
  - bleach=4.1.0
  - blinker=1.4
  - bokeh=2.4.3
  - bottleneck=1.3.4
  - brotli=1.0.9
  - brotlipy=0.7.0
  - bzip2=1.0.8
  - c-ares=1.18.1
  - ca-certificates=2024.2.2
  - cached-property=1.5.2
  - cached_property=1.5.2
  - cachetools=4.2.2
  - cairo=1.16.0
  - certifi=2023.11.17
  - cffi=1.15.0
  - charset-normalizer=2.0.4
  - click=8.0.4
  - cloudpickle=2.0.0
  - colorama=0.4.6
  - cryptography=36.0.0
  - cuda=11.7.1
  - cuda-cccl=11.7.91
  - cuda-command-line-tools=11.7.1
  - cuda-compiler=11.7.1
  - cuda-cudart=11.7.99
  - cuda-cudart-dev=11.7.99
  - cuda-cuobjdump=11.7.91
  - cuda-cupti=11.7.101
  - cuda-cuxxfilt=11.7.91
  - cuda-demo-suite=12.0.76
  - cuda-documentation=12.0.76
  - cuda-driver-dev=11.7.99
  - cuda-gdb=12.0.90
  - cuda-libraries=11.7.1
  - cuda-libraries-dev=11.7.1
  - cuda-memcheck=11.8.86
  - cuda-nsight=12.0.78
  - cuda-nsight-compute=12.0.0
  - cuda-nvcc=11.7.99
  - cuda-nvdisasm=12.0.76
  - cuda-nvml-dev=11.7.91
  - cuda-nvprof=12.0.90
  - cuda-nvprune=11.7.91
  - cuda-nvrtc=11.7.99
  - cuda-nvrtc-dev=11.7.99
  - cuda-nvtx=11.7.91
  - cuda-nvvp=12.0.90
  - cuda-runtime=11.7.1
  - cuda-sanitizer-api=12.0.90
  - cuda-toolkit=11.7.1
  - cuda-tools=11.7.1
  - cuda-visual-tools=11.7.1
  - cudatoolkit=11.3.1
  - cycler=0.11.0
  - cytoolz=0.11.0
  - dask=2022.2.1
  - dask-core=2022.2.1
  - dask-image=2023.3.0
  - dataclasses=0.8
  - dbus=1.13.18
  - decorator=5.1.1
  - defusedxml=0.7.1
  - distributed=2022.2.1
  - docrep=0.3.2
  - entrypoints=0.4
  - enum34=1.1.10
  - et_xmlfile=1.1.0
  - expat=2.4.4
  - fasteners=0.17.3
  - ffmpeg=4.3.2
  - font-ttf-dejavu-sans-mono=2.37
  - font-ttf-inconsolata=2.001
  - font-ttf-source-code-pro=2.030
  - font-ttf-ubuntu=0.83
  - fontconfig=2.13.96
  - fonts-anaconda=1
  - fonts-conda-ecosystem=1
  - fonttools=4.25.0
  - freeglut=3.2.2
  - freetype=2.11.0
  - frozenlist=1.2.0
  - gdk-pixbuf=2.42.6
  - gds-tools=1.5.0.59
  - geos=3.10.2
  - get-annotations=0.1.2
  - gettext=0.21.0
  - giflib=5.2.1
  - glib=2.70.2
  - glib-tools=2.70.2
  - glpk=4.65
  - gmp=6.2.1
  - gnutls=3.6.15
  - google-auth=1.33.0
  - google-auth-oauthlib=0.4.4
  - graphite2=1.3.14
  - grpcio=1.42.0
  - gst-plugins-base=1.18.5
  - gstreamer=1.18.5
  - h5py=3.6.0
  - harfbuzz=3.4.0
  - hdf5=1.12.1
  - icu=69.1
  - idna=3.3
  - igraph=0.9.7
  - imagecodecs-lite=2019.12.3
  - imageio=2.9.0
  - importlib-metadata=4.11.3
  - importlib_resources=5.2.0
  - inflect=5.6.2
  - intel-openmp=2021.4.0
  - ipython=7.31.1
  - ipython_genutils=0.2.0
  - jasper=2.0.33
  - jbig=2.1
  - jedi=0.18.1
  - jinja2=3.0.3
  - joblib=1.1.0
  - jpeg=9e
  - json5=0.9.5
  - jsonschema=4.4.0
  - jupyter_client=7.2.2
  - jupyter_server=1.23.4
  - jupyterlab=3.5.2
  - jupyterlab_pygments=0.1.2
  - jupyterlab_server=2.10.3
  - kiwisolver=1.3.2
  - kornia=0.6.10
  - krb5=1.19.2
  - lame=3.100
  - lcms2=2.12
  - ld_impl_linux-64=2.35.1
  - leidenalg=0.8.9
  - lerc=3.0
  - libblas=3.9.0
  - libcblas=3.9.0
  - libclang=13.0.1
  - libcublas=11.10.3.66
  - libcublas-dev=11.10.3.66
  - libcufft=10.7.2.124
  - libcufft-dev=10.7.2.124
  - libcufile=1.5.0.59
  - libcufile-dev=1.5.0.59
  - libcurand=10.3.1.50
  - libcurand-dev=10.3.1.50
  - libcurl=7.82.0
  - libcusolver=11.4.0.1
  - libcusolver-dev=11.4.0.1
  - libcusparse=11.7.4.91
  - libcusparse-dev=11.7.4.91
  - libdeflate=1.10
  - libedit=3.1.20210910
  - libev=4.33
  - libevent=2.1.10
  - libffi=3.4.2
  - libgcc-ng=11.2.0
  - libgfortran-ng=7.5.0
  - libgfortran4=7.5.0
  - libglib=2.70.2
  - libglu=9.0.0
  - libiconv=1.16
  - libidn2=2.3.2
  - liblapack=3.9.0
  - liblapacke=3.9.0
  - libllvm11=11.1.0
  - libllvm13=13.0.1
  - libnghttp2=1.46.0
  - libnpp=11.7.4.75
  - libnpp-dev=11.7.4.75
  - libnsl=2.0.0
  - libnvjpeg=11.8.0.2
  - libnvjpeg-dev=11.8.0.2
  - libogg=1.3.5
  - libopencv=4.5.5
  - libopus=1.3.1
  - libpng=1.6.37
  - libpq=14.2
  - libprotobuf=3.19.4
  - libsodium=1.0.18
  - libssh2=1.9.0
  - libstdcxx-ng=11.2.0
  - libtasn1=4.16.0
  - libtiff=4.3.0
  - libunistring=0.9.10
  - libuuid=2.32.1
  - libuv=1.40.0
  - libvorbis=1.3.7
  - libwebp=1.2.2
  - libwebp-base=1.2.2
  - libxcb=1.13
  - libxkbcommon=1.0.3
  - libxml2=2.9.12
  - libzlib=1.2.11
  - lightning-utilities=0.9.0
  - llvm-openmp=13.0.1
  - llvmlite=0.38.1
  - locket=0.2.1
  - lz4-c=1.9.3
  - markdown=3.3.4
  - markupsafe=2.0.1
  - matplotlib-inline=0.1.2
  - matplotlib-scalebar=0.8.1
  - memory_profiler=0.61.0
  - metis=5.1.0
  - mistune=0.8.4
  - mkl=2021.4.0
  - mkl-service=2.4.0
  - mkl_fft=1.3.1
  - mkl_random=1.2.2
  - mpfr=4.1.0
  - msgpack-python=1.0.3
  - multidict=6.0.2
  - munkres=1.1.4
  - mysql-common=8.0.28
  - mysql-libs=8.0.28
  - nbclassic=0.4.8
  - nbclient=0.5.13
  - nbconvert=6.4.4
  - nbformat=5.3.0
  - ncurses=6.3
  - nest-asyncio=1.5.5
  - nettle=3.7.3
  - networkx=2.7.1
  - notebook=6.5.2
  - notebook-shim=0.2.2
  - nsight-compute=2022.4.0.15
  - nspr=4.33
  - nss=3.74
  - numba=0.55.1
  - numcodecs=0.9.1
  - numexpr=2.8.1
  - numpy=1.21.2
  - numpy-base=1.21.2
  - oauthlib=3.2.1
  - omnipath=1.0.8
  - opencv=4.5.5
  - opencv-python-headless=4.6.0.66
  - openh264=2.1.1
  - openjpeg=2.4.0
  - openpyxl=3.0.10
  - openslide=3.4.1
  - openslide-python=1.1.2
  - openssl=1.1.1o
  - packaging=21.3
  - pandas=1.4.1
  - pandocfilters=1.5.0
  - parso=0.8.3
  - partd=1.2.0
  - pathlib=1.0.1
  - patsy=0.5.6
  - pcre=8.45
  - pexpect=4.8.0
  - pickleshare=0.7.5
  - pillow=9.0.1
  - pims=0.6.1
  - pip=21.2.4
  - pixman=0.40.0
  - prometheus_client=0.13.1
  - protobuf=3.19.4
  - pthread-stubs=0.3
  - ptyprocess=0.7.0
  - py-opencv=4.5.5
  - pyasn1=0.4.8
  - pyasn1-modules=0.2.8
  - pycparser=2.21
  - pygments=2.11.2
  - pyjwt=2.4.0
  - pynndescent=0.5.11
  - pyopenssl=22.0.0
  - pyparsing=3.0.4
  - pyqt=5.12.3
  - pyqt-impl=5.12.3
  - pyqt5-sip=4.19.18
  - pyqtchart=5.12
  - pyqtwebengine=5.12.1
  - pyrsistent=0.18.0
  - pysocks=1.7.1
  - python=3.8.12
  - python-dateutil=2.8.2
  - python-fastjsonschema=2.15.1
  - python-igraph=0.9.9
  - python_abi=3.8
  - pytorch=1.13.1
  - pytorch-cuda=11.7
  - pytorch-mutex=1.0
  - pytz=2021.3
  - pywavelets=1.3.0
  - pyyaml=6.0
  - pyzmq=22.3.0
  - qt=5.12.9
  - readline=8.1.2
  - requests=2.27.1
  - requests-oauthlib=1.3.0
  - rsa=4.7.2
  - scanpy=1.9.6
  - scikit-image=0.19.2
  - scikit-learn=1.1.3
  - scipy=1.7.3
  - seaborn=0.11.2
  - send2trash=1.8.0
  - session-info=1.0.0
  - setuptools=61.2.0
  - shapely=1.8.1
  - six=1.16.0
  - slicerator=1.1.0
  - sniffio=1.3.0
  - sortedcontainers=2.4.0
  - soupsieve=2.3.1
  - sqlite=3.38.2
  - squidpy=1.2.2
  - statsmodels=0.13.2
  - stdlib-list=0.10.0
  - suitesparse=5.10.1
  - tbb=2021.5.0
  - tblib=3.0.0
  - tensorboard=2.4.0
  - tensorboard-plugin-wit=1.8.1
  - terminado=0.13.1
  - testpath=0.5.0
  - texttable=1.7.0
  - threadpoolctl=2.2.0
  - tk=8.6.11
  - tomli=2.0.1
  - toolz=0.11.2
  - torchaudio=0.13.1
  - torchinfo=1.7.1
  - torchmetrics=1.1.2
  - torchvision=0.14.1
  - tornado=6.1
  - tqdm=4.64.1
  - umap-learn=0.5.5
  - urllib3=1.26.9
  - validators=0.22.0
  - wcwidth=0.2.5
  - webencodings=0.5.1
  - websocket-client=1.4.2
  - werkzeug=2.0.3
  - wheel=0.37.1
  - wrapt=1.14.1
  - x264=1!161.3030
  - xarray=2023.1.0
  - xorg-fixesproto=5.0
  - xorg-inputproto=2.3.2
  - xorg-kbproto=1.0.7
  - xorg-libice=1.0.10
  - xorg-libsm=1.2.3
  - xorg-libx11=1.7.2
  - xorg-libxau=1.0.9
  - xorg-libxdmcp=1.1.3
  - xorg-libxext=1.3.4
  - xorg-libxfixes=5.0.3
  - xorg-libxi=1.7.10
  - xorg-libxrender=0.9.10
  - xorg-renderproto=0.11.1
  - xorg-xextproto=7.3.0
  - xorg-xproto=7.0.31
  - xz=5.2.5
  - yaml=0.2.5
  - yarl=1.8.1
  - zarr=2.12.0
  - zeromq=4.3.4
  - zict=3.0.0
  - zipp=3.7.0
  - zlib=1.2.11
  - zstd=1.5.2
  - pip:
      - aicsimageio==4.13.0
      - aicspylibczi==3.2.0
      - aiobotocore==2.5.4
      - aioitertools==0.12.0
      - anndata==0.7.8
      - annotated-types==0.7.0
      - botocore==1.31.17
      - comm==0.1.4
      - contourpy==1.1.1
      - czifile==2019.7.2
      - debugpy==1.6.3
      - elementpath==4.5.0
      - fsspec==2023.6.0
      - hta==0.1.0
      - imagecodecs==2023.3.16
      - ipykernel==6.17.1
      - ipympl==0.9.3
      - ipywidgets==8.1.1
      - jmespath==1.0.1
      - jupyter==1.0.0
      - jupyter-console==6.6.3
      - jupyter-core==5.3.1
      - jupyterlab-widgets==3.0.9
      - lxml==4.9.4
      - matplotlib==3.7.5
      - memory-profiler==0.52.0
      - natsort==8.0.2
      - ome-types==0.5.2
      - ome-zarr==0.9.0
      - papermill==2.5.0
      - patool==1.12
      - pkgconfig==1.5.5
      - platformdirs==3.10.0
      - prompt-toolkit==3.0.39
      - psutil==5.9.1
      - pydantic==2.9.2
      - pydantic-compat==0.1.2
      - pydantic-core==2.23.4
      - pyssim==0.5
      - pytorch-fid==0.2.1
      - pytorch-lightning==2.2.0.post0
      - pyvips==2.2.3
      - qtconsole==5.4.4
      - qtpy==2.4.0
      - resource-backed-dask-array==0.1.0
      - s3fs==2023.6.0
      - slideio==2.5.0
      - tenacity==8.2.3
      - tifffile==2023.2.28
      - torch-fidelity==0.3.0
      - torchstain==1.3.0
      - traitlets==5.10.0
      - typing-extensions==4.9.0
      - widgetsnbextension==4.0.9
      - xlrd==1.2.0
      - xmlschema==3.4.2
      - xsdata==24.3.1
prefix: /home/sonali/miniconda3/envs/mvsenv