diff --git a/docs/source/notebooks/paste2_tutorial.ipynb b/docs/source/notebooks/paste2_tutorial.ipynb index a4a95a4..edf232a 100644 --- a/docs/source/notebooks/paste2_tutorial.ipynb +++ b/docs/source/notebooks/paste2_tutorial.ipynb @@ -11,8 +11,7 @@ "import matplotlib.pyplot as plt\n", "import numpy as np\n", "import scanpy as sc\n", - "import seaborn as sns\n", - "import squidpy as sq" + "import seaborn as sns" ] }, { @@ -133,18 +132,10 @@ "metadata": {}, "outputs": [], "source": [ - "sq.pl.spatial_scatter(\n", - " sliceA, frameon=False, shape=None, color=\"layer_guess_reordered\", figsize=(10, 10)\n", - ")\n", - "sq.pl.spatial_scatter(\n", - " sliceB, frameon=False, shape=None, color=\"layer_guess_reordered\", figsize=(10, 10)\n", - ")\n", - "sq.pl.spatial_scatter(\n", - " sliceC, frameon=False, shape=None, color=\"layer_guess_reordered\", figsize=(10, 10)\n", - ")\n", - "sq.pl.spatial_scatter(\n", - " sliceD, frameon=False, shape=None, color=\"layer_guess_reordered\", figsize=(10, 10)\n", - ")" + "sc.pl.spatial(sliceA, color=\"layer_guess_reordered\", spot_size=100, frameon=False)\n", + "sc.pl.spatial(sliceB, color=\"layer_guess_reordered\", spot_size=100, frameon=False)\n", + "sc.pl.spatial(sliceC, color=\"layer_guess_reordered\", spot_size=100, frameon=False)\n", + "sc.pl.spatial(sliceD, color=\"layer_guess_reordered\", spot_size=100, frameon=False)" ] }, { diff --git a/pyproject.toml b/pyproject.toml index 4cb3a9b..f815140 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -59,7 +59,6 @@ docs = [ "sphinx-autodoc-annotation", "jupyterlab", "plotly", - "squidpy" ] [project.entry-points."napari.manifest"]