separating pinned and unpinned dependencies (#47)

.github/workflows/tests.yml → .github/workflows/test_pinned_deps.yml

@@ -11,7 +11,7 @@ jobs:
     strategy:
       fail-fast: false
       matrix:
-        os: [macos-latest, ubuntu-latest]
+        os: [macos-latest, ubuntu-latest, windows-latest]
         python-version: ["3.12"]
 
     name: Build wheel on ${{ matrix.os }}
@@ -36,6 +36,9 @@ jobs:
       - name: Install package
         run: pip install -e .
 
+      - name: Check Versions of Dependencies
+        run: pip freeze
+
       - name: Pytest with coverage
         run: coverage run --source=src/paste3 -m pytest
 

.github/workflows/build.yml → .github/workflows/test_unpinned_deps.yml

@@ -13,7 +13,7 @@ jobs:
     strategy:
       fail-fast: false
       matrix:
-        os: [macos-latest, ubuntu-latest]
+        os: [macos-latest, ubuntu-latest, windows-latest]
         python-version: ["3.12"]
 
     name: Build wheel on ${{ matrix.os }}
@@ -38,6 +38,9 @@ jobs:
       - name: Install Developer Dependencies
         run: pip install .[dev]
 
+      - name: Check Versions of Dependencies
+        run: pip freeze
+
       - name: Pytest
         run: pytest
 

requirements.txt

@@ -1,21 +1,21 @@
 anndata==0.10.8
 scanpy==1.10.2
-POT
-numpy
-scipy
+POT==0.9.4
+numpy==1.26.4
+scipy==1.14.1
 scikit-learn==1.5.1
-IPython>=7.18.1
-pytest
-seaborn
-matplotlib
-pandas
+IPython==8.27.0
+pytest==8.3.2
+seaborn==0.13.2
+matplotlib==3.9.2
+pandas==2.2.2
 statsmodels==0.14.2
-networkx
-sphinx
-myst-parser
-sphinx-autodoc-typehints
-nbsphinx
-sphinx-gallery
-sphinx-rtd-theme
-coverage
-coveralls
+networkx==3.3
+sphinx==7.4.7
+myst-parser==4.0.0
+sphinx-autodoc-typehints==2.2.3
+nbsphinx==0.9.5
+sphinx-gallery==0.17.1
+sphinx-rtd-theme==2.0.0
+coverage==7.6.1
+coveralls==4.0.1