README.rmd

---
title: "READ me"
output: github_document
---

```{r setup, include=FALSE}
knitr::opts_chunk$set(echo = TRUE)
```

# Introduction to `rEDM`: Empirical Dynamics Modeling in R: a crash course

This is a 3 hour-Workshop on EDM and one application to real data in the Congreso Paulo Leal Ferreira organized by the students of the Instituto de Física Teórica - IFT (UNESP)

## Slides to the Workshop on Time series analysis by a causation criteria:
  * Day 1: Takens Theorem and its consequences
  * Day 2: Simplex projection
  * Day 3: Real data, real problems
  
--------------------------------

This is a series of tutorials for the  [School on Physics Applications in Biology](http://www.ictp-saifr.org/?page_id=15616) of 2018, created by Brenno Cabella, Paulo Inácio Prado, Renato Mendes Coutinho, Marina Rillo, Rafael Lopes and Roberto Kraenkel.

## 0. [Installation instructions](install.md)

## 1. [A Quick Tour through State Space Reconstruction](Hands-on_Takens.html)
  * *on Mathbio* Download [the notebook](https://raw.githubusercontent.com/mathbio/edmTutorials/master/takens/Hands-on%20Takens.Rmd) or the [R file](https://raw.githubusercontent.com/mathbio/edmTutorials/master/takens/Hands-on%20Takens.R).
  * *Here* Download [the notebook](https://raw.githubusercontent.com/rafalopespx/master/edmTutorials/docs/takens/Hands-on%20Takens.Rmd) or the [R file](https://raw.githubusercontent.com/rafalopespx/master/edmTutorials/docs/takens/Hands-on%20Takens.R).

## 2. [Simplex projection made simple](simplex.html)
  * *on Mathbio* Download [the notebook](https://raw.githubusercontent.com/mathbio/edmTutorials/master/simplex/simplex.Rmd) or the [R file](https://raw.githubusercontent.com/mathbio/edmTutorials/master/simplex/simplex.R).
  * *Here* Download [the notebook](https://raw.githubusercontent.com/rafalopespx/master/edmTutorials/docs/simplex/simplex.Rmd) or the [R file](https://raw.githubusercontent.com/mathbio/edmTutorials/master/simplex/simplex.R).

## 3. [Convergent cross-mapping (CCM)](ccm.html)
  * *on Mathbio* Download [the notebook](https://raw.githubusercontent.com/mathbio/edmTutorials/master/ccm/ccm.Rmd) or the [R file](https://raw.githubusercontent.com/mathbio/edmTutorials/master/ccm/ccm.R).
  * *Here* Download [the notebook](https://raw.githubusercontent.com/mathbio/rafalopespx/master/edmTutorials/docs/ccm/ccm.Rmd) or the [R file](https://raw.githubusercontent.com/mathbio/rafalopespx/master/edmTutorials/docs/ccm/ccm.R).

## 4. [Readings and resources](reading_and_resources.html)