diff --git a/NEWS.md b/NEWS.md index 97f2d75..3ceb63f 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,7 +1,6 @@ # evaluate (development version) * New `trim_intermediate_plots()` drops intermediate plots to reveal the complete/final plot (#206). -* evaluation "chunks" now provide a function-like scope. This means that `on.exit()` will now run at the end of the evaluate code, rather than immediately and `return()` will cause the evaluation to finish (#201). * The default `value` handler now evaluates print in a child environment of the evaluation environment. This largely makes evaluate easier to test, but should make defining S3 methods for print a little easier (#192). * `parse_all()` adds a `\n` to the end of every line, even the last one if it didn't have one in the input. * Setting `ACTIONS_STEP_DEBUG=1` (as in a failing GHA workflow) will automatically set `log_echo` and `log_warning` to `TRUE` (#175). diff --git a/R/conditions.R b/R/conditions.R index 00e5b63..9825553 100644 --- a/R/conditions.R +++ b/R/conditions.R @@ -51,10 +51,7 @@ with_handlers <- function(code, handlers) { } sanitize_call <- function(cnd) { - if (identical(cnd$call, quote(withVisible(do)))) { - cnd$call <- NULL - } - if (identical(cnd$call, quote(eval(as.call(list(context)), envir)))) { + if (identical(cnd$call, quote(eval(expr, envir)))) { cnd$call <- NULL } diff --git a/R/evaluate.R b/R/evaluate.R index 6f1f8d5..a424640 100644 --- a/R/evaluate.R +++ b/R/evaluate.R @@ -132,48 +132,34 @@ evaluate <- function(input, # The user's condition handlers have priority over ours handlers <- c(user_handlers, evaluate_handlers) - context <- function() { - do <- NULL # silence R CMD check note - - for (tle in tles) { - watcher$push_source(tle$src, tle$exprs) - if (debug || log_echo) { - cat_line(tle$src, file = stderr()) - } - - continue <- withRestarts( - with_handlers( - { - for (expr in tle$exprs) { - # Using `delayedAssign()` as an interface to the C-level function - # `Rf_eval()`. Unlike the R-level `eval()`, this doesn't create - # an unwinding scope. - eval(bquote(delayedAssign("do", .(expr), eval.env = envir))) - - ev <- withVisible(do) - watcher$capture_plot_and_output() - watcher$print_value(ev$value, ev$visible, envir) - } - TRUE - }, - handlers - ), - eval_continue = function() TRUE, - eval_stop = function() FALSE, - eval_error = function(cnd) stop(cnd) - ) - watcher$check_devices() - - if (!continue) { - break - } + for (tle in tles) { + watcher$push_source(tle$src, tle$exprs) + if (debug || log_echo) { + cat_line(tle$src, file = stderr()) } - } - # Here we use `eval()` to create an unwinding scope for `envir`. - # We call ourselves back immediately once the scope is created. - eval(as.call(list(context)), envir) - watcher$capture_output() + continue <- withRestarts( + with_handlers( + { + for (expr in tle$exprs) { + ev <- withVisible(eval(expr, envir)) + watcher$capture_plot_and_output() + watcher$print_value(ev$value, ev$visible, envir) + } + TRUE + }, + handlers + ), + eval_continue = function() TRUE, + eval_stop = function() FALSE, + eval_error = function(cnd) signalCondition(cnd) + ) + watcher$check_devices() + + if (!continue) { + break + } + } # Always capture last plot, even if incomplete watcher$capture_plot(TRUE) diff --git a/revdep/README.md b/revdep/README.md index c53c171..f175d11 100644 --- a/revdep/README.md +++ b/revdep/README.md @@ -1,200 +1,243 @@ # Revdeps -## Failed to check (172) +## Failed to check (213) -|package |version |error |warning |note | -|:----------------------|:----------|:-----|:-------|:----| -|ANOM |0.5 |1 | | | -|apollo |0.3.3 |1 | | | -|arealDB |0.6.3 |1 | | | -|assessor |1.1.0 |1 | | | -|AutoScore |1.0.0 |1 | | | -|base.rms |1.0 |1 | | | -|bayesCT |0.99.3 |1 | | | -|bayesdfa |1.3.3 |1 | | | -|bayesDP |1.3.6 |1 | | | -|BayesESS |0.1.19 |1 | | | -|BayesFactor |0.9.12-4.7 |1 | | | -|BayesSurvive |0.0.2 |1 | | | -|bbknnR |1.1.1 |1 | | | -|bbmix |1.0.0 |1 | | | -|BCClong |1.0.3 |1 | | | -|BFpack |1.3.0 |1 | | | -|BGGM |2.1.3 |1 | | | -|biosensors.usc |1.0 |1 | | | -|bmstdr |0.7.9 |1 | | | -|bndovb |1.1 |1 | | | -|CACIMAR |1.0.0 |1 | | | -|CalibrationCurves |2.0.3 |1 | | | -|caROC |0.1.5 |1 | | | -|CaseBasedReasoning |0.3 |1 | | | -|CGPfunctions |0.6.3 |1 | | | -|chipPCR |1.0-2 |1 | | | -|cmprskcoxmsm |0.2.1 |1 | | | -|coarseDataTools |0.6-6 |1 | | | -|COMBO |1.1.0 |1 | | | -|ConnectednessApproach |1.0.3 |1 | | | -|contrast |0.24.2 |1 | | | -|cotram |0.4-4 |1 | | | -|countSTAR |1.0.2 |1 | | | -|coxed |0.3.3 |1 | | | -|CSCNet |0.1.2 |1 | | | -|csmpv |1.0.3 |1 | | | -|ctsem |3.10.0 |1 | | | -|cwbtools |0.4.2 |1 | | | -|dataone |2.2.2 |1 | | | -|datapack |1.4.1 |1 | | | -|deeptrafo |0.1-1 |1 | | | -|diveMove |1.6.2 |1 | | | -|DR.SC |3.4 |1 | | | -|drtmle |1.1.2 |1 | | | -|ecolottery |1.0.0 |1 | | | -|EdSurvey |4.0.7 |1 | | | -|EpiEstim |2.2-4 |1 | | | -|erah |2.0.1 |1 | | | -|EWSmethods |? | | | | -|FAIRmaterials |0.4.2.1 |1 | | | -|FoReco |0.2.6 |1 | | | -|FREEtree |0.1.0 |1 | | | -|GeneNMF |0.4.0 |1 | | | -|geomorph |? | | | | -|gfilmm |2.0.5 |1 | | | -|gfilogisreg |1.0.3 |1 | | | -|ggrcs |0.4.0 |1 | | | -|gJLS2 |0.2.0 |1 | | | -|gllvm |1.4.3 |1 | | | -|gmoTree |? | | | | -|gpuR |2.0.6 |1 | | | -|Greg |2.0.2 |1 | | | -|hettx |0.1.3 |1 | | | -|hIRT |0.3.0 |1 | | | -|interactionRCS |0.1.1 |1 | | | -|iNZightPlots |2.15.3 |1 | | | -|IRexamples |0.0.4 |1 | | | -|isodistrreg |0.1.0 |1 | | | -|joineRML |0.4.6 |1 | | | -|JWileymisc |1.4.1 |1 | | | -|L2E |2.0 |1 | | | -|lchemix |0.1.0 |1 | | | -|loon.shiny |? | | | | -|loon.tourr |? | | | | -|LorenzRegression |1.0.0 |1 | | | -|lsirm12pl |1.3.1 |1 | | | -|MBmca |1.0.1-3 |1 | | | -|mbsts |3.0 |1 | | | -|MendelianRandomization |0.10.0 |1 | | | -|MetabolicSurv |1.1.2 |1 | | | -|metajam |0.3.0 |1 | | | -|mHMMbayes |1.1.0 |1 | | | -|miceafter |0.5.0 |1 | | | -|MiRKAT |1.2.3 |1 | | | -|miWQS |0.4.4 |1 | | | -|mlt.docreg |1.1-8 |1 | | | -|modeLLtest |1.0.4 |1 | | | -|MRZero |0.2.0 |1 | | | -|MultiKink |0.2.0 |1 | | | -|multilevelTools |0.1.1 |1 | | | -|multinma |0.7.1 |1 | | | -|mvDFA |0.0.4 |1 | | | -|MXM |1.5.5 |1 | | | -|nebula |1.5.3 |1 | | | -|NetworkChange |0.8 |1 | | | -|newIMVC |0.1.0 |1 | | | -|nlpred |1.0.1 |1 | | | -|noncomplyR |1.0 |1 | | | -|ontologics |0.7.0 |1 | | | -|OVtool |1.0.3 |1 | | | -|paths |0.1.1 |1 | | | -|pencal |? | | | | -|pez |1.2-4 |1 | | | -|piecewiseSEM |? | | | | -|pould |1.0.1 |1 | | | -|pre |1.0.7 |1 | | | -|ProFAST |? | | | | -|PRSPGx |0.3.0 |1 | | | -|psbcSpeedUp |2.0.7 |1 | | | -|pscore |0.4.0 |1 | | | -|psfmi |1.4.0 |1 | | | -|pssmooth |1.0.3 |1 | | | -|ptmixed |? | | | | -|QHScrnomo |3.0.1 |1 | | | -|qreport |1.0-1 |1 | | | -|qte |1.3.1 |1 | | | -|Qtools |1.5.9 |1 | | | -|QuantileGH |? | | | | -|quantregGrowth |1.7-1 |1 | | | -|quid |0.0.1 |1 | | | -|RATest |0.1.10 |1 | | | -|rddtools |1.6.0 |1 | | | -|rdflib |0.2.8 |1 | | | -|redland |1.0.17-18 |1 | | | -|rms |6.8-1 |1 | |1 | -|rmsb |1.1-1 |1 | | | -|robmed |1.0.2 |1 | | | -|RPPASPACE |1.0.10 |1 | | | -|RQdeltaCT |1.3.0 |1 | | | -|rqPen |4.1.1 |1 | | | -|RRPP |? | | | | -|rstanarm |2.32.1 |1 | | | -|scAnnotate |0.3 |1 | | | -|scaper |0.1.0 |1 | | | -|scCustomize |2.1.2 |1 | |1 | -|SCdeconR |1.0.0 |1 | | | -|scGate |1.6.2 |1 | | | -|scGOclust |0.2.1 |1 | | | -|SCIntRuler |0.99.6 |1 | | | -|scMappR |1.0.11 |1 | | | -|SCRIP |1.0.0 |1 | | | -|SeBR |1.0.0 |1 | | | -|semicmprskcoxmsm |0.2.0 |1 | | | -|SGP |2.1-0.0 |1 | | | -|shinyTempSignal |0.0.8 |1 | | | -|shrink |1.2.3 |1 | | | -|SimplyAgree |0.2.0 |1 | | | -|sizeMat |1.1.2 |1 | | | -|SNPassoc |2.1-0 |1 | | | -|snplinkage |? | | | | -|sorocs |0.1.0 |1 | | | -|SortedEffects |1.7.0 |1 | | | -|SoupX |1.6.2 |1 | | | -|spikeSlabGAM |1.1-19 |1 | | | -|stats4teaching |? | | | | -|statsr |0.3.0 |1 | | | -|stR |0.6 |1 | | | -|STREAK |1.0.0 |1 | | | -|streamDAG |? | | | | -|tidyseurat |0.8.0 |1 | | | -|tidyvpc |1.5.1 |1 | | | -|tram |1.0-4 |1 | | | -|tramnet |0.0-8 |1 | | | -|tramvs |0.0-4 |1 | |1 | -|TriDimRegression |1.0.2 |1 | | | -|TSrepr |1.1.0 |1 | | | -|twang |2.6 |1 | | | -|vdg |1.2.3 |1 | | | -|visa |0.1.0 |1 | | | -|WRTDStidal |1.1.4 |1 | | | -|yarrr |0.1.5 |1 | | | -|zen4R |0.10 |1 | | | +|package |version |error |warning |note | +|:-----------------------|:----------|:-----|:-------|:----| +|adjclust |? | | | | +|ANOM |0.5 |1 | | | +|apollo |0.3.3 |1 | | | +|arealDB |0.6.3 |1 | | | +|assessor |1.1.0 |1 | | | +|AutoScore |1.0.0 |1 | | | +|baRulho |? | | | | +|bayesCT |0.99.3 |1 | | | +|bayesDP |1.3.6 |1 | | | +|BayesESS |0.1.19 |1 | | | +|BayesFactor |0.9.12-4.7 |1 | | | +|BayesSurvive |0.0.2 |1 | | | +|bbknnR |1.1.1 |1 | | | +|bbmix |1.0.0 |1 | | | +|BCClong |1.0.3 |1 | | | +|BFpack |1.3.0 |1 | | | +|BGGM |2.1.3 |1 | | | +|biosensors.usc |1.0 |1 | | | +|bmstdr |0.7.9 |1 | | | +|bndovb |1.1 |1 | | | +|bsub |1.1.0 |1 | | | +|CACIMAR |1.0.0 |1 | | | +|caROC |0.1.5 |1 | | | +|CGPfunctions |0.6.3 |1 | | | +|chemodiv |? | | | | +|chicane |? | | | | +|chipPCR |1.0-2 |1 | | | +|cinaR |? | | | | +|cmprskcoxmsm |0.2.1 |1 | | | +|CNVScope |? | | | | +|coarseDataTools |0.6-6 |1 | | | +|COMBO |1.1.0 |1 | | | +|COMMA |1.0.0 |1 | | | +|ConnectednessApproach |1.0.3 |1 | | | +|conos |? | | | | +|cotram |? | | | | +|countSTAR |1.0.2 |1 | | | +|crosstalkr |? | | | | +|CSCNet |0.1.2 |1 | | | +|ctsem |3.10.1 |1 | | | +|dataone |2.2.2 |1 | | | +|datapack |1.4.1 |1 | | | +|deeptrafo |? | | | | +|diveMove |1.6.2 |1 | | | +|do |2.0.0.0 |1 | | | +|DR.SC |3.4 |1 | | | +|driveR |? | | | | +|drtmle |1.1.2 |1 | | | +|DrugSim2DR |? | | | | +|DRviaSPCN |? | | | | +|ech |0.1.3 |1 | | | +|EcoEnsemble |1.1.0 |1 | | | +|ecolottery |1.0.0 |1 | | | +|EdSurvey |4.0.7 |1 | | | +|EpiEstim |2.2-4 |1 | | | +|erah |2.0.1 |1 | | | +|EWSmethods |? | | | | +|FAIRmaterials |0.4.2.1 |1 | | | +|FREEtree |0.1.0 |1 | | | +|GALLO |? | | | | +|gap |? | | | | +|geneHapR |? | | | | +|GeneNMF |0.6.0 |1 | | | +|GeneSelectR |? | | | | +|geomorph |? | | | | +|gJLS2 |0.2.0 |1 | | | +|gllvm |1.4.3 |1 | | | +|gmoTree |? | | | | +|gpuR |2.0.6 |1 | | | +|hettx |0.1.3 |1 | | | +|Hmisc |? | | | | +|iClusterVB |0.1.2 |1 | | | +|iNZightPlots |2.15.3 |1 | | | +|IRexamples |0.0.4 |1 | | | +|isodistrreg |0.1.0 |1 | | | +|joineRML |0.4.6 |1 | | | +|kdml |1.0.0 |1 | | | +|kibior |? | | | | +|kstMatrix |? | | | | +|L2E |2.0 |1 | | | +|lchemix |0.1.0 |1 | | | +|ldsep |? | | | | +|locuszoomr |? | | | | +|loon.shiny |? | | | | +|loon.tourr |? | | | | +|LorenzRegression |1.0.0 |1 | | | +|lsirm12pl |1.3.3 |1 | | | +|MAAPER |? | | | | +|marlod |0.1.1 |1 | | | +|MARVEL |? | | | | +|MBmca |1.0.1-3 |1 | | | +|mbsts |3.0 |1 | | | +|Mega2R |? | | | | +|metajam |0.3.1 |1 | | | +|mHMMbayes |1.1.0 |1 | | | +|MicroSEC |? | | | | +|MiRKAT |1.2.3 |1 | | | +|MitoHEAR |? | | | | +|miWQS |0.4.4 |1 | | | +|MLML2R |? | | | | +|mlt.docreg |? | | | | +|MOCHA |? | | | | +|modeLLtest |1.0.4 |1 | | | +|MRZero |0.2.0 |1 | | | +|MultiKink |0.2.0 |1 | | | +|multilevelTools |0.1.1 |1 | | | +|multinma |0.7.1 |1 | | | +|mvDFA |0.0.4 |1 | | | +|MXM |1.5.5 |1 | | | +|nebula |1.5.3 |1 | | | +|NetworkChange |0.8 |1 | | | +|newIMVC |0.1.0 |1 | | | +|nlpred |1.0.1 |1 | | | +|noncomplyR |1.0 |1 | | | +|ohun |? | | | | +|oncoPredict |? | | | | +|ontologics |0.7.0 |1 | | | +|OVtool |1.0.3 |1 | | | +|pagoda2 |? | | | | +|PAMpal |1.2.1 |1 | | | +|paths |0.1.1 |1 | | | +|PathwaySpace |? | | | | +|pencal |? | | | | +|pez |1.2-4 |1 | | | +|piecewiseSEM |? | | | | +|polyRAD |? | | | | +|pould |1.0.1 |1 | | | +|pre |1.0.7 |1 | | | +|ProFAST |? | | | | +|PRSPGx |0.3.0 |1 | | | +|psbcSpeedUp |2.0.7 |1 | | | +|pscore |0.4.0 |1 | | | +|pssmooth |1.0.3 |1 | | | +|ptmixed |? | | | | +|qte |1.3.1 |1 | | | +|Qtools |1.5.9 |1 | | | +|QuantileGH |? | | | | +|quantilogram |3.1.1 |1 | | | +|quantregGrowth |1.7-1 |1 | | | +|quid |0.0.1 |1 | | | +|RATest |0.1.10 |1 | | | +|rddtools |1.6.0 |1 | | | +|rdflib |0.2.9 |1 | | | +|redland |1.0.17-18 |1 | | | +|revert |? | | | | +|RFLPtools |? | | | | +|Rgff |? | | | | +|RGraphSpace |? | | | | +|rms |? | | | | +|RNAseqQC |? | | | | +|robmed |1.0.2 |1 | | | +|RPPASPACE |1.0.10 |1 | | | +|RQdeltaCT |1.3.0 |1 | | | +|rqPen |4.1.1 |1 | | | +|Rraven |? | | | | +|RRPP |? | | | | +|rsolr |? | | | | +|rstanarm |2.32.1 |1 | | | +|RTIGER |? | | | | +|rTwig |1.1.0 |1 | | | +|RVA |? | | | | +|scAnnotate |0.3 |1 | | | +|scaper |0.1.0 |1 | | | +|scCustomize |? | | | | +|SCdeconR |1.0.0 |1 | | | +|scGate |1.6.2 |1 | | | +|scGOclust |0.2.1 |1 | | | +|SCIntRuler |0.99.6 |1 | | | +|scITD |? | | | | +|scMappR |1.0.11 |1 | | | +|SCRIP |1.0.0 |1 | | | +|SeBR |1.0.0 |1 | | | +|SeedMatchR |? | | | | +|semicmprskcoxmsm |0.2.0 |1 | | | +|SGP |2.1-0.0 |1 | | | +|shinyTempSignal |0.0.8 |1 | | | +|sigminer |? | | | | +|SimplyAgree |0.2.0 |1 | | | +|sizeMat |1.1.2 |1 | | | +|SNPassoc |? | | | | +|snplinkage |? | | | | +|sorocs |0.1.0 |1 | | | +|SortedEffects |1.7.0 |1 | | | +|SoupX |1.6.2 |1 | | | +|SpatialDDLS |? | | | | +|speakeasyR |? | | | | +|spikeSlabGAM |1.1-19 |1 | | | +|stats4teaching |? | | | | +|statsr |0.3.0 |1 | | | +|stR |0.7 |1 | | | +|STREAK |1.0.0 |1 | | | +|streamDAG |? | | | | +|SubtypeDrug |? | | | | +|tbm |? | | | | +|TH.data |? | | | | +|tidyseurat |0.8.0 |1 | | | +|tidyvpc |1.5.1 |1 | | | +|tram |? | | | | +|tramME |? | | | | +|tramnet |? | | | | +|tramvs |? | | | | +|TriDimRegression |1.0.2 |1 | | | +|TSrepr |1.1.0 |1 | | | +|twang |2.6.1 |1 | | | +|TwitterAutomatedTrading |0.1.0 |1 | | | +|updog |? | | | | +|valr |? | | | | +|vdg |1.2.3 |1 | | | +|visa |0.1.0 |1 | | | +|WRTDStidal |1.1.4 |1 | | | +|xnet |? | | | | +|yarrr |0.1.5 |1 | | | +|zen4R |0.10 |1 | | | -## New problems (16) +## New problems (18) |package |version |error |warning |note | |:-------------|:-------|:------|:-------|:--------| |[babelmixr2](problems.md#babelmixr2)|0.1.2 | | |1 __+1__ | -|[CGGP](problems.md#cggp)|1.0.4 |__+1__ | | | -|[circhelp](problems.md#circhelp)|1.1 |__+1__ | | | +|[BeeGUTS](problems.md#beeguts)|1.1.3 | | |2 __+1__ | |[coro](problems.md#coro)|1.0.4 |__+1__ | | | -|[Haplin](problems.md#haplin)|7.3.1 | | |__+1__ | +|[etwfe](problems.md#etwfe)|0.4.0 | | |__+1__ | +|[fauxpas](problems.md#fauxpas)|0.5.2 | | |__+1__ | |[multiverse](problems.md#multiverse)|0.6.1 |1 | |__+1__ | |[OptimModel](problems.md#optimmodel)|2.0-1 | | |__+1__ | -|[polmineR](problems.md#polminer)|0.8.9 | | |__+1__ | +|[ordinalbayes](problems.md#ordinalbayes)|0.1.1 | | |1 __+1__ | |[PopED](problems.md#poped)|0.6.0 |1 | |1 __+1__ | -|[PubChemR](problems.md#pubchemr)|2.0 |__+2__ | | | -|[refer](problems.md#refer)|0.1.0 | | |__+1__ | +|[posologyr](problems.md#posologyr)|1.2.6 | | |__+1__ | +|[rgho](problems.md#rgho)|3.0.2 |__+1__ | | | +|[rTensor2](problems.md#rtensor2)|2.0.0 | | |__+1__ | |[rxode2](problems.md#rxode2)|2.1.3 |__+1__ | |1 | |[spathial](problems.md#spathial)|0.1.2 | | |2 __+1__ | |[trampoline](problems.md#trampoline)|0.1.1 |1 | |__+1__ | +|[treesliceR](problems.md#treeslicer)|1.0.2 |__+1__ | | | |[WindCurves](problems.md#windcurves)|0.2 | | |__+1__ | |[wordpredictor](problems.md#wordpredictor)|0.0.3 |1 | |__+1__ | diff --git a/revdep/cran.md b/revdep/cran.md index 73056ac..d7e5202 100644 --- a/revdep/cran.md +++ b/revdep/cran.md @@ -1,9 +1,9 @@ ## revdepcheck results -We checked 8733 reverse dependencies (8727 from CRAN + 6 from Bioconductor), comparing R CMD check results across CRAN and dev versions of this package. +We checked 8826 reverse dependencies (8816 from CRAN + 10 from Bioconductor), comparing R CMD check results across CRAN and dev versions of this package. - * We saw 16 new problems - * We failed to check 166 packages + * We saw 18 new problems + * We failed to check 203 packages Issues with CRAN packages are summarised below. @@ -13,16 +13,16 @@ Issues with CRAN packages are summarised below. * babelmixr2 checking re-building of vignette outputs ... NOTE -* CGGP - checking tests ... ERROR - -* circhelp - checking tests ... ERROR +* BeeGUTS + checking re-building of vignette outputs ... NOTE * coro checking tests ... ERROR -* Haplin +* etwfe + checking re-building of vignette outputs ... NOTE + +* fauxpas checking installed package size ... NOTE * multiverse @@ -31,18 +31,20 @@ Issues with CRAN packages are summarised below. * OptimModel checking re-building of vignette outputs ... NOTE -* polmineR +* ordinalbayes checking installed package size ... NOTE * PopED checking re-building of vignette outputs ... NOTE -* PubChemR +* posologyr + checking re-building of vignette outputs ... NOTE + +* rgho checking tests ... ERROR - checking running R code from vignettes ... ERROR -* refer - checking re-building of vignette outputs ... NOTE +* rTensor2 + checking installed package size ... NOTE * rxode2 checking re-building of vignette outputs ... ERROR @@ -53,6 +55,9 @@ Issues with CRAN packages are summarised below. * trampoline checking re-building of vignette outputs ... NOTE +* treesliceR + checking tests ... ERROR + * WindCurves checking re-building of vignette outputs ... NOTE @@ -61,169 +66,206 @@ Issues with CRAN packages are summarised below. ### Failed to check -* ANOM (NA) -* apollo (NA) -* arealDB (NA) -* assessor (NA) -* AutoScore (NA) -* base.rms (NA) -* bayesCT (NA) -* bayesdfa (NA) -* bayesDP (NA) -* BayesESS (NA) -* BayesFactor (NA) -* BayesSurvive (NA) -* bbknnR (NA) -* bbmix (NA) -* BCClong (NA) -* BFpack (NA) -* BGGM (NA) -* biosensors.usc (NA) -* bmstdr (NA) -* bndovb (NA) -* CACIMAR (NA) -* CalibrationCurves (NA) -* caROC (NA) -* CaseBasedReasoning (NA) -* CGPfunctions (NA) -* chipPCR (NA) -* cmprskcoxmsm (NA) -* coarseDataTools (NA) -* COMBO (NA) -* ConnectednessApproach (NA) -* contrast (NA) -* cotram (NA) -* countSTAR (NA) -* coxed (NA) -* CSCNet (NA) -* csmpv (NA) -* ctsem (NA) -* cwbtools (NA) -* dataone (NA) -* datapack (NA) -* deeptrafo (NA) -* diveMove (NA) -* DR.SC (NA) -* drtmle (NA) -* ecolottery (NA) -* EdSurvey (NA) -* EpiEstim (NA) -* erah (NA) -* FAIRmaterials (NA) -* FoReco (NA) -* FREEtree (NA) -* GeneNMF (NA) -* gfilmm (NA) -* gfilogisreg (NA) -* ggrcs (NA) -* gJLS2 (NA) -* gllvm (NA) -* gpuR (NA) -* Greg (NA) -* hettx (NA) -* hIRT (NA) -* interactionRCS (NA) -* iNZightPlots (NA) -* IRexamples (NA) -* isodistrreg (NA) -* joineRML (NA) -* JWileymisc (NA) -* L2E (NA) -* lchemix (NA) -* loon.shiny (NA) -* loon.tourr (NA) -* LorenzRegression (NA) -* lsirm12pl (NA) -* MBmca (NA) -* mbsts (NA) -* MendelianRandomization (NA) -* MetabolicSurv (NA) -* metajam (NA) -* mHMMbayes (NA) -* miceafter (NA) -* MiRKAT (NA) -* miWQS (NA) -* mlt.docreg (NA) -* modeLLtest (NA) -* MRZero (NA) -* MultiKink (NA) -* multilevelTools (NA) -* multinma (NA) -* mvDFA (NA) -* MXM (NA) -* nebula (NA) -* NetworkChange (NA) -* newIMVC (NA) -* nlpred (NA) -* noncomplyR (NA) -* ontologics (NA) -* OVtool (NA) -* paths (NA) -* pencal (NA) -* pez (NA) -* pould (NA) -* pre (NA) -* ProFAST (NA) -* PRSPGx (NA) -* psbcSpeedUp (NA) -* pscore (NA) -* psfmi (NA) -* pssmooth (NA) -* ptmixed (NA) -* QHScrnomo (NA) -* qreport (NA) -* qte (NA) -* Qtools (NA) -* quantregGrowth (NA) -* quid (NA) -* RATest (NA) -* rddtools (NA) -* rdflib (NA) -* redland (NA) -* rms (NA) -* rmsb (NA) -* robmed (NA) -* RPPASPACE (NA) -* RQdeltaCT (NA) -* rqPen (NA) -* rstanarm (NA) -* scAnnotate (NA) -* scaper (NA) -* scCustomize (NA) -* SCdeconR (NA) -* scGate (NA) -* scGOclust (NA) -* SCIntRuler (NA) -* scMappR (NA) -* SCRIP (NA) -* SeBR (NA) -* semicmprskcoxmsm (NA) -* SGP (NA) -* shinyTempSignal (NA) -* shrink (NA) -* SimplyAgree (NA) -* sizeMat (NA) -* SNPassoc (NA) -* snplinkage (NA) -* sorocs (NA) -* SortedEffects (NA) -* SoupX (NA) -* spikeSlabGAM (NA) -* stats4teaching (NA) -* statsr (NA) -* stR (NA) -* STREAK (NA) -* streamDAG (NA) -* tidyseurat (NA) -* tidyvpc (NA) -* tram (NA) -* tramnet (NA) -* tramvs (NA) -* TriDimRegression (NA) -* TSrepr (NA) -* twang (NA) -* vdg (NA) -* visa (NA) -* WRTDStidal (NA) -* yarrr (NA) -* zen4R (NA) +* adjclust (NA) +* ANOM (NA) +* apollo (NA) +* arealDB (NA) +* assessor (NA) +* AutoScore (NA) +* baRulho (NA) +* bayesCT (NA) +* bayesDP (NA) +* BayesESS (NA) +* BayesFactor (NA) +* BayesSurvive (NA) +* bbknnR (NA) +* bbmix (NA) +* BCClong (NA) +* BFpack (NA) +* BGGM (NA) +* biosensors.usc (NA) +* bmstdr (NA) +* bndovb (NA) +* bsub (NA) +* CACIMAR (NA) +* caROC (NA) +* CGPfunctions (NA) +* chemodiv (NA) +* chicane (NA) +* chipPCR (NA) +* cinaR (NA) +* cmprskcoxmsm (NA) +* CNVScope (NA) +* coarseDataTools (NA) +* COMBO (NA) +* COMMA (NA) +* ConnectednessApproach (NA) +* conos (NA) +* cotram (NA) +* countSTAR (NA) +* crosstalkr (NA) +* CSCNet (NA) +* ctsem (NA) +* dataone (NA) +* datapack (NA) +* deeptrafo (NA) +* diveMove (NA) +* do (NA) +* DR.SC (NA) +* driveR (NA) +* drtmle (NA) +* DrugSim2DR (NA) +* DRviaSPCN (NA) +* ech (NA) +* EcoEnsemble (NA) +* ecolottery (NA) +* EdSurvey (NA) +* EpiEstim (NA) +* erah (NA) +* FAIRmaterials (NA) +* FREEtree (NA) +* GALLO (NA) +* gap (NA) +* geneHapR (NA) +* GeneNMF (NA) +* GeneSelectR (NA) +* gJLS2 (NA) +* gllvm (NA) +* gpuR (NA) +* hettx (NA) +* Hmisc (NA) +* iClusterVB (NA) +* iNZightPlots (NA) +* IRexamples (NA) +* isodistrreg (NA) +* joineRML (NA) +* kdml (NA) +* kibior (NA) +* L2E (NA) +* lchemix (NA) +* ldsep (NA) +* locuszoomr (NA) +* loon.shiny (NA) +* loon.tourr (NA) +* LorenzRegression (NA) +* lsirm12pl (NA) +* MAAPER (NA) +* marlod (NA) +* MARVEL (NA) +* MBmca (NA) +* mbsts (NA) +* Mega2R (NA) +* metajam (NA) +* mHMMbayes (NA) +* MicroSEC (NA) +* MiRKAT (NA) +* MitoHEAR (NA) +* miWQS (NA) +* MLML2R (NA) +* mlt.docreg (NA) +* MOCHA (NA) +* modeLLtest (NA) +* MRZero (NA) +* MultiKink (NA) +* multilevelTools (NA) +* multinma (NA) +* mvDFA (NA) +* MXM (NA) +* nebula (NA) +* NetworkChange (NA) +* newIMVC (NA) +* nlpred (NA) +* noncomplyR (NA) +* ohun (NA) +* oncoPredict (NA) +* ontologics (NA) +* OVtool (NA) +* pagoda2 (NA) +* PAMpal (NA) +* paths (NA) +* pencal (NA) +* pez (NA) +* polyRAD (NA) +* pould (NA) +* pre (NA) +* ProFAST (NA) +* PRSPGx (NA) +* psbcSpeedUp (NA) +* pscore (NA) +* pssmooth (NA) +* ptmixed (NA) +* qte (NA) +* Qtools (NA) +* quantilogram (NA) +* quantregGrowth (NA) +* quid (NA) +* RATest (NA) +* rddtools (NA) +* rdflib (NA) +* redland (NA) +* revert (NA) +* RFLPtools (NA) +* Rgff (NA) +* RNAseqQC (NA) +* robmed (NA) +* RPPASPACE (NA) +* RQdeltaCT (NA) +* rqPen (NA) +* Rraven (NA) +* rsolr (NA) +* rstanarm (NA) +* RTIGER (NA) +* rTwig (NA) +* RVA (NA) +* scAnnotate (NA) +* scaper (NA) +* scCustomize (NA) +* SCdeconR (NA) +* scGate (NA) +* scGOclust (NA) +* SCIntRuler (NA) +* scITD (NA) +* scMappR (NA) +* SCRIP (NA) +* SeBR (NA) +* SeedMatchR (NA) +* semicmprskcoxmsm (NA) +* SGP (NA) +* shinyTempSignal (NA) +* sigminer (NA) +* SimplyAgree (NA) +* sizeMat (NA) +* SNPassoc (NA) +* snplinkage (NA) +* sorocs (NA) +* SortedEffects (NA) +* SoupX (NA) +* SpatialDDLS (NA) +* speakeasyR (NA) +* spikeSlabGAM (NA) +* stats4teaching (NA) +* statsr (NA) +* stR (NA) +* STREAK (NA) +* streamDAG (NA) +* SubtypeDrug (NA) +* tbm (NA) +* TH.data (NA) +* tidyseurat (NA) +* tidyvpc (NA) +* tram (NA) +* tramME (NA) +* tramnet (NA) +* tramvs (NA) +* TriDimRegression (NA) +* TSrepr (NA) +* twang (NA) +* TwitterAutomatedTrading (NA) +* updog (NA) +* valr (NA) +* vdg (NA) +* visa (NA) +* WRTDStidal (NA) +* xnet (NA) +* yarrr (NA) +* zen4R (NA) diff --git a/revdep/failures.md b/revdep/failures.md index c2e558c..d7c7821 100644 --- a/revdep/failures.md +++ b/revdep/failures.md @@ -1,3 +1,79 @@ +# adjclust + +
+ +* Version: 0.6.9 +* GitHub: https://github.com/pneuvial/adjclust +* Source code: https://github.com/cran/adjclust +* Date/Publication: 2024-02-08 08:50:05 UTC +* Number of recursive dependencies: 119 + +Run `revdepcheck::cloud_details(, "adjclust")` for more info + +
+ +## Error before installation + +### Devel + +``` +* using log directory ‘/tmp/workdir/adjclust/new/adjclust.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘adjclust/DESCRIPTION’ ... OK +... + When sourcing ‘hicClust.R’: +Error: there is no package called ‘HiTC’ +Execution halted + + ‘hicClust.Rmd’ using ‘UTF-8’... failed + ‘notesCHAC.Rmd’ using ‘UTF-8’... OK + ‘snpClust.Rmd’ using ‘UTF-8’... OK +* checking re-building of vignette outputs ... OK +* DONE +Status: 1 WARNING, 2 NOTEs + + + + + +``` +### CRAN + +``` +* using log directory ‘/tmp/workdir/adjclust/old/adjclust.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘adjclust/DESCRIPTION’ ... OK +... + When sourcing ‘hicClust.R’: +Error: there is no package called ‘HiTC’ +Execution halted + + ‘hicClust.Rmd’ using ‘UTF-8’... failed + ‘notesCHAC.Rmd’ using ‘UTF-8’... OK + ‘snpClust.Rmd’ using ‘UTF-8’... OK +* checking re-building of vignette outputs ... OK +* DONE +Status: 1 WARNING, 2 NOTEs + + + + + +``` # ANOM
@@ -300,8 +376,8 @@ Run `revdepcheck::cloud_details(, "AutoScore")` for more info ** inst ** byte-compile and prepare package for lazy loading Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace + there is no package called ‘rms’ +Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart Execution halted ERROR: lazy loading failed for package ‘AutoScore’ * removing ‘/tmp/workdir/AutoScore/new/AutoScore.Rcheck/AutoScore’ @@ -320,71 +396,87 @@ ERROR: lazy loading failed for package ‘AutoScore’ ** inst ** byte-compile and prepare package for lazy loading Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace + there is no package called ‘rms’ +Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart Execution halted ERROR: lazy loading failed for package ‘AutoScore’ * removing ‘/tmp/workdir/AutoScore/old/AutoScore.Rcheck/AutoScore’ ``` -# base.rms +# baRulho
-* Version: 1.0 -* GitHub: NA -* Source code: https://github.com/cran/base.rms -* Date/Publication: 2020-08-01 11:10:08 UTC -* Number of recursive dependencies: 110 +* Version: 2.1.2 +* GitHub: https://github.com/ropensci/baRulho +* Source code: https://github.com/cran/baRulho +* Date/Publication: 2024-08-31 13:10:07 UTC +* Number of recursive dependencies: 115 -Run `revdepcheck::cloud_details(, "base.rms")` for more info +Run `revdepcheck::cloud_details(, "baRulho")` for more info
-## In both - -* checking whether package ‘base.rms’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/base.rms/new/base.rms.Rcheck/00install.out’ for details. - ``` - -## Installation +## Error before installation ### Devel ``` -* installing *source* package ‘base.rms’ ... -** package ‘base.rms’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘base.rms’ -* removing ‘/tmp/workdir/base.rms/new/base.rms.Rcheck/base.rms’ +* using log directory ‘/tmp/workdir/baRulho/new/baRulho.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘baRulho/DESCRIPTION’ ... OK +... +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Packages required but not available: 'warbleR', 'ohun' + +Package suggested but not available for checking: ‘Rraven’ + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + ``` ### CRAN ``` -* installing *source* package ‘base.rms’ ... -** package ‘base.rms’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘base.rms’ -* removing ‘/tmp/workdir/base.rms/old/base.rms.Rcheck/base.rms’ +* using log directory ‘/tmp/workdir/baRulho/old/baRulho.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘baRulho/DESCRIPTION’ ... OK +... +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Packages required but not available: 'warbleR', 'ohun' + +Package suggested but not available for checking: ‘Rraven’ + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + ``` @@ -451,84 +543,6 @@ ERROR: lazy loading failed for package ‘bayesCT’ * removing ‘/tmp/workdir/bayesCT/old/bayesCT.Rcheck/bayesCT’ -``` -# bayesdfa - -
- -* Version: 1.3.3 -* GitHub: https://github.com/fate-ewi/bayesdfa -* Source code: https://github.com/cran/bayesdfa -* Date/Publication: 2024-02-26 20:50:06 UTC -* Number of recursive dependencies: 89 - -Run `revdepcheck::cloud_details(, "bayesdfa")` for more info - -
- -## In both - -* checking whether package ‘bayesdfa’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/bayesdfa/new/bayesdfa.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘bayesdfa’ ... -** package ‘bayesdfa’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ -using C++17 - - -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/opt/R/4.3.1/lib/R/site-library/BH/include' -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppEigen/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -I'/opt/R/4.3.1/lib/R/site-library/rstan/include' -I'/opt/R/4.3.1/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -In file included from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/Core:205, -... -/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:56: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_dfa_namespace::model_dfa; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ -/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:10: required from here -/opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] - 654 | return internal::first_aligned::alignment),Derived>(m); - | ^~~~~~~~~ -g++: fatal error: Killed signal terminated program cc1plus -compilation terminated. -make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stanExports_dfa.o] Error 1 -ERROR: compilation failed for package ‘bayesdfa’ -* removing ‘/tmp/workdir/bayesdfa/new/bayesdfa.Rcheck/bayesdfa’ - - -``` -### CRAN - -``` -* installing *source* package ‘bayesdfa’ ... -** package ‘bayesdfa’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ -using C++17 - - -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/opt/R/4.3.1/lib/R/site-library/BH/include' -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppEigen/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -I'/opt/R/4.3.1/lib/R/site-library/rstan/include' -I'/opt/R/4.3.1/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -In file included from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/Core:205, -... -/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:56: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_dfa_namespace::model_dfa; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ -/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:10: required from here -/opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] - 654 | return internal::first_aligned::alignment),Derived>(m); - | ^~~~~~~~~ -g++: fatal error: Killed signal terminated program cc1plus -compilation terminated. -make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stanExports_dfa.o] Error 1 -ERROR: compilation failed for package ‘bayesdfa’ -* removing ‘/tmp/workdir/bayesdfa/old/bayesdfa.Rcheck/bayesdfa’ - - ``` # bayesDP @@ -768,7 +782,7 @@ ERROR: lazy loading failed for package ‘BayesFactor’ * GitHub: https://github.com/ocbe-uio/BayesSurvive * Source code: https://github.com/cran/BayesSurvive * Date/Publication: 2024-06-04 13:20:12 UTC -* Number of recursive dependencies: 128 +* Number of recursive dependencies: 129 Run `revdepcheck::cloud_details(, "BayesSurvive")` for more info @@ -803,8 +817,8 @@ checking whether g++ -std=gnu++17 accepts -g... yes ** inst ** byte-compile and prepare package for lazy loading Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace + there is no package called ‘rms’ +Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart Execution halted ERROR: lazy loading failed for package ‘BayesSurvive’ * removing ‘/tmp/workdir/BayesSurvive/new/BayesSurvive.Rcheck/BayesSurvive’ @@ -830,8 +844,8 @@ checking whether g++ -std=gnu++17 accepts -g... yes ** inst ** byte-compile and prepare package for lazy loading Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace + there is no package called ‘rms’ +Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart Execution halted ERROR: lazy loading failed for package ‘BayesSurvive’ * removing ‘/tmp/workdir/BayesSurvive/old/BayesSurvive.Rcheck/BayesSurvive’ @@ -1132,7 +1146,7 @@ ERROR: lazy loading failed for package ‘BFpack’ * GitHub: https://github.com/donaldRwilliams/BGGM * Source code: https://github.com/cran/BGGM * Date/Publication: 2024-07-05 20:30:02 UTC -* Number of recursive dependencies: 208 +* Number of recursive dependencies: 209 Run `revdepcheck::cloud_details(, "BGGM")` for more info @@ -1282,7 +1296,7 @@ ERROR: lazy loading failed for package ‘biosensors.usc’ * GitHub: https://github.com/sujit-sahu/bmstdr * Source code: https://github.com/cran/bmstdr * Date/Publication: 2023-12-18 15:00:02 UTC -* Number of recursive dependencies: 215 +* Number of recursive dependencies: 216 Run `revdepcheck::cloud_details(, "bmstdr")` for more info @@ -1416,26 +1430,26 @@ ERROR: lazy loading failed for package ‘bndovb’ ``` -# CACIMAR +# bsub
-* Version: 1.0.0 -* GitHub: https://github.com/jiang-junyao/CACIMAR -* Source code: https://github.com/cran/CACIMAR -* Date/Publication: 2022-05-18 08:20:02 UTC -* Number of recursive dependencies: 162 +* Version: 1.1.0 +* GitHub: https://github.com/jokergoo/bsub +* Source code: https://github.com/cran/bsub +* Date/Publication: 2021-07-01 15:50:10 UTC +* Number of recursive dependencies: 79 -Run `revdepcheck::cloud_details(, "CACIMAR")` for more info +Run `revdepcheck::cloud_details(, "bsub")` for more info
## In both -* checking whether package ‘CACIMAR’ can be installed ... ERROR +* checking whether package ‘bsub’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/CACIMAR/new/CACIMAR.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/bsub/new/bsub.Rcheck/00install.out’ for details. ``` ## Installation @@ -1443,61 +1457,59 @@ Run `revdepcheck::cloud_details(, "CACIMAR")` for more info ### Devel ``` -* installing *source* package ‘CACIMAR’ ... -** package ‘CACIMAR’ successfully unpacked and MD5 sums checked +* installing *source* package ‘bsub’ ... +** package ‘bsub’ successfully unpacked and MD5 sums checked ** using staged installation ** R -** data -*** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘SeuratObject’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is being loaded, but >= 1.6.4 is required +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + there is no package called ‘rjson’ +Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart Execution halted -ERROR: lazy loading failed for package ‘CACIMAR’ -* removing ‘/tmp/workdir/CACIMAR/new/CACIMAR.Rcheck/CACIMAR’ +ERROR: lazy loading failed for package ‘bsub’ +* removing ‘/tmp/workdir/bsub/new/bsub.Rcheck/bsub’ ``` ### CRAN ``` -* installing *source* package ‘CACIMAR’ ... -** package ‘CACIMAR’ successfully unpacked and MD5 sums checked +* installing *source* package ‘bsub’ ... +** package ‘bsub’ successfully unpacked and MD5 sums checked ** using staged installation ** R -** data -*** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘SeuratObject’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is being loaded, but >= 1.6.4 is required +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + there is no package called ‘rjson’ +Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart Execution halted -ERROR: lazy loading failed for package ‘CACIMAR’ -* removing ‘/tmp/workdir/CACIMAR/old/CACIMAR.Rcheck/CACIMAR’ +ERROR: lazy loading failed for package ‘bsub’ +* removing ‘/tmp/workdir/bsub/old/bsub.Rcheck/bsub’ ``` -# CalibrationCurves +# CACIMAR
-* Version: 2.0.3 -* GitHub: NA -* Source code: https://github.com/cran/CalibrationCurves -* Date/Publication: 2024-07-02 08:50:02 UTC -* Number of recursive dependencies: 78 +* Version: 1.0.0 +* GitHub: https://github.com/jiang-junyao/CACIMAR +* Source code: https://github.com/cran/CACIMAR +* Date/Publication: 2022-05-18 08:20:02 UTC +* Number of recursive dependencies: 162 -Run `revdepcheck::cloud_details(, "CalibrationCurves")` for more info +Run `revdepcheck::cloud_details(, "CACIMAR")` for more info
## In both -* checking whether package ‘CalibrationCurves’ can be installed ... ERROR +* checking whether package ‘CACIMAR’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/CalibrationCurves/new/CalibrationCurves.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/CACIMAR/new/CACIMAR.Rcheck/00install.out’ for details. ``` ## Installation @@ -1505,38 +1517,38 @@ Run `revdepcheck::cloud_details(, "CalibrationCurves")` for more info ### Devel ``` -* installing *source* package ‘CalibrationCurves’ ... -** package ‘CalibrationCurves’ successfully unpacked and MD5 sums checked +* installing *source* package ‘CACIMAR’ ... +** package ‘CACIMAR’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘rms’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Error: package or namespace load failed for ‘SeuratObject’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): + namespace ‘Matrix’ 1.5-4.1 is being loaded, but >= 1.6.4 is required Execution halted -ERROR: lazy loading failed for package ‘CalibrationCurves’ -* removing ‘/tmp/workdir/CalibrationCurves/new/CalibrationCurves.Rcheck/CalibrationCurves’ +ERROR: lazy loading failed for package ‘CACIMAR’ +* removing ‘/tmp/workdir/CACIMAR/new/CACIMAR.Rcheck/CACIMAR’ ``` ### CRAN ``` -* installing *source* package ‘CalibrationCurves’ ... -** package ‘CalibrationCurves’ successfully unpacked and MD5 sums checked +* installing *source* package ‘CACIMAR’ ... +** package ‘CACIMAR’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘rms’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Error: package or namespace load failed for ‘SeuratObject’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): + namespace ‘Matrix’ 1.5-4.1 is being loaded, but >= 1.6.4 is required Execution halted -ERROR: lazy loading failed for package ‘CalibrationCurves’ -* removing ‘/tmp/workdir/CalibrationCurves/old/CalibrationCurves.Rcheck/CalibrationCurves’ +ERROR: lazy loading failed for package ‘CACIMAR’ +* removing ‘/tmp/workdir/CACIMAR/old/CACIMAR.Rcheck/CACIMAR’ ``` @@ -1598,85 +1610,7 @@ ERROR: lazy loading failed for package ‘caROC’ ``` -# CaseBasedReasoning - -
- -* Version: 0.3 -* GitHub: https://github.com/sipemu/case-based-reasoning -* Source code: https://github.com/cran/CaseBasedReasoning -* Date/Publication: 2023-05-02 08:40:02 UTC -* Number of recursive dependencies: 106 - -Run `revdepcheck::cloud_details(, "CaseBasedReasoning")` for more info - -
- -## In both - -* checking whether package ‘CaseBasedReasoning’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/CaseBasedReasoning/new/CaseBasedReasoning.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘CaseBasedReasoning’ ... -** package ‘CaseBasedReasoning’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -I/usr/local/include -fpic -g -O2 -c distanceAPI.cpp -o distanceAPI.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -I/usr/local/include -fpic -g -O2 -c distances.cpp -o distances.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -I/usr/local/include -fpic -g -O2 -c order.cpp -o order.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -I/usr/local/include -fpic -g -O2 -c weightedKNN.cpp -o weightedKNN.o -... -g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o CaseBasedReasoning.so RcppExports.o distanceAPI.o distances.o order.o weightedKNN.o -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/CaseBasedReasoning/new/CaseBasedReasoning.Rcheck/00LOCK-CaseBasedReasoning/00new/CaseBasedReasoning/libs -** R -** inst -** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘rms’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Execution halted -ERROR: lazy loading failed for package ‘CaseBasedReasoning’ -* removing ‘/tmp/workdir/CaseBasedReasoning/new/CaseBasedReasoning.Rcheck/CaseBasedReasoning’ - - -``` -### CRAN - -``` -* installing *source* package ‘CaseBasedReasoning’ ... -** package ‘CaseBasedReasoning’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -I/usr/local/include -fpic -g -O2 -c distanceAPI.cpp -o distanceAPI.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -I/usr/local/include -fpic -g -O2 -c distances.cpp -o distances.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -I/usr/local/include -fpic -g -O2 -c order.cpp -o order.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -I/usr/local/include -fpic -g -O2 -c weightedKNN.cpp -o weightedKNN.o -... -g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o CaseBasedReasoning.so RcppExports.o distanceAPI.o distances.o order.o weightedKNN.o -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/CaseBasedReasoning/old/CaseBasedReasoning.Rcheck/00LOCK-CaseBasedReasoning/00new/CaseBasedReasoning/libs -** R -** inst -** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘rms’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Execution halted -ERROR: lazy loading failed for package ‘CaseBasedReasoning’ -* removing ‘/tmp/workdir/CaseBasedReasoning/old/CaseBasedReasoning.Rcheck/CaseBasedReasoning’ - - -``` -# CGPfunctions +# CGPfunctions
@@ -1684,7 +1618,7 @@ ERROR: lazy loading failed for package ‘CaseBasedReasoning’ * GitHub: https://github.com/ibecav/CGPfunctions * Source code: https://github.com/cran/CGPfunctions * Date/Publication: 2020-11-12 14:50:09 UTC -* Number of recursive dependencies: 158 +* Number of recursive dependencies: 148 Run `revdepcheck::cloud_details(, "CGPfunctions")` for more info @@ -1739,6 +1673,158 @@ ERROR: lazy loading failed for package ‘CGPfunctions’ * removing ‘/tmp/workdir/CGPfunctions/old/CGPfunctions.Rcheck/CGPfunctions’ +``` +# chemodiv + +
+ +* Version: 0.3.0 +* GitHub: https://github.com/hpetren/chemodiv +* Source code: https://github.com/cran/chemodiv +* Date/Publication: 2023-08-17 17:52:33 UTC +* Number of recursive dependencies: 170 + +Run `revdepcheck::cloud_details(, "chemodiv")` for more info + +
+ +## Error before installation + +### Devel + +``` +* using log directory ‘/tmp/workdir/chemodiv/new/chemodiv.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘chemodiv/DESCRIPTION’ ... OK +... +* this is package ‘chemodiv’ version ‘0.3.0’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Packages required but not available: 'fmcsR', 'ChemmineR' + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +### CRAN + +``` +* using log directory ‘/tmp/workdir/chemodiv/old/chemodiv.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘chemodiv/DESCRIPTION’ ... OK +... +* this is package ‘chemodiv’ version ‘0.3.0’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Packages required but not available: 'fmcsR', 'ChemmineR' + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +# chicane + +
+ +* Version: 0.1.8 +* GitHub: NA +* Source code: https://github.com/cran/chicane +* Date/Publication: 2021-11-06 15:00:16 UTC +* Number of recursive dependencies: 177 + +Run `revdepcheck::cloud_details(, "chicane")` for more info + +
+ +## Error before installation + +### Devel + +``` +* using log directory ‘/tmp/workdir/chicane/new/chicane.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘chicane/DESCRIPTION’ ... OK +... +* checking tests ... OK + Running ‘testthat.R’ +* checking for unstated dependencies in vignettes ... OK +* checking package vignettes in ‘inst/doc’ ... OK +* checking running R code from vignettes ... OK + ‘Getting_Started.Rmd’ using ‘UTF-8’... OK + ‘Visualising_Interactions.Rmd’ using ‘UTF-8’... OK +* checking re-building of vignette outputs ... OK +* DONE +Status: 1 WARNING, 1 NOTE + + + + + +``` +### CRAN + +``` +* using log directory ‘/tmp/workdir/chicane/old/chicane.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘chicane/DESCRIPTION’ ... OK +... +* checking tests ... OK + Running ‘testthat.R’ +* checking for unstated dependencies in vignettes ... OK +* checking package vignettes in ‘inst/doc’ ... OK +* checking running R code from vignettes ... OK + ‘Getting_Started.Rmd’ using ‘UTF-8’... OK + ‘Visualising_Interactions.Rmd’ using ‘UTF-8’... OK +* checking re-building of vignette outputs ... OK +* DONE +Status: 1 WARNING, 1 NOTE + + + + + ``` # chipPCR @@ -1803,6 +1889,82 @@ ERROR: lazy loading failed for package ‘chipPCR’ * removing ‘/tmp/workdir/chipPCR/old/chipPCR.Rcheck/chipPCR’ +``` +# cinaR + +
+ +* Version: 0.2.3 +* GitHub: https://github.com/eonurk/cinaR +* Source code: https://github.com/cran/cinaR +* Date/Publication: 2022-05-18 14:00:09 UTC +* Number of recursive dependencies: 177 + +Run `revdepcheck::cloud_details(, "cinaR")` for more info + +
+ +## Error before installation + +### Devel + +``` +* using log directory ‘/tmp/workdir/cinaR/new/cinaR.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘cinaR/DESCRIPTION’ ... OK +... +* checking package dependencies ... ERROR +Packages required but not available: + 'ChIPseeker', 'TxDb.Hsapiens.UCSC.hg38.knownGene', + 'TxDb.Hsapiens.UCSC.hg19.knownGene', + 'TxDb.Mmusculus.UCSC.mm10.knownGene' + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +### CRAN + +``` +* using log directory ‘/tmp/workdir/cinaR/old/cinaR.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘cinaR/DESCRIPTION’ ... OK +... +* checking package dependencies ... ERROR +Packages required but not available: + 'ChIPseeker', 'TxDb.Hsapiens.UCSC.hg38.knownGene', + 'TxDb.Hsapiens.UCSC.hg19.knownGene', + 'TxDb.Mmusculus.UCSC.mm10.knownGene' + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + ``` # cmprskcoxmsm @@ -1866,49 +2028,125 @@ ERROR: lazy loading failed for package ‘cmprskcoxmsm’ ``` -# coarseDataTools +# CNVScope
-* Version: 0.6-6 -* GitHub: NA -* Source code: https://github.com/cran/coarseDataTools -* Date/Publication: 2021-12-09 17:20:05 UTC -* Number of recursive dependencies: 17 +* Version: 3.7.2 +* GitHub: https://github.com/jamesdalg/CNVScope +* Source code: https://github.com/cran/CNVScope +* Date/Publication: 2022-03-30 23:40:08 UTC +* Number of recursive dependencies: 206 -Run `revdepcheck::cloud_details(, "coarseDataTools")` for more info +Run `revdepcheck::cloud_details(, "CNVScope")` for more info
-## In both - -* checking whether package ‘coarseDataTools’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/coarseDataTools/new/coarseDataTools.Rcheck/00install.out’ for details. - ``` - -## Installation +## Error before installation ### Devel ``` -* installing *source* package ‘coarseDataTools’ ... -** package ‘coarseDataTools’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘coarseDataTools’ -* removing ‘/tmp/workdir/coarseDataTools/new/coarseDataTools.Rcheck/coarseDataTools’ +* using log directory ‘/tmp/workdir/CNVScope/new/CNVScope.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘CNVScope/DESCRIPTION’ ... OK +... +Packages required but not available: 'GenomicInteractions', 'rtracklayer' +Packages suggested but not available for checking: + 'ComplexHeatmap', 'HiCseg', 'GenomicFeatures', + 'BSgenome.Hsapiens.UCSC.hg19' -``` +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +### CRAN + +``` +* using log directory ‘/tmp/workdir/CNVScope/old/CNVScope.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘CNVScope/DESCRIPTION’ ... OK +... +Packages required but not available: 'GenomicInteractions', 'rtracklayer' + +Packages suggested but not available for checking: + 'ComplexHeatmap', 'HiCseg', 'GenomicFeatures', + 'BSgenome.Hsapiens.UCSC.hg19' + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +# coarseDataTools + +
+ +* Version: 0.6-6 +* GitHub: NA +* Source code: https://github.com/cran/coarseDataTools +* Date/Publication: 2021-12-09 17:20:05 UTC +* Number of recursive dependencies: 17 + +Run `revdepcheck::cloud_details(, "coarseDataTools")` for more info + +
+ +## In both + +* checking whether package ‘coarseDataTools’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/coarseDataTools/new/coarseDataTools.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘coarseDataTools’ ... +** package ‘coarseDataTools’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘coarseDataTools’ +* removing ‘/tmp/workdir/coarseDataTools/new/coarseDataTools.Rcheck/coarseDataTools’ + + +``` ### CRAN ``` @@ -1992,26 +2230,26 @@ ERROR: lazy loading failed for package ‘COMBO’ ``` -# ConnectednessApproach +# COMMA
-* Version: 1.0.3 +* Version: 1.0.0 * GitHub: NA -* Source code: https://github.com/cran/ConnectednessApproach -* Date/Publication: 2024-06-16 16:20:02 UTC -* Number of recursive dependencies: 131 +* Source code: https://github.com/cran/COMMA +* Date/Publication: 2024-07-21 10:10:05 UTC +* Number of recursive dependencies: 72 -Run `revdepcheck::cloud_details(, "ConnectednessApproach")` for more info +Run `revdepcheck::cloud_details(, "COMMA")` for more info
## In both -* checking whether package ‘ConnectednessApproach’ can be installed ... ERROR +* checking whether package ‘COMMA’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/ConnectednessApproach/new/ConnectednessApproach.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/COMMA/new/COMMA.Rcheck/00install.out’ for details. ``` ## Installation @@ -2019,61 +2257,59 @@ Run `revdepcheck::cloud_details(, "ConnectednessApproach")` for more info ### Devel ``` -* installing *source* package ‘ConnectednessApproach’ ... -** package ‘ConnectednessApproach’ successfully unpacked and MD5 sums checked +* installing *source* package ‘COMMA’ ... +** package ‘COMMA’ successfully unpacked and MD5 sums checked ** using staged installation ** R -** data -*** moving datasets to lazyload DB +** inst ** byte-compile and prepare package for lazy loading Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘ConnectednessApproach’ -* removing ‘/tmp/workdir/ConnectednessApproach/new/ConnectednessApproach.Rcheck/ConnectednessApproach’ +ERROR: lazy loading failed for package ‘COMMA’ +* removing ‘/tmp/workdir/COMMA/new/COMMA.Rcheck/COMMA’ ``` ### CRAN ``` -* installing *source* package ‘ConnectednessApproach’ ... -** package ‘ConnectednessApproach’ successfully unpacked and MD5 sums checked +* installing *source* package ‘COMMA’ ... +** package ‘COMMA’ successfully unpacked and MD5 sums checked ** using staged installation ** R -** data -*** moving datasets to lazyload DB +** inst ** byte-compile and prepare package for lazy loading Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘ConnectednessApproach’ -* removing ‘/tmp/workdir/ConnectednessApproach/old/ConnectednessApproach.Rcheck/ConnectednessApproach’ +ERROR: lazy loading failed for package ‘COMMA’ +* removing ‘/tmp/workdir/COMMA/old/COMMA.Rcheck/COMMA’ ``` -# contrast +# ConnectednessApproach
-* Version: 0.24.2 -* GitHub: https://github.com/Alanocallaghan/contrast -* Source code: https://github.com/cran/contrast -* Date/Publication: 2022-10-05 17:20:09 UTC -* Number of recursive dependencies: 111 +* Version: 1.0.3 +* GitHub: NA +* Source code: https://github.com/cran/ConnectednessApproach +* Date/Publication: 2024-06-16 16:20:02 UTC +* Number of recursive dependencies: 131 -Run `revdepcheck::cloud_details(, "contrast")` for more info +Run `revdepcheck::cloud_details(, "ConnectednessApproach")` for more info
## In both -* checking whether package ‘contrast’ can be installed ... ERROR +* checking whether package ‘ConnectednessApproach’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/contrast/new/contrast.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/ConnectednessApproach/new/ConnectednessApproach.Rcheck/00install.out’ for details. ``` ## Installation @@ -2081,40 +2317,114 @@ Run `revdepcheck::cloud_details(, "contrast")` for more info ### Devel ``` -* installing *source* package ‘contrast’ ... -** package ‘contrast’ successfully unpacked and MD5 sums checked +* installing *source* package ‘ConnectednessApproach’ ... +** package ‘ConnectednessApproach’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB -** inst ** byte-compile and prepare package for lazy loading Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘contrast’ -* removing ‘/tmp/workdir/contrast/new/contrast.Rcheck/contrast’ +ERROR: lazy loading failed for package ‘ConnectednessApproach’ +* removing ‘/tmp/workdir/ConnectednessApproach/new/ConnectednessApproach.Rcheck/ConnectednessApproach’ ``` ### CRAN ``` -* installing *source* package ‘contrast’ ... -** package ‘contrast’ successfully unpacked and MD5 sums checked +* installing *source* package ‘ConnectednessApproach’ ... +** package ‘ConnectednessApproach’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB -** inst ** byte-compile and prepare package for lazy loading Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘contrast’ -* removing ‘/tmp/workdir/contrast/old/contrast.Rcheck/contrast’ +ERROR: lazy loading failed for package ‘ConnectednessApproach’ +* removing ‘/tmp/workdir/ConnectednessApproach/old/ConnectednessApproach.Rcheck/ConnectednessApproach’ + + +``` +# conos + +
+ +* Version: 1.5.2 +* GitHub: https://github.com/kharchenkolab/conos +* Source code: https://github.com/cran/conos +* Date/Publication: 2024-02-26 19:30:05 UTC +* Number of recursive dependencies: 240 + +Run `revdepcheck::cloud_details(, "conos")` for more info + +
+ +## Error before installation + +### Devel + +``` +* using log directory ‘/tmp/workdir/conos/new/conos.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘conos/DESCRIPTION’ ... OK +... +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package required but not available: ‘ComplexHeatmap’ + +Package suggested but not available for checking: ‘pagoda2’ + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +### CRAN + +``` +* using log directory ‘/tmp/workdir/conos/old/conos.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘conos/DESCRIPTION’ ... OK +... +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package required but not available: ‘ComplexHeatmap’ + +Package suggested but not available for checking: ‘pagoda2’ + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + ``` @@ -2122,59 +2432,75 @@ ERROR: lazy loading failed for package ‘contrast’
-* Version: 0.4-4 +* Version: 0.5-1 * GitHub: NA * Source code: https://github.com/cran/cotram -* Date/Publication: 2023-05-25 15:30:02 UTC -* Number of recursive dependencies: 31 +* Date/Publication: 2024-07-19 10:20:03 UTC +* Number of recursive dependencies: 32 Run `revdepcheck::cloud_details(, "cotram")` for more info
-## In both - -* checking whether package ‘cotram’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/cotram/new/cotram.Rcheck/00install.out’ for details. - ``` - -## Installation +## Error before installation ### Devel ``` -* installing *source* package ‘cotram’ ... -** package ‘cotram’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -** inst -** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘mlt’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - there is no package called ‘coneproj’ -Execution halted -ERROR: lazy loading failed for package ‘cotram’ -* removing ‘/tmp/workdir/cotram/new/cotram.Rcheck/cotram’ +* using log directory ‘/tmp/workdir/cotram/new/cotram.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘cotram/DESCRIPTION’ ... OK +... +* this is package ‘cotram’ version ‘0.5-1’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Packages required but not available: 'tram', 'mlt' + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + ``` ### CRAN ``` -* installing *source* package ‘cotram’ ... -** package ‘cotram’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -** inst -** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘mlt’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - there is no package called ‘coneproj’ -Execution halted -ERROR: lazy loading failed for package ‘cotram’ -* removing ‘/tmp/workdir/cotram/old/cotram.Rcheck/cotram’ +* using log directory ‘/tmp/workdir/cotram/old/cotram.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘cotram/DESCRIPTION’ ... OK +... +* this is package ‘cotram’ version ‘0.5-1’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Packages required but not available: 'tram', 'mlt' + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + ``` @@ -2256,65 +2582,79 @@ ERROR: lazy loading failed for package ‘countSTAR’ ``` -# coxed +# crosstalkr
-* Version: 0.3.3 -* GitHub: https://github.com/jkropko/coxed -* Source code: https://github.com/cran/coxed -* Date/Publication: 2020-08-02 01:20:07 UTC -* Number of recursive dependencies: 95 +* Version: 1.0.5 +* GitHub: NA +* Source code: https://github.com/cran/crosstalkr +* Date/Publication: 2024-05-17 11:40:09 UTC +* Number of recursive dependencies: 164 -Run `revdepcheck::cloud_details(, "coxed")` for more info +Run `revdepcheck::cloud_details(, "crosstalkr")` for more info
-## In both - -* checking whether package ‘coxed’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/coxed/new/coxed.Rcheck/00install.out’ for details. - ``` - -## Installation +## Error before installation ### Devel ``` -* installing *source* package ‘coxed’ ... -** package ‘coxed’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘rms’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Execution halted -ERROR: lazy loading failed for package ‘coxed’ -* removing ‘/tmp/workdir/coxed/new/coxed.Rcheck/coxed’ +* using log directory ‘/tmp/workdir/crosstalkr/new/crosstalkr.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘crosstalkr/DESCRIPTION’ ... OK +... +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package required but not available: ‘ensembldb’ + +Package suggested but not available for checking: ‘EnsDb.Hsapiens.v86’ + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + ``` ### CRAN ``` -* installing *source* package ‘coxed’ ... -** package ‘coxed’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘rms’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Execution halted -ERROR: lazy loading failed for package ‘coxed’ -* removing ‘/tmp/workdir/coxed/old/coxed.Rcheck/coxed’ +* using log directory ‘/tmp/workdir/crosstalkr/old/crosstalkr.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘crosstalkr/DESCRIPTION’ ... OK +... +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package required but not available: ‘ensembldb’ + +Package suggested but not available for checking: ‘EnsDb.Hsapiens.v86’ + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + ``` @@ -2352,8 +2692,8 @@ Run `revdepcheck::cloud_details(, "CSCNet")` for more info ** inst ** byte-compile and prepare package for lazy loading Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace + there is no package called ‘rms’ +Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart Execution halted ERROR: lazy loading failed for package ‘CSCNet’ * removing ‘/tmp/workdir/CSCNet/new/CSCNet.Rcheck/CSCNet’ @@ -2370,86 +2710,22 @@ ERROR: lazy loading failed for package ‘CSCNet’ ** inst ** byte-compile and prepare package for lazy loading Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace + there is no package called ‘rms’ +Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart Execution halted ERROR: lazy loading failed for package ‘CSCNet’ * removing ‘/tmp/workdir/CSCNet/old/CSCNet.Rcheck/CSCNet’ -``` -# csmpv - -
- -* Version: 1.0.3 -* GitHub: NA -* Source code: https://github.com/cran/csmpv -* Date/Publication: 2024-03-01 18:12:44 UTC -* Number of recursive dependencies: 178 - -Run `revdepcheck::cloud_details(, "csmpv")` for more info - -
- -## In both - -* checking whether package ‘csmpv’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/csmpv/new/csmpv.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘csmpv’ ... -** package ‘csmpv’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘csmpv’ -* removing ‘/tmp/workdir/csmpv/new/csmpv.Rcheck/csmpv’ - - -``` -### CRAN - -``` -* installing *source* package ‘csmpv’ ... -** package ‘csmpv’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘csmpv’ -* removing ‘/tmp/workdir/csmpv/old/csmpv.Rcheck/csmpv’ - - ``` # ctsem
-* Version: 3.10.0 +* Version: 3.10.1 * GitHub: https://github.com/cdriveraus/ctsem * Source code: https://github.com/cran/ctsem -* Date/Publication: 2024-05-09 14:40:03 UTC +* Date/Publication: 2024-08-19 14:40:06 UTC * Number of recursive dependencies: 158 Run `revdepcheck::cloud_details(, "ctsem")` for more info @@ -2519,68 +2795,6 @@ ERROR: compilation failed for package ‘ctsem’ * removing ‘/tmp/workdir/ctsem/old/ctsem.Rcheck/ctsem’ -``` -# cwbtools - -
- -* Version: 0.4.2 -* GitHub: https://github.com/PolMine/cwbtools -* Source code: https://github.com/cran/cwbtools -* Date/Publication: 2024-04-28 22:20:06 UTC -* Number of recursive dependencies: 108 - -Run `revdepcheck::cloud_details(, "cwbtools")` for more info - -
- -## In both - -* checking whether package ‘cwbtools’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/cwbtools/new/cwbtools.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘cwbtools’ ... -** package ‘cwbtools’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error in dyn.load(file, DLLpath = DLLpath, ...) : - unable to load shared object '/opt/R/4.3.1/lib/R/site-library/redland/libs/redland.so': - librdf.so.0: cannot open shared object file: No such file or directory -Calls: ... asNamespace -> loadNamespace -> library.dynam -> dyn.load -Execution halted -ERROR: lazy loading failed for package ‘cwbtools’ -* removing ‘/tmp/workdir/cwbtools/new/cwbtools.Rcheck/cwbtools’ - - -``` -### CRAN - -``` -* installing *source* package ‘cwbtools’ ... -** package ‘cwbtools’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error in dyn.load(file, DLLpath = DLLpath, ...) : - unable to load shared object '/opt/R/4.3.1/lib/R/site-library/redland/libs/redland.so': - librdf.so.0: cannot open shared object file: No such file or directory -Calls: ... asNamespace -> loadNamespace -> library.dynam -> dyn.load -Execution halted -ERROR: lazy loading failed for package ‘cwbtools’ -* removing ‘/tmp/workdir/cwbtools/old/cwbtools.Rcheck/cwbtools’ - - ``` # dataone @@ -2714,55 +2928,71 @@ ERROR: lazy loading failed for package ‘datapack’ * GitHub: NA * Source code: https://github.com/cran/deeptrafo * Date/Publication: 2022-11-22 09:50:02 UTC -* Number of recursive dependencies: 95 +* Number of recursive dependencies: 96 Run `revdepcheck::cloud_details(, "deeptrafo")` for more info
-## In both - -* checking whether package ‘deeptrafo’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/deeptrafo/new/deeptrafo.Rcheck/00install.out’ for details. - ``` - -## Installation +## Error before installation ### Devel ``` -* installing *source* package ‘deeptrafo’ ... -** package ‘deeptrafo’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - there is no package called ‘coneproj’ -Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart -Execution halted -ERROR: lazy loading failed for package ‘deeptrafo’ -* removing ‘/tmp/workdir/deeptrafo/new/deeptrafo.Rcheck/deeptrafo’ +* using log directory ‘/tmp/workdir/deeptrafo/new/deeptrafo.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘deeptrafo/DESCRIPTION’ ... OK +... +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package required but not available: ‘mlt’ + +Packages suggested but not available for checking: 'tram', 'cotram' + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + ``` ### CRAN ``` -* installing *source* package ‘deeptrafo’ ... -** package ‘deeptrafo’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - there is no package called ‘coneproj’ -Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart -Execution halted -ERROR: lazy loading failed for package ‘deeptrafo’ -* removing ‘/tmp/workdir/deeptrafo/old/deeptrafo.Rcheck/deeptrafo’ +* using log directory ‘/tmp/workdir/deeptrafo/old/deeptrafo.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘deeptrafo/DESCRIPTION’ ... OK +... +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package required but not available: ‘mlt’ + +Packages suggested but not available for checking: 'tram', 'cotram' + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + ``` @@ -2839,6 +3069,62 @@ ERROR: lazy loading failed for package ‘diveMove’ * removing ‘/tmp/workdir/diveMove/old/diveMove.Rcheck/diveMove’ +``` +# do + +
+ +* Version: 2.0.0.0 +* GitHub: https://github.com/yikeshu0611/do +* Source code: https://github.com/cran/do +* Date/Publication: 2021-08-03 11:40:02 UTC +* Number of recursive dependencies: 70 + +Run `revdepcheck::cloud_details(, "do")` for more info + +
+ +## In both + +* checking whether package ‘do’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/do/new/do.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘do’ ... +** package ‘do’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +Error: object ‘.__T__[:base’ is not exported by 'namespace:data.table' +Execution halted +ERROR: lazy loading failed for package ‘do’ +* removing ‘/tmp/workdir/do/new/do.Rcheck/do’ + + +``` +### CRAN + +``` +* installing *source* package ‘do’ ... +** package ‘do’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +Error: object ‘.__T__[:base’ is not exported by 'namespace:data.table' +Execution halted +ERROR: lazy loading failed for package ‘do’ +* removing ‘/tmp/workdir/do/old/do.Rcheck/do’ + + ``` # DR.SC @@ -2917,6 +3203,82 @@ ERROR: lazy loading failed for package ‘DR.SC’ * removing ‘/tmp/workdir/DR.SC/old/DR.SC.Rcheck/DR.SC’ +``` +# driveR + +
+ +* Version: 0.4.1 +* GitHub: https://github.com/egeulgen/driveR +* Source code: https://github.com/cran/driveR +* Date/Publication: 2023-08-19 14:02:36 UTC +* Number of recursive dependencies: 166 + +Run `revdepcheck::cloud_details(, "driveR")` for more info + +
+ +## Error before installation + +### Devel + +``` +* using log directory ‘/tmp/workdir/driveR/new/driveR.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘driveR/DESCRIPTION’ ... OK +... +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Packages required but not available: + 'GenomicFeatures', 'TxDb.Hsapiens.UCSC.hg19.knownGene', + 'TxDb.Hsapiens.UCSC.hg38.knownGene' + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +### CRAN + +``` +* using log directory ‘/tmp/workdir/driveR/old/driveR.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘driveR/DESCRIPTION’ ... OK +... +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Packages required but not available: + 'GenomicFeatures', 'TxDb.Hsapiens.UCSC.hg19.knownGene', + 'TxDb.Hsapiens.UCSC.hg38.knownGene' + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + ``` # drtmle @@ -2978,86 +3340,178 @@ ERROR: lazy loading failed for package ‘drtmle’ ``` -# ecolottery +# DrugSim2DR
-* Version: 1.0.0 -* GitHub: https://github.com/frmunoz/ecolottery -* Source code: https://github.com/cran/ecolottery -* Date/Publication: 2017-07-03 11:01:29 UTC -* Number of recursive dependencies: 88 +* Version: 0.1.1 +* GitHub: NA +* Source code: https://github.com/cran/DrugSim2DR +* Date/Publication: 2023-08-10 04:50:02 UTC +* Number of recursive dependencies: 89 -Run `revdepcheck::cloud_details(, "ecolottery")` for more info +Run `revdepcheck::cloud_details(, "DrugSim2DR")` for more info
-## In both +## Error before installation -* checking whether package ‘ecolottery’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/ecolottery/new/ecolottery.Rcheck/00install.out’ for details. - ``` +### Devel -## Installation +``` +* using log directory ‘/tmp/workdir/DrugSim2DR/new/DrugSim2DR.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘DrugSim2DR/DESCRIPTION’ ... OK +... +* this is package ‘DrugSim2DR’ version ‘0.1.1’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package required but not available: ‘ChemmineR’ + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +### CRAN + +``` +* using log directory ‘/tmp/workdir/DrugSim2DR/old/DrugSim2DR.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘DrugSim2DR/DESCRIPTION’ ... OK +... +* this is package ‘DrugSim2DR’ version ‘0.1.1’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package required but not available: ‘ChemmineR’ + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +# DRviaSPCN + +
+ +* Version: 0.1.4 +* GitHub: NA +* Source code: https://github.com/cran/DRviaSPCN +* Date/Publication: 2024-01-13 05:00:02 UTC +* Number of recursive dependencies: 180 + +Run `revdepcheck::cloud_details(, "DRviaSPCN")` for more info + +
+ +## Error before installation ### Devel ``` -* installing *source* package ‘ecolottery’ ... -** package ‘ecolottery’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘ecolottery’ -* removing ‘/tmp/workdir/ecolottery/new/ecolottery.Rcheck/ecolottery’ +* using log directory ‘/tmp/workdir/DRviaSPCN/new/DRviaSPCN.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘DRviaSPCN/DESCRIPTION’ ... OK +... +* this is package ‘DRviaSPCN’ version ‘0.1.4’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package required but not available: ‘ChemmineR’ + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + ``` ### CRAN ``` -* installing *source* package ‘ecolottery’ ... -** package ‘ecolottery’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘ecolottery’ -* removing ‘/tmp/workdir/ecolottery/old/ecolottery.Rcheck/ecolottery’ +* using log directory ‘/tmp/workdir/DRviaSPCN/old/DRviaSPCN.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘DRviaSPCN/DESCRIPTION’ ... OK +... +* this is package ‘DRviaSPCN’ version ‘0.1.4’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package required but not available: ‘ChemmineR’ + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + ``` -# EdSurvey +# ech
-* Version: 4.0.7 -* GitHub: https://github.com/American-Institutes-for-Research/EdSurvey -* Source code: https://github.com/cran/EdSurvey -* Date/Publication: 2024-06-27 14:50:14 UTC -* Number of recursive dependencies: 128 +* Version: 0.1.3 +* GitHub: NA +* Source code: https://github.com/cran/ech +* Date/Publication: 2023-05-11 08:50:17 UTC +* Number of recursive dependencies: 126 -Run `revdepcheck::cloud_details(, "EdSurvey")` for more info +Run `revdepcheck::cloud_details(, "ech")` for more info
## In both -* checking whether package ‘EdSurvey’ can be installed ... ERROR +* checking whether package ‘ech’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/EdSurvey/new/EdSurvey.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/ech/new/ech.Rcheck/00install.out’ for details. ``` ## Installation @@ -3065,69 +3519,63 @@ Run `revdepcheck::cloud_details(, "EdSurvey")` for more info ### Devel ``` -* installing *source* package ‘EdSurvey’ ... -** package ‘EdSurvey’ successfully unpacked and MD5 sums checked +* installing *source* package ‘ech’ ... +** package ‘ech’ successfully unpacked and MD5 sums checked ** using staged installation ** R +** data +*** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading -Warning in check_dep_version() : - ABI version mismatch: -lme4 was built with Matrix ABI version 1 -Current Matrix ABI version is 0 -Please re-install lme4 from source or restore original ‘Matrix’ package Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace + there is no package called ‘rjson’ +Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart Execution halted -ERROR: lazy loading failed for package ‘EdSurvey’ -* removing ‘/tmp/workdir/EdSurvey/new/EdSurvey.Rcheck/EdSurvey’ +ERROR: lazy loading failed for package ‘ech’ +* removing ‘/tmp/workdir/ech/new/ech.Rcheck/ech’ ``` ### CRAN ``` -* installing *source* package ‘EdSurvey’ ... -** package ‘EdSurvey’ successfully unpacked and MD5 sums checked +* installing *source* package ‘ech’ ... +** package ‘ech’ successfully unpacked and MD5 sums checked ** using staged installation ** R +** data +*** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading -Warning in check_dep_version() : - ABI version mismatch: -lme4 was built with Matrix ABI version 1 -Current Matrix ABI version is 0 -Please re-install lme4 from source or restore original ‘Matrix’ package Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace + there is no package called ‘rjson’ +Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart Execution halted -ERROR: lazy loading failed for package ‘EdSurvey’ -* removing ‘/tmp/workdir/EdSurvey/old/EdSurvey.Rcheck/EdSurvey’ +ERROR: lazy loading failed for package ‘ech’ +* removing ‘/tmp/workdir/ech/old/ech.Rcheck/ech’ ``` -# EpiEstim +# EcoEnsemble
-* Version: 2.2-4 -* GitHub: https://github.com/mrc-ide/EpiEstim -* Source code: https://github.com/cran/EpiEstim -* Date/Publication: 2021-01-07 16:20:10 UTC +* Version: 1.1.0 +* GitHub: https://github.com/CefasRepRes/EcoEnsemble +* Source code: https://github.com/cran/EcoEnsemble +* Date/Publication: 2024-08-19 17:20:06 UTC * Number of recursive dependencies: 91 -Run `revdepcheck::cloud_details(, "EpiEstim")` for more info +Run `revdepcheck::cloud_details(, "EcoEnsemble")` for more info
## In both -* checking whether package ‘EpiEstim’ can be installed ... ERROR +* checking whether package ‘EcoEnsemble’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/EpiEstim/new/EpiEstim.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/EcoEnsemble/new/EcoEnsemble.Rcheck/00install.out’ for details. ``` ## Installation @@ -3135,13 +3583,221 @@ Run `revdepcheck::cloud_details(, "EpiEstim")` for more info ### Devel ``` -* installing *source* package ‘EpiEstim’ ... -** package ‘EpiEstim’ successfully unpacked and MD5 sums checked +* installing *source* package ‘EcoEnsemble’ ... +** package ‘EcoEnsemble’ successfully unpacked and MD5 sums checked ** using staged installation -** R -** data -** inst -** byte-compile and prepare package for lazy loading +** libs +using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +using C++17 + + +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/opt/R/4.3.1/lib/R/site-library/BH/include' -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppEigen/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -I'/opt/R/4.3.1/lib/R/site-library/rstan/include' -I'/opt/R/4.3.1/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c KF_back.cpp -o KF_back.o +In file included from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/Core:205, +... +/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:56: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_ensemble_model_hierarchical_withdrivers_namespace::model_ensemble_model_hierarchical_withdrivers; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ +/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:10: required from here +/opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] + 654 | return internal::first_aligned::alignment),Derived>(m); + | ^~~~~~~~~ +g++: fatal error: Killed signal terminated program cc1plus +compilation terminated. +make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stanExports_ensemble_model_hierarchical_withdrivers.o] Error 1 +ERROR: compilation failed for package ‘EcoEnsemble’ +* removing ‘/tmp/workdir/EcoEnsemble/new/EcoEnsemble.Rcheck/EcoEnsemble’ + + +``` +### CRAN + +``` +* installing *source* package ‘EcoEnsemble’ ... +** package ‘EcoEnsemble’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +using C++17 + + +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/opt/R/4.3.1/lib/R/site-library/BH/include' -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppEigen/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -I'/opt/R/4.3.1/lib/R/site-library/rstan/include' -I'/opt/R/4.3.1/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c KF_back.cpp -o KF_back.o +In file included from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/Core:205, +... +/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:56: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_ensemble_model_hierarchical_withdrivers_namespace::model_ensemble_model_hierarchical_withdrivers; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ +/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:10: required from here +/opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] + 654 | return internal::first_aligned::alignment),Derived>(m); + | ^~~~~~~~~ +g++: fatal error: Killed signal terminated program cc1plus +compilation terminated. +make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stanExports_ensemble_model_hierarchical_withdrivers.o] Error 1 +ERROR: compilation failed for package ‘EcoEnsemble’ +* removing ‘/tmp/workdir/EcoEnsemble/old/EcoEnsemble.Rcheck/EcoEnsemble’ + + +``` +# ecolottery + +
+ +* Version: 1.0.0 +* GitHub: https://github.com/frmunoz/ecolottery +* Source code: https://github.com/cran/ecolottery +* Date/Publication: 2017-07-03 11:01:29 UTC +* Number of recursive dependencies: 88 + +Run `revdepcheck::cloud_details(, "ecolottery")` for more info + +
+ +## In both + +* checking whether package ‘ecolottery’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/ecolottery/new/ecolottery.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘ecolottery’ ... +** package ‘ecolottery’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘ecolottery’ +* removing ‘/tmp/workdir/ecolottery/new/ecolottery.Rcheck/ecolottery’ + + +``` +### CRAN + +``` +* installing *source* package ‘ecolottery’ ... +** package ‘ecolottery’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘ecolottery’ +* removing ‘/tmp/workdir/ecolottery/old/ecolottery.Rcheck/ecolottery’ + + +``` +# EdSurvey + +
+ +* Version: 4.0.7 +* GitHub: https://github.com/American-Institutes-for-Research/EdSurvey +* Source code: https://github.com/cran/EdSurvey +* Date/Publication: 2024-06-27 14:50:14 UTC +* Number of recursive dependencies: 128 + +Run `revdepcheck::cloud_details(, "EdSurvey")` for more info + +
+ +## In both + +* checking whether package ‘EdSurvey’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/EdSurvey/new/EdSurvey.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘EdSurvey’ ... +** package ‘EdSurvey’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +Warning in check_dep_version() : + ABI version mismatch: +lme4 was built with Matrix ABI version 1 +Current Matrix ABI version is 0 +Please re-install lme4 from source or restore original ‘Matrix’ package +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘EdSurvey’ +* removing ‘/tmp/workdir/EdSurvey/new/EdSurvey.Rcheck/EdSurvey’ + + +``` +### CRAN + +``` +* installing *source* package ‘EdSurvey’ ... +** package ‘EdSurvey’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +Warning in check_dep_version() : + ABI version mismatch: +lme4 was built with Matrix ABI version 1 +Current Matrix ABI version is 0 +Please re-install lme4 from source or restore original ‘Matrix’ package +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘EdSurvey’ +* removing ‘/tmp/workdir/EdSurvey/old/EdSurvey.Rcheck/EdSurvey’ + + +``` +# EpiEstim + +
+ +* Version: 2.2-4 +* GitHub: https://github.com/mrc-ide/EpiEstim +* Source code: https://github.com/cran/EpiEstim +* Date/Publication: 2021-01-07 16:20:10 UTC +* Number of recursive dependencies: 91 + +Run `revdepcheck::cloud_details(, "EpiEstim")` for more info + +
+ +## In both + +* checking whether package ‘EpiEstim’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/EpiEstim/new/EpiEstim.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘EpiEstim’ ... +** package ‘EpiEstim’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +** inst +** byte-compile and prepare package for lazy loading Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace @@ -3344,68 +4000,6 @@ ERROR: lazy loading failed for package ‘FAIRmaterials’ * removing ‘/tmp/workdir/FAIRmaterials/old/FAIRmaterials.Rcheck/FAIRmaterials’ -``` -# FoReco - -
- -* Version: 0.2.6 -* GitHub: https://github.com/daniGiro/FoReco -* Source code: https://github.com/cran/FoReco -* Date/Publication: 2023-05-16 08:40:10 UTC -* Number of recursive dependencies: 32 - -Run `revdepcheck::cloud_details(, "FoReco")` for more info - -
- -## In both - -* checking whether package ‘FoReco’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/FoReco/new/FoReco.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘FoReco’ ... -** package ‘FoReco’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘osqp’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.1 is required -Execution halted -ERROR: lazy loading failed for package ‘FoReco’ -* removing ‘/tmp/workdir/FoReco/new/FoReco.Rcheck/FoReco’ - - -``` -### CRAN - -``` -* installing *source* package ‘FoReco’ ... -** package ‘FoReco’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘osqp’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.1 is required -Execution halted -ERROR: lazy loading failed for package ‘FoReco’ -* removing ‘/tmp/workdir/FoReco/old/FoReco.Rcheck/FoReco’ - - ``` # FREEtree @@ -3481,88 +4075,93 @@ ERROR: lazy loading failed for package ‘FREEtree’ ``` -# GeneNMF +# GALLO
-* Version: 0.4.0 -* GitHub: https://github.com/carmonalab/GeneNMF -* Source code: https://github.com/cran/GeneNMF -* Date/Publication: 2024-02-29 12:22:40 UTC -* Number of recursive dependencies: 169 +* Version: 1.5 +* GitHub: NA +* Source code: https://github.com/cran/GALLO +* Date/Publication: 2024-06-04 15:30:20 UTC +* Number of recursive dependencies: 142 -Run `revdepcheck::cloud_details(, "GeneNMF")` for more info +Run `revdepcheck::cloud_details(, "GALLO")` for more info
-## In both - -* checking whether package ‘GeneNMF’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/GeneNMF/new/GeneNMF.Rcheck/00install.out’ for details. - ``` - -## Installation +## Error before installation ### Devel ``` -* installing *source* package ‘GeneNMF’ ... -** package ‘GeneNMF’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -Warning: namespace ‘Seurat’ is not available and has been replaced -by .GlobalEnv when processing object ‘sampleObj’ -Warning: namespace ‘Seurat’ is not available and has been replaced -by .GlobalEnv when processing object ‘sampleObj’ -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘GeneNMF’ -* removing ‘/tmp/workdir/GeneNMF/new/GeneNMF.Rcheck/GeneNMF’ +* using log directory ‘/tmp/workdir/GALLO/new/GALLO.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘GALLO/DESCRIPTION’ ... OK +... +* this is package ‘GALLO’ version ‘1.5’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package required but not available: ‘rtracklayer’ + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + ``` ### CRAN ``` -* installing *source* package ‘GeneNMF’ ... -** package ‘GeneNMF’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -Warning: namespace ‘Seurat’ is not available and has been replaced -by .GlobalEnv when processing object ‘sampleObj’ -Warning: namespace ‘Seurat’ is not available and has been replaced -by .GlobalEnv when processing object ‘sampleObj’ -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘GeneNMF’ -* removing ‘/tmp/workdir/GeneNMF/old/GeneNMF.Rcheck/GeneNMF’ +* using log directory ‘/tmp/workdir/GALLO/old/GALLO.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘GALLO/DESCRIPTION’ ... OK +... +* this is package ‘GALLO’ version ‘1.5’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package required but not available: ‘rtracklayer’ + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + ``` -# geomorph +# gap
-* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/geomorph -* Number of recursive dependencies: 72 +* Version: 1.6 +* GitHub: https://github.com/jinghuazhao/R +* Source code: https://github.com/cran/gap +* Date/Publication: 2024-08-27 04:40:06 UTC +* Number of recursive dependencies: 199 -Run `revdepcheck::cloud_details(, "geomorph")` for more info +Run `revdepcheck::cloud_details(, "gap")` for more info
@@ -3571,7 +4170,27 @@ Run `revdepcheck::cloud_details(, "geomorph")` for more info ### Devel ``` +* using log directory ‘/tmp/workdir/gap/new/gap.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘gap/DESCRIPTION’ ... OK +... +--- failed re-building ‘jss.Rnw’ + +SUMMARY: processing the following file failed: + ‘jss.Rnw’ + +Error: Vignette re-building failed. +Execution halted +* DONE +Status: 4 NOTEs @@ -3581,111 +4200,129 @@ Run `revdepcheck::cloud_details(, "geomorph")` for more info ### CRAN ``` +* using log directory ‘/tmp/workdir/gap/old/gap.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘gap/DESCRIPTION’ ... OK +... +--- failed re-building ‘jss.Rnw’ +SUMMARY: processing the following file failed: + ‘jss.Rnw’ + +Error: Vignette re-building failed. +Execution halted + +* DONE +Status: 4 NOTEs ``` -# gfilmm +# geneHapR
-* Version: 2.0.5 -* GitHub: https://github.com/stla/gfilmm -* Source code: https://github.com/cran/gfilmm -* Date/Publication: 2022-07-11 23:20:06 UTC -* Number of recursive dependencies: 139 +* Version: 1.2.4 +* GitHub: NA +* Source code: https://github.com/cran/geneHapR +* Date/Publication: 2024-03-01 14:32:40 UTC +* Number of recursive dependencies: 180 -Run `revdepcheck::cloud_details(, "gfilmm")` for more info +Run `revdepcheck::cloud_details(, "geneHapR")` for more info
-## In both - -* checking whether package ‘gfilmm’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/gfilmm/new/gfilmm.Rcheck/00install.out’ for details. - ``` - -## Installation +## Error before installation ### Devel ``` -* installing *source* package ‘gfilmm’ ... -** package ‘gfilmm’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ -using C++11 -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppEigen/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -In file included from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/Core:205, - from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/Dense:1, - from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/RcppEigenForward.h:28, +* using log directory ‘/tmp/workdir/geneHapR/new/geneHapR.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘geneHapR/DESCRIPTION’ ... OK ... -installing to /tmp/workdir/gfilmm/new/gfilmm.Rcheck/00LOCK-gfilmm/00new/gfilmm/libs -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error: object ‘ewcdf’ is not exported by 'namespace:spatstat.geom' -Execution halted -ERROR: lazy loading failed for package ‘gfilmm’ -* removing ‘/tmp/workdir/gfilmm/new/gfilmm.Rcheck/gfilmm’ +* this is package ‘geneHapR’ version ‘1.2.4’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package required but not available: ‘rtracklayer’ + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + ``` ### CRAN ``` -* installing *source* package ‘gfilmm’ ... -** package ‘gfilmm’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ -using C++11 -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppEigen/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -In file included from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/Core:205, - from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/Dense:1, - from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/RcppEigenForward.h:28, +* using log directory ‘/tmp/workdir/geneHapR/old/geneHapR.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘geneHapR/DESCRIPTION’ ... OK ... -installing to /tmp/workdir/gfilmm/old/gfilmm.Rcheck/00LOCK-gfilmm/00new/gfilmm/libs -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error: object ‘ewcdf’ is not exported by 'namespace:spatstat.geom' -Execution halted -ERROR: lazy loading failed for package ‘gfilmm’ -* removing ‘/tmp/workdir/gfilmm/old/gfilmm.Rcheck/gfilmm’ +* this is package ‘geneHapR’ version ‘1.2.4’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package required but not available: ‘rtracklayer’ + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + ``` -# gfilogisreg +# GeneNMF
-* Version: 1.0.3 -* GitHub: NA -* Source code: https://github.com/cran/gfilogisreg -* Date/Publication: 2024-01-25 17:00:06 UTC -* Number of recursive dependencies: 54 +* Version: 0.6.0 +* GitHub: https://github.com/carmonalab/GeneNMF +* Source code: https://github.com/cran/GeneNMF +* Date/Publication: 2024-07-22 08:30:02 UTC +* Number of recursive dependencies: 161 -Run `revdepcheck::cloud_details(, "gfilogisreg")` for more info +Run `revdepcheck::cloud_details(, "GeneNMF")` for more info
## In both -* checking whether package ‘gfilogisreg’ can be installed ... ERROR +* checking whether package ‘GeneNMF’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/gfilogisreg/new/gfilogisreg.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/GeneNMF/new/GeneNMF.Rcheck/00install.out’ for details. ``` ## Installation @@ -3693,110 +4330,159 @@ Run `revdepcheck::cloud_details(, "gfilogisreg")` for more info ### Devel ``` -* installing *source* package ‘gfilogisreg’ ... -** package ‘gfilogisreg’ successfully unpacked and MD5 sums checked +* installing *source* package ‘GeneNMF’ ... +** package ‘GeneNMF’ successfully unpacked and MD5 sums checked ** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ -using C++17 -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I'/opt/R/4.3.1/lib/R/site-library/roptim/include' -I'/opt/R/4.3.1/lib/R/site-library/BH/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I'/opt/R/4.3.1/lib/R/site-library/roptim/include' -I'/opt/R/4.3.1/lib/R/site-library/BH/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c gfilogisreg.cpp -o gfilogisreg.o -g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o gfilogisreg.so RcppExports.o gfilogisreg.o -fopenmp -llapack -lblas -lgfortran -lm -lquadmath -lgmp -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/gfilogisreg/new/gfilogisreg.Rcheck/00LOCK-gfilogisreg/00new/gfilogisreg/libs ** R +** data +*** moving datasets to lazyload DB +Warning: namespace ‘Seurat’ is not available and has been replaced +by .GlobalEnv when processing object ‘sampleObj’ +Warning: namespace ‘Seurat’ is not available and has been replaced +by .GlobalEnv when processing object ‘sampleObj’ ** inst ** byte-compile and prepare package for lazy loading -Error: object ‘ewcdf’ is not exported by 'namespace:spatstat.geom' +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘gfilogisreg’ -* removing ‘/tmp/workdir/gfilogisreg/new/gfilogisreg.Rcheck/gfilogisreg’ +ERROR: lazy loading failed for package ‘GeneNMF’ +* removing ‘/tmp/workdir/GeneNMF/new/GeneNMF.Rcheck/GeneNMF’ ``` ### CRAN ``` -* installing *source* package ‘gfilogisreg’ ... -** package ‘gfilogisreg’ successfully unpacked and MD5 sums checked +* installing *source* package ‘GeneNMF’ ... +** package ‘GeneNMF’ successfully unpacked and MD5 sums checked ** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ -using C++17 -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I'/opt/R/4.3.1/lib/R/site-library/roptim/include' -I'/opt/R/4.3.1/lib/R/site-library/BH/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I'/opt/R/4.3.1/lib/R/site-library/roptim/include' -I'/opt/R/4.3.1/lib/R/site-library/BH/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c gfilogisreg.cpp -o gfilogisreg.o -g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o gfilogisreg.so RcppExports.o gfilogisreg.o -fopenmp -llapack -lblas -lgfortran -lm -lquadmath -lgmp -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/gfilogisreg/old/gfilogisreg.Rcheck/00LOCK-gfilogisreg/00new/gfilogisreg/libs ** R +** data +*** moving datasets to lazyload DB +Warning: namespace ‘Seurat’ is not available and has been replaced +by .GlobalEnv when processing object ‘sampleObj’ +Warning: namespace ‘Seurat’ is not available and has been replaced +by .GlobalEnv when processing object ‘sampleObj’ ** inst ** byte-compile and prepare package for lazy loading -Error: object ‘ewcdf’ is not exported by 'namespace:spatstat.geom' +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘gfilogisreg’ -* removing ‘/tmp/workdir/gfilogisreg/old/gfilogisreg.Rcheck/gfilogisreg’ +ERROR: lazy loading failed for package ‘GeneNMF’ +* removing ‘/tmp/workdir/GeneNMF/old/GeneNMF.Rcheck/GeneNMF’ ``` -# ggrcs +# GeneSelectR
-* Version: 0.4.0 -* GitHub: NA -* Source code: https://github.com/cran/ggrcs -* Date/Publication: 2024-06-29 02:40:02 UTC -* Number of recursive dependencies: 78 +* Version: 1.0.1 +* GitHub: https://github.com/dzhakparov/GeneSelectR +* Source code: https://github.com/cran/GeneSelectR +* Date/Publication: 2024-02-03 14:00:05 UTC +* Number of recursive dependencies: 191 -Run `revdepcheck::cloud_details(, "ggrcs")` for more info +Run `revdepcheck::cloud_details(, "GeneSelectR")` for more info
-## In both - -* checking whether package ‘ggrcs’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/ggrcs/new/ggrcs.Rcheck/00install.out’ for details. - ``` - -## Installation +## Error before installation ### Devel ``` -* installing *source* package ‘ggrcs’ ... -** package ‘ggrcs’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘ggrcs’ -* removing ‘/tmp/workdir/ggrcs/new/ggrcs.Rcheck/ggrcs’ +* using log directory ‘/tmp/workdir/GeneSelectR/new/GeneSelectR.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘GeneSelectR/DESCRIPTION’ ... OK +... ++ build_vignettes = FALSE) + + When sourcing ‘example.R’: +Error: there is no package called ‘devtools’ +Execution halted + + ‘example.Rmd’ using ‘UTF-8’... failed +* checking re-building of vignette outputs ... OK +* DONE +Status: 1 WARNING, 1 NOTE + + + ``` ### CRAN ``` -* installing *source* package ‘ggrcs’ ... -** package ‘ggrcs’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +* using log directory ‘/tmp/workdir/GeneSelectR/old/GeneSelectR.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘GeneSelectR/DESCRIPTION’ ... OK +... ++ build_vignettes = FALSE) + + When sourcing ‘example.R’: +Error: there is no package called ‘devtools’ Execution halted -ERROR: lazy loading failed for package ‘ggrcs’ -* removing ‘/tmp/workdir/ggrcs/old/ggrcs.Rcheck/ggrcs’ + + ‘example.Rmd’ using ‘UTF-8’... failed +* checking re-building of vignette outputs ... OK +* DONE +Status: 1 WARNING, 1 NOTE + + + + + +``` +# geomorph + +
+ +* Version: NA +* GitHub: NA +* Source code: https://github.com/cran/geomorph +* Number of recursive dependencies: 72 + +Run `revdepcheck::cloud_details(, "geomorph")` for more info + +
+ +## Error before installation + +### Devel + +``` + + + + + + +``` +### CRAN + +``` + + + + ``` @@ -4054,66 +4740,6 @@ ERROR: compilation failed for package ‘gpuR’ * removing ‘/tmp/workdir/gpuR/old/gpuR.Rcheck/gpuR’ -``` -# Greg - -
- -* Version: 2.0.2 -* GitHub: https://github.com/gforge/Greg -* Source code: https://github.com/cran/Greg -* Date/Publication: 2024-01-29 13:30:21 UTC -* Number of recursive dependencies: 151 - -Run `revdepcheck::cloud_details(, "Greg")` for more info - -
- -## In both - -* checking whether package ‘Greg’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/Greg/new/Greg.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘Greg’ ... -** package ‘Greg’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘Greg’ -* removing ‘/tmp/workdir/Greg/new/Greg.Rcheck/Greg’ - - -``` -### CRAN - -``` -* installing *source* package ‘Greg’ ... -** package ‘Greg’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘Greg’ -* removing ‘/tmp/workdir/Greg/old/Greg.Rcheck/Greg’ - - ``` # hettx @@ -4179,88 +4805,102 @@ ERROR: lazy loading failed for package ‘hettx’ ``` -# hIRT +# Hmisc
-* Version: 0.3.0 -* GitHub: https://github.com/xiangzhou09/hIRT -* Source code: https://github.com/cran/hIRT -* Date/Publication: 2020-03-26 17:10:02 UTC -* Number of recursive dependencies: 88 +* Version: 5.1-3 +* GitHub: NA +* Source code: https://github.com/cran/Hmisc +* Date/Publication: 2024-05-28 07:10:02 UTC +* Number of recursive dependencies: 170 -Run `revdepcheck::cloud_details(, "hIRT")` for more info +Run `revdepcheck::cloud_details(, "Hmisc")` for more info
-## In both - -* checking whether package ‘hIRT’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/hIRT/new/hIRT.Rcheck/00install.out’ for details. - ``` - -## Installation +## Error before installation ### Devel ``` -* installing *source* package ‘hIRT’ ... -** package ‘hIRT’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘hIRT’ -* removing ‘/tmp/workdir/hIRT/new/hIRT.Rcheck/hIRT’ +* using log directory ‘/tmp/workdir/Hmisc/new/Hmisc.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘Hmisc/DESCRIPTION’ ... OK +... +* checking for missing documentation entries ... OK +* checking for code/documentation mismatches ... OK +* checking Rd \usage sections ... OK +* checking Rd contents ... OK +* checking for unstated dependencies in examples ... OK +* checking line endings in C/C++/Fortran sources/headers ... OK +* checking compiled code ... OK +* checking examples ... OK +* DONE +Status: 4 NOTEs + + + ``` ### CRAN ``` -* installing *source* package ‘hIRT’ ... -** package ‘hIRT’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘hIRT’ -* removing ‘/tmp/workdir/hIRT/old/hIRT.Rcheck/hIRT’ +* using log directory ‘/tmp/workdir/Hmisc/old/Hmisc.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘Hmisc/DESCRIPTION’ ... OK +... +* checking for missing documentation entries ... OK +* checking for code/documentation mismatches ... OK +* checking Rd \usage sections ... OK +* checking Rd contents ... OK +* checking for unstated dependencies in examples ... OK +* checking line endings in C/C++/Fortran sources/headers ... OK +* checking compiled code ... OK +* checking examples ... OK +* DONE +Status: 4 NOTEs + + + ``` -# interactionRCS +# iClusterVB
-* Version: 0.1.1 -* GitHub: NA -* Source code: https://github.com/cran/interactionRCS -* Date/Publication: 2023-11-21 22:40:02 UTC -* Number of recursive dependencies: 91 +* Version: 0.1.2 +* GitHub: https://github.com/AbdalkarimA/iClusterVB +* Source code: https://github.com/cran/iClusterVB +* Date/Publication: 2024-08-20 19:10:02 UTC +* Number of recursive dependencies: 127 -Run `revdepcheck::cloud_details(, "interactionRCS")` for more info +Run `revdepcheck::cloud_details(, "iClusterVB")` for more info
## In both -* checking whether package ‘interactionRCS’ can be installed ... ERROR +* checking whether package ‘iClusterVB’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/interactionRCS/new/interactionRCS.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/iClusterVB/new/iClusterVB.Rcheck/00install.out’ for details. ``` ## Installation @@ -4268,10 +4908,17 @@ Run `revdepcheck::cloud_details(, "interactionRCS")` for more info ### Devel ``` -* installing *source* package ‘interactionRCS’ ... -** package ‘interactionRCS’ successfully unpacked and MD5 sums checked +* installing *source* package ‘iClusterVB’ ... +** package ‘iClusterVB’ successfully unpacked and MD5 sums checked ** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c CAVI_algorithms.cpp -o CAVI_algorithms.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o iClusterVB.so CAVI_algorithms.o RcppExports.o -fopenmp -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR +installing to /tmp/workdir/iClusterVB/new/iClusterVB.Rcheck/00LOCK-iClusterVB/00new/iClusterVB/libs ** R +... ** data *** moving datasets to lazyload DB ** inst @@ -4280,18 +4927,25 @@ Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[ namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘interactionRCS’ -* removing ‘/tmp/workdir/interactionRCS/new/interactionRCS.Rcheck/interactionRCS’ +ERROR: lazy loading failed for package ‘iClusterVB’ +* removing ‘/tmp/workdir/iClusterVB/new/iClusterVB.Rcheck/iClusterVB’ ``` ### CRAN ``` -* installing *source* package ‘interactionRCS’ ... -** package ‘interactionRCS’ successfully unpacked and MD5 sums checked +* installing *source* package ‘iClusterVB’ ... +** package ‘iClusterVB’ successfully unpacked and MD5 sums checked ** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c CAVI_algorithms.cpp -o CAVI_algorithms.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o iClusterVB.so CAVI_algorithms.o RcppExports.o -fopenmp -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR +installing to /tmp/workdir/iClusterVB/old/iClusterVB.Rcheck/00LOCK-iClusterVB/00new/iClusterVB/libs ** R +... ** data *** moving datasets to lazyload DB ** inst @@ -4300,8 +4954,8 @@ Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[ namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘interactionRCS’ -* removing ‘/tmp/workdir/interactionRCS/old/interactionRCS.Rcheck/interactionRCS’ +ERROR: lazy loading failed for package ‘iClusterVB’ +* removing ‘/tmp/workdir/iClusterVB/old/iClusterVB.Rcheck/iClusterVB’ ``` @@ -4595,26 +5249,26 @@ ERROR: lazy loading failed for package ‘joineRML’ ``` -# JWileymisc +# kdml
-* Version: 1.4.1 -* GitHub: https://github.com/JWiley/JWileymisc -* Source code: https://github.com/cran/JWileymisc -* Date/Publication: 2023-10-05 04:50:02 UTC -* Number of recursive dependencies: 167 +* Version: 1.0.0 +* GitHub: NA +* Source code: https://github.com/cran/kdml +* Date/Publication: 2024-08-27 11:30:05 UTC +* Number of recursive dependencies: 40 -Run `revdepcheck::cloud_details(, "JWileymisc")` for more info +Run `revdepcheck::cloud_details(, "kdml")` for more info
## In both -* checking whether package ‘JWileymisc’ can be installed ... ERROR +* checking whether package ‘kdml’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/JWileymisc/new/JWileymisc.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/kdml/new/kdml.Rcheck/00install.out’ for details. ``` ## Installation @@ -4622,99 +5276,194 @@ Run `revdepcheck::cloud_details(, "JWileymisc")` for more info ### Devel ``` -* installing *source* package ‘JWileymisc’ ... -** package ‘JWileymisc’ successfully unpacked and MD5 sums checked +* installing *source* package ‘kdml’ ... +** package ‘kdml’ successfully unpacked and MD5 sums checked ** using staged installation ** R -** data -*** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading -Warning in check_dep_version() : - ABI version mismatch: -lme4 was built with Matrix ABI version 1 -Current Matrix ABI version is 0 -Please re-install lme4 from source or restore original ‘Matrix’ package -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Error: package or namespace load failed for ‘np’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Execution halted -ERROR: lazy loading failed for package ‘JWileymisc’ -* removing ‘/tmp/workdir/JWileymisc/new/JWileymisc.Rcheck/JWileymisc’ +ERROR: lazy loading failed for package ‘kdml’ +* removing ‘/tmp/workdir/kdml/new/kdml.Rcheck/kdml’ ``` ### CRAN ``` -* installing *source* package ‘JWileymisc’ ... -** package ‘JWileymisc’ successfully unpacked and MD5 sums checked +* installing *source* package ‘kdml’ ... +** package ‘kdml’ successfully unpacked and MD5 sums checked ** using staged installation ** R -** data -*** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading -Warning in check_dep_version() : - ABI version mismatch: -lme4 was built with Matrix ABI version 1 -Current Matrix ABI version is 0 -Please re-install lme4 from source or restore original ‘Matrix’ package -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Error: package or namespace load failed for ‘np’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Execution halted -ERROR: lazy loading failed for package ‘JWileymisc’ -* removing ‘/tmp/workdir/JWileymisc/old/JWileymisc.Rcheck/JWileymisc’ +ERROR: lazy loading failed for package ‘kdml’ +* removing ‘/tmp/workdir/kdml/old/kdml.Rcheck/kdml’ ``` -# L2E +# kibior
-* Version: 2.0 -* GitHub: NA -* Source code: https://github.com/cran/L2E -* Date/Publication: 2022-09-08 21:13:00 UTC -* Number of recursive dependencies: 65 +* Version: 0.1.1 +* GitHub: https://github.com/regisoc/kibior +* Source code: https://github.com/cran/kibior +* Date/Publication: 2021-01-28 15:20:02 UTC +* Number of recursive dependencies: 140 -Run `revdepcheck::cloud_details(, "L2E")` for more info +Run `revdepcheck::cloud_details(, "kibior")` for more info
-## In both - -* checking whether package ‘L2E’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/L2E/new/L2E.Rcheck/00install.out’ for details. - ``` - -## Installation +## Error before installation ### Devel ``` -* installing *source* package ‘L2E’ ... -** package ‘L2E’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘osqp’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is being loaded, but >= 1.6.1 is required -Execution halted -ERROR: lazy loading failed for package ‘L2E’ -* removing ‘/tmp/workdir/L2E/new/L2E.Rcheck/L2E’ - - -``` -### CRAN - -``` +* using log directory ‘/tmp/workdir/kibior/new/kibior.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘kibior/DESCRIPTION’ ... OK +... +* this is package ‘kibior’ version ‘0.1.1’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package required but not available: ‘rtracklayer’ + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +### CRAN + +``` +* using log directory ‘/tmp/workdir/kibior/old/kibior.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘kibior/DESCRIPTION’ ... OK +... +* this is package ‘kibior’ version ‘0.1.1’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package required but not available: ‘rtracklayer’ + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +# kstMatrix + +
+ +* Version: NA +* GitHub: NA +* Source code: https://github.com/cran/kstMatrix +* Number of recursive dependencies: 35 + +Run `revdepcheck::cloud_details(, "kstMatrix")` for more info + +
+ +## Error before installation + +### Devel + +``` + + + + + + +``` +### CRAN + +``` + + + + + + +``` +# L2E + +
+ +* Version: 2.0 +* GitHub: NA +* Source code: https://github.com/cran/L2E +* Date/Publication: 2022-09-08 21:13:00 UTC +* Number of recursive dependencies: 65 + +Run `revdepcheck::cloud_details(, "L2E")` for more info + +
+ +## In both + +* checking whether package ‘L2E’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/L2E/new/L2E.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘L2E’ ... +** package ‘L2E’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘osqp’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): + namespace ‘Matrix’ 1.5-4.1 is being loaded, but >= 1.6.1 is required +Execution halted +ERROR: lazy loading failed for package ‘L2E’ +* removing ‘/tmp/workdir/L2E/new/L2E.Rcheck/L2E’ + + +``` +### CRAN + +``` * installing *source* package ‘L2E’ ... ** package ‘L2E’ successfully unpacked and MD5 sums checked ** using staged installation @@ -4794,6 +5543,158 @@ ERROR: lazy loading failed for package ‘lchemix’ * removing ‘/tmp/workdir/lchemix/old/lchemix.Rcheck/lchemix’ +``` +# ldsep + +
+ +* Version: 2.1.5 +* GitHub: https://github.com/dcgerard/ldsep +* Source code: https://github.com/cran/ldsep +* Date/Publication: 2022-10-18 22:52:43 UTC +* Number of recursive dependencies: 161 + +Run `revdepcheck::cloud_details(, "ldsep")` for more info + +
+ +## Error before installation + +### Devel + +``` +* using log directory ‘/tmp/workdir/ldsep/new/ldsep.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘ldsep/DESCRIPTION’ ... OK +... + + When sourcing ‘vcf.R’: +Error: there is no package called ‘VariantAnnotation’ +Execution halted + + ‘fast.Rmd’ using ‘UTF-8’... OK + ‘vcf.Rmd’ using ‘UTF-8’... failed +* checking re-building of vignette outputs ... OK +* DONE +Status: 1 WARNING, 3 NOTEs + + + + + +``` +### CRAN + +``` +* using log directory ‘/tmp/workdir/ldsep/old/ldsep.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘ldsep/DESCRIPTION’ ... OK +... + + When sourcing ‘vcf.R’: +Error: there is no package called ‘VariantAnnotation’ +Execution halted + + ‘fast.Rmd’ using ‘UTF-8’... OK + ‘vcf.Rmd’ using ‘UTF-8’... failed +* checking re-building of vignette outputs ... OK +* DONE +Status: 1 WARNING, 3 NOTEs + + + + + +``` +# locuszoomr + +
+ +* Version: 0.3.2 +* GitHub: https://github.com/myles-lewis/locuszoomr +* Source code: https://github.com/cran/locuszoomr +* Date/Publication: 2024-08-19 15:10:02 UTC +* Number of recursive dependencies: 132 + +Run `revdepcheck::cloud_details(, "locuszoomr")` for more info + +
+ +## Error before installation + +### Devel + +``` +* using log directory ‘/tmp/workdir/locuszoomr/new/locuszoomr.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘locuszoomr/DESCRIPTION’ ... OK +... +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Packages required but not available: 'ensembldb', 'rtracklayer' + +Package suggested but not available for checking: ‘EnsDb.Hsapiens.v75’ + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +### CRAN + +``` +* using log directory ‘/tmp/workdir/locuszoomr/old/locuszoomr.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘locuszoomr/DESCRIPTION’ ... OK +... +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Packages required but not available: 'ensembldb', 'rtracklayer' + +Package suggested but not available for checking: ‘EnsDb.Hsapiens.v75’ + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + ``` # loon.shiny @@ -5029,10 +5930,10 @@ ERROR: lazy loading failed for package ‘LorenzRegression’
-* Version: 1.3.1 +* Version: 1.3.3 * GitHub: NA * Source code: https://github.com/cran/lsirm12pl -* Date/Publication: 2023-06-22 14:12:35 UTC +* Date/Publication: 2024-08-28 23:00:02 UTC * Number of recursive dependencies: 124 Run `revdepcheck::cloud_details(, "lsirm12pl")` for more info @@ -5058,10 +5959,10 @@ Run `revdepcheck::cloud_details(, "lsirm12pl")` for more info ** libs using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c log_likelihood.cpp -o log_likelihood.o g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c lsirm1pl.cpp -o lsirm1pl.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c lsirm1pl_fixed_gamma.cpp -o lsirm1pl_fixed_gamma.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c lsirm1pl_fixed_gamma_mar.cpp -o lsirm1pl_fixed_gamma_mar.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c lsirm2pl.cpp -o lsirm2pl.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c lsm.cpp -o lsm.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c utility_cpp.cpp -o utility_cpp.o ... ** R ** data @@ -5085,10 +5986,10 @@ ERROR: lazy loading failed for package ‘lsirm12pl’ ** libs using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c log_likelihood.cpp -o log_likelihood.o g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c lsirm1pl.cpp -o lsirm1pl.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c lsirm1pl_fixed_gamma.cpp -o lsirm1pl_fixed_gamma.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c lsirm1pl_fixed_gamma_mar.cpp -o lsirm1pl_fixed_gamma_mar.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c lsirm2pl.cpp -o lsirm2pl.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c lsm.cpp -o lsm.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c utility_cpp.cpp -o utility_cpp.o ... ** R ** data @@ -5103,26 +6004,102 @@ ERROR: lazy loading failed for package ‘lsirm12pl’ ``` -# MBmca +# MAAPER
-* Version: 1.0.1-3 -* GitHub: https://github.com/PCRuniversum/MBmca -* Source code: https://github.com/cran/MBmca -* Date/Publication: 2021-09-03 12:40:08 UTC -* Number of recursive dependencies: 58 +* Version: 1.1.1 +* GitHub: https://github.com/Vivianstats/MAAPER +* Source code: https://github.com/cran/MAAPER +* Date/Publication: 2021-08-14 14:20:05 UTC +* Number of recursive dependencies: 84 -Run `revdepcheck::cloud_details(, "MBmca")` for more info +Run `revdepcheck::cloud_details(, "MAAPER")` for more info
-## In both +## Error before installation -* checking whether package ‘MBmca’ can be installed ... ERROR +### Devel + +``` +* using log directory ‘/tmp/workdir/MAAPER/new/MAAPER.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘MAAPER/DESCRIPTION’ ... OK +... +* this is package ‘MAAPER’ version ‘1.1.1’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package required but not available: ‘GenomicFeatures’ + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +### CRAN + +``` +* using log directory ‘/tmp/workdir/MAAPER/old/MAAPER.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘MAAPER/DESCRIPTION’ ... OK +... +* this is package ‘MAAPER’ version ‘1.1.1’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package required but not available: ‘GenomicFeatures’ + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +# marlod + +
+ +* Version: 0.1.1 +* GitHub: NA +* Source code: https://github.com/cran/marlod +* Date/Publication: 2024-08-27 22:00:02 UTC +* Number of recursive dependencies: 107 + +Run `revdepcheck::cloud_details(, "marlod")` for more info + +
+ +## In both + +* checking whether package ‘marlod’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/MBmca/new/MBmca.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/marlod/new/marlod.Rcheck/00install.out’ for details. ``` ## Installation @@ -5130,8 +6107,8 @@ Run `revdepcheck::cloud_details(, "MBmca")` for more info ### Devel ``` -* installing *source* package ‘MBmca’ ... -** package ‘MBmca’ successfully unpacked and MD5 sums checked +* installing *source* package ‘marlod’ ... +** package ‘marlod’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data @@ -5142,16 +6119,16 @@ Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[ namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘MBmca’ -* removing ‘/tmp/workdir/MBmca/new/MBmca.Rcheck/MBmca’ +ERROR: lazy loading failed for package ‘marlod’ +* removing ‘/tmp/workdir/marlod/new/marlod.Rcheck/marlod’ ``` ### CRAN ``` -* installing *source* package ‘MBmca’ ... -** package ‘MBmca’ successfully unpacked and MD5 sums checked +* installing *source* package ‘marlod’ ... +** package ‘marlod’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data @@ -5162,31 +6139,107 @@ Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[ namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘MBmca’ -* removing ‘/tmp/workdir/MBmca/old/MBmca.Rcheck/MBmca’ +ERROR: lazy loading failed for package ‘marlod’ +* removing ‘/tmp/workdir/marlod/old/marlod.Rcheck/marlod’ ``` -# mbsts +# MARVEL
-* Version: 3.0 +* Version: 1.4.0 * GitHub: NA -* Source code: https://github.com/cran/mbsts -* Date/Publication: 2023-01-07 01:10:02 UTC -* Number of recursive dependencies: 82 +* Source code: https://github.com/cran/MARVEL +* Date/Publication: 2022-10-31 10:22:50 UTC +* Number of recursive dependencies: 231 -Run `revdepcheck::cloud_details(, "mbsts")` for more info +Run `revdepcheck::cloud_details(, "MARVEL")` for more info + +
+ +## Error before installation + +### Devel + +``` +* using log directory ‘/tmp/workdir/MARVEL/new/MARVEL.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘MARVEL/DESCRIPTION’ ... OK +... +* checking installed files from ‘inst/doc’ ... OK +* checking files in ‘vignettes’ ... OK +* checking examples ... OK +* checking for unstated dependencies in vignettes ... OK +* checking package vignettes in ‘inst/doc’ ... OK +* checking running R code from vignettes ... OK + ‘MARVEL.Rmd’ using ‘UTF-8’... OK +* checking re-building of vignette outputs ... OK +* DONE +Status: 1 NOTE + + + + + +``` +### CRAN + +``` +* using log directory ‘/tmp/workdir/MARVEL/old/MARVEL.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘MARVEL/DESCRIPTION’ ... OK +... +* checking installed files from ‘inst/doc’ ... OK +* checking files in ‘vignettes’ ... OK +* checking examples ... OK +* checking for unstated dependencies in vignettes ... OK +* checking package vignettes in ‘inst/doc’ ... OK +* checking running R code from vignettes ... OK + ‘MARVEL.Rmd’ using ‘UTF-8’... OK +* checking re-building of vignette outputs ... OK +* DONE +Status: 1 NOTE + + + + + +``` +# MBmca + +
+ +* Version: 1.0.1-3 +* GitHub: https://github.com/PCRuniversum/MBmca +* Source code: https://github.com/cran/MBmca +* Date/Publication: 2021-09-03 12:40:08 UTC +* Number of recursive dependencies: 58 + +Run `revdepcheck::cloud_details(, "MBmca")` for more info
## In both -* checking whether package ‘mbsts’ can be installed ... ERROR +* checking whether package ‘MBmca’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/mbsts/new/mbsts.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/MBmca/new/MBmca.Rcheck/00install.out’ for details. ``` ## Installation @@ -5194,59 +6247,63 @@ Run `revdepcheck::cloud_details(, "mbsts")` for more info ### Devel ``` -* installing *source* package ‘mbsts’ ... -** package ‘mbsts’ successfully unpacked and MD5 sums checked +* installing *source* package ‘MBmca’ ... +** package ‘MBmca’ successfully unpacked and MD5 sums checked ** using staged installation ** R +** data +*** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘mbsts’ -* removing ‘/tmp/workdir/mbsts/new/mbsts.Rcheck/mbsts’ +ERROR: lazy loading failed for package ‘MBmca’ +* removing ‘/tmp/workdir/MBmca/new/MBmca.Rcheck/MBmca’ ``` ### CRAN ``` -* installing *source* package ‘mbsts’ ... -** package ‘mbsts’ successfully unpacked and MD5 sums checked +* installing *source* package ‘MBmca’ ... +** package ‘MBmca’ successfully unpacked and MD5 sums checked ** using staged installation ** R +** data +*** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘mbsts’ -* removing ‘/tmp/workdir/mbsts/old/mbsts.Rcheck/mbsts’ +ERROR: lazy loading failed for package ‘MBmca’ +* removing ‘/tmp/workdir/MBmca/old/MBmca.Rcheck/MBmca’ ``` -# MendelianRandomization +# mbsts
-* Version: 0.10.0 +* Version: 3.0 * GitHub: NA -* Source code: https://github.com/cran/MendelianRandomization -* Date/Publication: 2024-04-12 10:10:02 UTC -* Number of recursive dependencies: 88 +* Source code: https://github.com/cran/mbsts +* Date/Publication: 2023-01-07 01:10:02 UTC +* Number of recursive dependencies: 82 -Run `revdepcheck::cloud_details(, "MendelianRandomization")` for more info +Run `revdepcheck::cloud_details(, "mbsts")` for more info
## In both -* checking whether package ‘MendelianRandomization’ can be installed ... ERROR +* checking whether package ‘mbsts’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/MendelianRandomization/new/MendelianRandomization.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/mbsts/new/mbsts.Rcheck/00install.out’ for details. ``` ## Installation @@ -5254,15 +6311,9 @@ Run `revdepcheck::cloud_details(, "MendelianRandomization")` for more info ### Devel ``` -* installing *source* package ‘MendelianRandomization’ ... -** package ‘MendelianRandomization’ successfully unpacked and MD5 sums checked +* installing *source* package ‘mbsts’ ... +** package ‘mbsts’ successfully unpacked and MD5 sums checked ** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c mvmrcML.cpp -o mvmrcML.o -g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o MendelianRandomization.so RcppExports.o mvmrcML.o -fopenmp -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/MendelianRandomization/new/MendelianRandomization.Rcheck/00LOCK-MendelianRandomization/00new/MendelianRandomization/libs ** R ** inst ** byte-compile and prepare package for lazy loading @@ -5270,23 +6321,17 @@ Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[ namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘MendelianRandomization’ -* removing ‘/tmp/workdir/MendelianRandomization/new/MendelianRandomization.Rcheck/MendelianRandomization’ +ERROR: lazy loading failed for package ‘mbsts’ +* removing ‘/tmp/workdir/mbsts/new/mbsts.Rcheck/mbsts’ ``` ### CRAN ``` -* installing *source* package ‘MendelianRandomization’ ... -** package ‘MendelianRandomization’ successfully unpacked and MD5 sums checked +* installing *source* package ‘mbsts’ ... +** package ‘mbsts’ successfully unpacked and MD5 sums checked ** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c mvmrcML.cpp -o mvmrcML.o -g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o MendelianRandomization.so RcppExports.o mvmrcML.o -fopenmp -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/MendelianRandomization/old/MendelianRandomization.Rcheck/00LOCK-MendelianRandomization/00new/MendelianRandomization/libs ** R ** inst ** byte-compile and prepare package for lazy loading @@ -5294,72 +6339,84 @@ Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[ namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘MendelianRandomization’ -* removing ‘/tmp/workdir/MendelianRandomization/old/MendelianRandomization.Rcheck/MendelianRandomization’ +ERROR: lazy loading failed for package ‘mbsts’ +* removing ‘/tmp/workdir/mbsts/old/mbsts.Rcheck/mbsts’ ``` -# MetabolicSurv +# Mega2R
-* Version: 1.1.2 -* GitHub: https://github.com/OlajumokeEvangelina/MetabolicSurv -* Source code: https://github.com/cran/MetabolicSurv -* Date/Publication: 2021-06-11 08:30:02 UTC -* Number of recursive dependencies: 131 +* Version: 1.1.0 +* GitHub: NA +* Source code: https://github.com/cran/Mega2R +* Date/Publication: 2023-12-21 22:40:10 UTC +* Number of recursive dependencies: 105 -Run `revdepcheck::cloud_details(, "MetabolicSurv")` for more info +Run `revdepcheck::cloud_details(, "Mega2R")` for more info
-## In both - -* checking whether package ‘MetabolicSurv’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/MetabolicSurv/new/MetabolicSurv.Rcheck/00install.out’ for details. - ``` - -## Installation +## Error before installation ### Devel ``` -* installing *source* package ‘MetabolicSurv’ ... -** package ‘MetabolicSurv’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘MetabolicSurv’ -* removing ‘/tmp/workdir/MetabolicSurv/new/MetabolicSurv.Rcheck/MetabolicSurv’ +* using log directory ‘/tmp/workdir/Mega2R/new/Mega2R.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘Mega2R/DESCRIPTION’ ... OK +... +* checking installed files from ‘inst/doc’ ... OK +* checking files in ‘vignettes’ ... OK +* checking examples ... OK +* checking for unstated dependencies in vignettes ... OK +* checking package vignettes in ‘inst/doc’ ... OK +* checking running R code from vignettes ... OK + ‘mega2rtutorial.Rmd’ using ‘UTF-8’... OK +* checking re-building of vignette outputs ... OK +* DONE +Status: 1 NOTE + + + ``` ### CRAN ``` -* installing *source* package ‘MetabolicSurv’ ... -** package ‘MetabolicSurv’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘MetabolicSurv’ -* removing ‘/tmp/workdir/MetabolicSurv/old/MetabolicSurv.Rcheck/MetabolicSurv’ +* using log directory ‘/tmp/workdir/Mega2R/old/Mega2R.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘Mega2R/DESCRIPTION’ ... OK +... +* checking installed files from ‘inst/doc’ ... OK +* checking files in ‘vignettes’ ... OK +* checking examples ... OK +* checking for unstated dependencies in vignettes ... OK +* checking package vignettes in ‘inst/doc’ ... OK +* checking running R code from vignettes ... OK + ‘mega2rtutorial.Rmd’ using ‘UTF-8’... OK +* checking re-building of vignette outputs ... OK +* DONE +Status: 1 NOTE + + + ``` @@ -5367,10 +6424,10 @@ ERROR: lazy loading failed for package ‘MetabolicSurv’
-* Version: 0.3.0 -* GitHub: https://github.com/nceas/metajam +* Version: 0.3.1 +* GitHub: https://github.com/NCEAS/metajam * Source code: https://github.com/cran/metajam -* Date/Publication: 2024-07-03 07:20:05 UTC +* Date/Publication: 2024-08-16 17:50:02 UTC * Number of recursive dependencies: 91 Run `revdepcheck::cloud_details(, "metajam")` for more info @@ -5503,67 +6560,79 @@ ERROR: lazy loading failed for package ‘mHMMbayes’ ``` -# miceafter +# MicroSEC
-* Version: 0.5.0 -* GitHub: https://github.com/mwheymans/miceafter -* Source code: https://github.com/cran/miceafter -* Date/Publication: 2022-10-02 13:30:02 UTC -* Number of recursive dependencies: 140 +* Version: 2.1.6 +* GitHub: https://github.com/MANO-B/MicroSEC +* Source code: https://github.com/cran/MicroSEC +* Date/Publication: 2024-08-25 07:50:05 UTC +* Number of recursive dependencies: 88 -Run `revdepcheck::cloud_details(, "miceafter")` for more info +Run `revdepcheck::cloud_details(, "MicroSEC")` for more info
-## In both - -* checking whether package ‘miceafter’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/miceafter/new/miceafter.Rcheck/00install.out’ for details. - ``` - -## Installation +## Error before installation ### Devel ``` -* installing *source* package ‘miceafter’ ... -** package ‘miceafter’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +* using log directory ‘/tmp/workdir/MicroSEC/new/MicroSEC.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘MicroSEC/DESCRIPTION’ ... OK +... +there is no package called 'BSgenome.Hsapiens.UCSC.hg38' +--- failed re-building ‘my-vignette.Rmd’ + +SUMMARY: processing the following file failed: + ‘my-vignette.Rmd’ + Execution halted -ERROR: lazy loading failed for package ‘miceafter’ -* removing ‘/tmp/workdir/miceafter/new/miceafter.Rcheck/miceafter’ + +* DONE +Status: 2 ERRORs, 2 NOTEs + + + ``` ### CRAN ``` -* installing *source* package ‘miceafter’ ... -** package ‘miceafter’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +* using log directory ‘/tmp/workdir/MicroSEC/old/MicroSEC.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘MicroSEC/DESCRIPTION’ ... OK +... +there is no package called 'BSgenome.Hsapiens.UCSC.hg38' +--- failed re-building ‘my-vignette.Rmd’ + +SUMMARY: processing the following file failed: + ‘my-vignette.Rmd’ + Execution halted -ERROR: lazy loading failed for package ‘miceafter’ -* removing ‘/tmp/workdir/miceafter/old/miceafter.Rcheck/miceafter’ + +* DONE +Status: 2 ERRORs, 2 NOTEs + + + ``` @@ -5630,6 +6699,82 @@ ERROR: lazy loading failed for package ‘MiRKAT’ * removing ‘/tmp/workdir/MiRKAT/old/MiRKAT.Rcheck/MiRKAT’ +``` +# MitoHEAR + +
+ +* Version: 0.1.0 +* GitHub: NA +* Source code: https://github.com/cran/MitoHEAR +* Date/Publication: 2022-03-01 21:20:02 UTC +* Number of recursive dependencies: 183 + +Run `revdepcheck::cloud_details(, "MitoHEAR")` for more info + +
+ +## Error before installation + +### Devel + +``` +* using log directory ‘/tmp/workdir/MitoHEAR/new/MitoHEAR.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘MitoHEAR/DESCRIPTION’ ... OK +... +* checking package dependencies ... ERROR +Package required but not available: ‘ComplexHeatmap’ + +Packages suggested but not available for checking: + 'karyoploteR', 'regioneR' + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +### CRAN + +``` +* using log directory ‘/tmp/workdir/MitoHEAR/old/MitoHEAR.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘MitoHEAR/DESCRIPTION’ ... OK +... +* checking package dependencies ... ERROR +Package required but not available: ‘ComplexHeatmap’ + +Packages suggested but not available for checking: + 'karyoploteR', 'regioneR' + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + ``` # miWQS @@ -5639,7 +6784,7 @@ ERROR: lazy loading failed for package ‘MiRKAT’ * GitHub: https://github.com/phargarten2/miWQS * Source code: https://github.com/cran/miWQS * Date/Publication: 2021-04-02 21:50:02 UTC -* Number of recursive dependencies: 151 +* Number of recursive dependencies: 152 Run `revdepcheck::cloud_details(, "miWQS")` for more info @@ -5695,145 +6840,315 @@ ERROR: lazy loading failed for package ‘miWQS’ ``` -# mlt.docreg +# MLML2R
-* Version: 1.1-8 -* GitHub: NA -* Source code: https://github.com/cran/mlt.docreg -* Date/Publication: 2024-04-29 13:40:02 UTC -* Number of recursive dependencies: 152 +* Version: 0.3.3 +* GitHub: https://github.com/samarafk/MLML2R +* Source code: https://github.com/cran/MLML2R +* Date/Publication: 2019-10-17 19:30:02 UTC +* Number of recursive dependencies: 146 -Run `revdepcheck::cloud_details(, "mlt.docreg")` for more info +Run `revdepcheck::cloud_details(, "MLML2R")` for more info
-## In both - -* checking whether package ‘mlt.docreg’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/mlt.docreg/new/mlt.docreg.Rcheck/00install.out’ for details. - ``` - -## Installation +## Error before installation ### Devel ``` -* installing *source* package ‘mlt.docreg’ ... -** package ‘mlt.docreg’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘mlt’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - there is no package called ‘coneproj’ -Execution halted -ERROR: lazy loading failed for package ‘mlt.docreg’ -* removing ‘/tmp/workdir/mlt.docreg/new/mlt.docreg.Rcheck/mlt.docreg’ +* using log directory ‘/tmp/workdir/MLML2R/new/MLML2R.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘MLML2R/DESCRIPTION’ ... OK +... +* checking installed files from ‘inst/doc’ ... OK +* checking files in ‘vignettes’ ... OK +* checking examples ... OK +* checking for unstated dependencies in vignettes ... OK +* checking package vignettes in ‘inst/doc’ ... OK +* checking running R code from vignettes ... OK + ‘vignette.Rmd’ using ‘UTF-8’... OK +* checking re-building of vignette outputs ... OK +* DONE +Status: 1 NOTE + + + ``` ### CRAN ``` -* installing *source* package ‘mlt.docreg’ ... -** package ‘mlt.docreg’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘mlt’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - there is no package called ‘coneproj’ -Execution halted -ERROR: lazy loading failed for package ‘mlt.docreg’ -* removing ‘/tmp/workdir/mlt.docreg/old/mlt.docreg.Rcheck/mlt.docreg’ +* using log directory ‘/tmp/workdir/MLML2R/old/MLML2R.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘MLML2R/DESCRIPTION’ ... OK +... +* checking installed files from ‘inst/doc’ ... OK +* checking files in ‘vignettes’ ... OK +* checking examples ... OK +* checking for unstated dependencies in vignettes ... OK +* checking package vignettes in ‘inst/doc’ ... OK +* checking running R code from vignettes ... OK + ‘vignette.Rmd’ using ‘UTF-8’... OK +* checking re-building of vignette outputs ... OK +* DONE +Status: 1 NOTE + + + ``` -# modeLLtest +# mlt.docreg
-* Version: 1.0.4 -* GitHub: https://github.com/ShanaScogin/modeLLtest -* Source code: https://github.com/cran/modeLLtest -* Date/Publication: 2022-05-05 23:20:17 UTC -* Number of recursive dependencies: 58 +* Version: 1.1-8 +* GitHub: NA +* Source code: https://github.com/cran/mlt.docreg +* Date/Publication: 2024-04-29 13:40:02 UTC +* Number of recursive dependencies: 152 -Run `revdepcheck::cloud_details(, "modeLLtest")` for more info +Run `revdepcheck::cloud_details(, "mlt.docreg")` for more info
-## In both - -* checking whether package ‘modeLLtest’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/modeLLtest/new/modeLLtest.Rcheck/00install.out’ for details. - ``` - -## Installation +## Error before installation ### Devel ``` -* installing *source* package ‘modeLLtest’ ... -** package ‘modeLLtest’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ -using C++11 -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c cvll_mr.cpp -o cvll_mr.o -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c cvll_ols.cpp -o cvll_ols.o -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c cvll_rlm_m.cpp -o cvll_rlm_m.o +* using log directory ‘/tmp/workdir/mlt.docreg/new/mlt.docreg.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘mlt.docreg/DESCRIPTION’ ... OK ... -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘modeLLtest’ -* removing ‘/tmp/workdir/modeLLtest/new/modeLLtest.Rcheck/modeLLtest’ +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package required but not available: ‘mlt’ + +Packages suggested but not available for checking: 'tram', 'rms' + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + ``` ### CRAN ``` -* installing *source* package ‘modeLLtest’ ... -** package ‘modeLLtest’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ -using C++11 -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c cvll_mr.cpp -o cvll_mr.o -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c cvll_ols.cpp -o cvll_ols.o -g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c cvll_rlm_m.cpp -o cvll_rlm_m.o +* using log directory ‘/tmp/workdir/mlt.docreg/old/mlt.docreg.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘mlt.docreg/DESCRIPTION’ ... OK ... -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘modeLLtest’ -* removing ‘/tmp/workdir/modeLLtest/old/modeLLtest.Rcheck/modeLLtest’ - +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package required but not available: ‘mlt’ -``` -# MRZero +Packages suggested but not available for checking: 'tram', 'rms' -
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +# MOCHA + +
+ +* Version: 1.1.0 +* GitHub: NA +* Source code: https://github.com/cran/MOCHA +* Date/Publication: 2024-01-25 12:20:12 UTC +* Number of recursive dependencies: 249 + +Run `revdepcheck::cloud_details(, "MOCHA")` for more info + +
+ +## Error before installation + +### Devel + +``` +* using log directory ‘/tmp/workdir/MOCHA/new/MOCHA.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘MOCHA/DESCRIPTION’ ... OK +... + +Packages suggested but not available for checking: + 'ArchR', 'motifmatchr', 'TxDb.Hsapiens.UCSC.hg38.refGene', + 'TxDb.Hsapiens.UCSC.hg19.knownGene', 'BSgenome.Hsapiens.UCSC.hg19', + 'chromVAR', 'rtracklayer' + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +### CRAN + +``` +* using log directory ‘/tmp/workdir/MOCHA/old/MOCHA.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘MOCHA/DESCRIPTION’ ... OK +... + +Packages suggested but not available for checking: + 'ArchR', 'motifmatchr', 'TxDb.Hsapiens.UCSC.hg38.refGene', + 'TxDb.Hsapiens.UCSC.hg19.knownGene', 'BSgenome.Hsapiens.UCSC.hg19', + 'chromVAR', 'rtracklayer' + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +# modeLLtest + +
+ +* Version: 1.0.4 +* GitHub: https://github.com/ShanaScogin/modeLLtest +* Source code: https://github.com/cran/modeLLtest +* Date/Publication: 2022-05-05 23:20:17 UTC +* Number of recursive dependencies: 58 + +Run `revdepcheck::cloud_details(, "modeLLtest")` for more info + +
+ +## In both + +* checking whether package ‘modeLLtest’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/modeLLtest/new/modeLLtest.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘modeLLtest’ ... +** package ‘modeLLtest’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +using C++11 +g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c cvll_mr.cpp -o cvll_mr.o +g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c cvll_ols.cpp -o cvll_ols.o +g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c cvll_rlm_m.cpp -o cvll_rlm_m.o +... +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘modeLLtest’ +* removing ‘/tmp/workdir/modeLLtest/new/modeLLtest.Rcheck/modeLLtest’ + + +``` +### CRAN + +``` +* installing *source* package ‘modeLLtest’ ... +** package ‘modeLLtest’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +using C++11 +g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c cvll_mr.cpp -o cvll_mr.o +g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c cvll_ols.cpp -o cvll_ols.o +g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c cvll_rlm_m.cpp -o cvll_rlm_m.o +... +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘modeLLtest’ +* removing ‘/tmp/workdir/modeLLtest/old/modeLLtest.Rcheck/modeLLtest’ + + +``` +# MRZero + +
* Version: 0.2.0 * GitHub: NA @@ -6059,14 +7374,14 @@ using C++17 g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/opt/R/4.3.1/lib/R/site-library/BH/include' -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppEigen/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -I'/opt/R/4.3.1/lib/R/site-library/rstan/include' -I'/opt/R/4.3.1/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o In file included from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/Core:205, ... -/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:56: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_survival_mspline_namespace::model_survival_mspline; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ +/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:56: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_survival_param_namespace::model_survival_param; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ /opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:10: required from here /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 654 | return internal::first_aligned::alignment),Derived>(m); | ^~~~~~~~~ g++: fatal error: Killed signal terminated program cc1plus compilation terminated. -make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stanExports_survival_mspline.o] Error 1 +make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stanExports_survival_param.o] Error 1 ERROR: compilation failed for package ‘multinma’ * removing ‘/tmp/workdir/multinma/new/multinma.Rcheck/multinma’ @@ -6086,14 +7401,14 @@ using C++17 g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/opt/R/4.3.1/lib/R/site-library/BH/include' -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppEigen/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -I'/opt/R/4.3.1/lib/R/site-library/rstan/include' -I'/opt/R/4.3.1/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o In file included from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/Core:205, ... -/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:56: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_survival_mspline_namespace::model_survival_mspline; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ +/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:56: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_survival_param_namespace::model_survival_param; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ /opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:10: required from here /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 654 | return internal::first_aligned::alignment),Derived>(m); | ^~~~~~~~~ g++: fatal error: Killed signal terminated program cc1plus compilation terminated. -make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stanExports_survival_mspline.o] Error 1 +make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stanExports_survival_param.o] Error 1 ERROR: compilation failed for package ‘multinma’ * removing ‘/tmp/workdir/multinma/old/multinma.Rcheck/multinma’ @@ -6305,7 +7620,7 @@ ERROR: lazy loading failed for package ‘nebula’ * GitHub: https://github.com/jongheepark/NetworkChange * Source code: https://github.com/cran/NetworkChange * Date/Publication: 2022-03-04 07:30:02 UTC -* Number of recursive dependencies: 132 +* Number of recursive dependencies: 133 Run `revdepcheck::cloud_details(, "NetworkChange")` for more info @@ -6543,150 +7858,240 @@ ERROR: lazy loading failed for package ‘noncomplyR’ ``` -# ontologics +# ohun
-* Version: 0.7.0 -* GitHub: https://github.com/luckinet/ontologics -* Source code: https://github.com/cran/ontologics -* Date/Publication: 2023-05-10 09:20:05 UTC -* Number of recursive dependencies: 80 +* Version: 1.0.2 +* GitHub: https://github.com/ropensci/ohun +* Source code: https://github.com/cran/ohun +* Date/Publication: 2024-08-19 18:40:02 UTC +* Number of recursive dependencies: 100 -Run `revdepcheck::cloud_details(, "ontologics")` for more info +Run `revdepcheck::cloud_details(, "ohun")` for more info
-## In both - -* checking whether package ‘ontologics’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/ontologics/new/ontologics.Rcheck/00install.out’ for details. - ``` - -## Installation +## Error before installation ### Devel ``` -* installing *source* package ‘ontologics’ ... -** package ‘ontologics’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error in dyn.load(file, DLLpath = DLLpath, ...) : - unable to load shared object '/opt/R/4.3.1/lib/R/site-library/redland/libs/redland.so': - librdf.so.0: cannot open shared object file: No such file or directory -Calls: ... asNamespace -> loadNamespace -> library.dynam -> dyn.load -Execution halted -ERROR: lazy loading failed for package ‘ontologics’ -* removing ‘/tmp/workdir/ontologics/new/ontologics.Rcheck/ontologics’ +* using log directory ‘/tmp/workdir/ohun/new/ohun.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘ohun/DESCRIPTION’ ... OK +... +* this is package ‘ohun’ version ‘1.0.2’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package required but not available: ‘warbleR’ + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + ``` ### CRAN ``` -* installing *source* package ‘ontologics’ ... -** package ‘ontologics’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error in dyn.load(file, DLLpath = DLLpath, ...) : - unable to load shared object '/opt/R/4.3.1/lib/R/site-library/redland/libs/redland.so': - librdf.so.0: cannot open shared object file: No such file or directory -Calls: ... asNamespace -> loadNamespace -> library.dynam -> dyn.load -Execution halted -ERROR: lazy loading failed for package ‘ontologics’ -* removing ‘/tmp/workdir/ontologics/old/ontologics.Rcheck/ontologics’ +* using log directory ‘/tmp/workdir/ohun/old/ohun.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘ohun/DESCRIPTION’ ... OK +... +* this is package ‘ohun’ version ‘1.0.2’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package required but not available: ‘warbleR’ + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + ``` -# OVtool +# oncoPredict
-* Version: 1.0.3 -* GitHub: NA -* Source code: https://github.com/cran/OVtool -* Date/Publication: 2021-11-02 08:10:07 UTC -* Number of recursive dependencies: 157 +* Version: 1.2 +* GitHub: https://github.com/HuangLabUMN/oncoPredict +* Source code: https://github.com/cran/oncoPredict +* Date/Publication: 2024-04-05 07:53:00 UTC +* Number of recursive dependencies: 208 -Run `revdepcheck::cloud_details(, "OVtool")` for more info +Run `revdepcheck::cloud_details(, "oncoPredict")` for more info
-## In both - -* checking whether package ‘OVtool’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/OVtool/new/OVtool.Rcheck/00install.out’ for details. - ``` - -## Installation +## Error before installation ### Devel ``` -* installing *source* package ‘OVtool’ ... -** package ‘OVtool’ successfully unpacked and MD5 sums checked -** using staged installation +* using log directory ‘/tmp/workdir/oncoPredict/new/oncoPredict.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘oncoPredict/DESCRIPTION’ ... OK +... +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Packages required but not available: + 'GenomicFeatures', 'TxDb.Hsapiens.UCSC.hg19.knownGene' + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +### CRAN + +``` +* using log directory ‘/tmp/workdir/oncoPredict/old/oncoPredict.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘oncoPredict/DESCRIPTION’ ... OK +... +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Packages required but not available: + 'GenomicFeatures', 'TxDb.Hsapiens.UCSC.hg19.knownGene' + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +# ontologics + +
+ +* Version: 0.7.0 +* GitHub: https://github.com/luckinet/ontologics +* Source code: https://github.com/cran/ontologics +* Date/Publication: 2023-05-10 09:20:05 UTC +* Number of recursive dependencies: 80 + +Run `revdepcheck::cloud_details(, "ontologics")` for more info + +
+ +## In both + +* checking whether package ‘ontologics’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/ontologics/new/ontologics.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘ontologics’ ... +** package ‘ontologics’ successfully unpacked and MD5 sums checked +** using staged installation ** R -** data -*** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘twang’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Error in dyn.load(file, DLLpath = DLLpath, ...) : + unable to load shared object '/opt/R/4.3.1/lib/R/site-library/redland/libs/redland.so': + librdf.so.0: cannot open shared object file: No such file or directory +Calls: ... asNamespace -> loadNamespace -> library.dynam -> dyn.load Execution halted -ERROR: lazy loading failed for package ‘OVtool’ -* removing ‘/tmp/workdir/OVtool/new/OVtool.Rcheck/OVtool’ +ERROR: lazy loading failed for package ‘ontologics’ +* removing ‘/tmp/workdir/ontologics/new/ontologics.Rcheck/ontologics’ ``` ### CRAN ``` -* installing *source* package ‘OVtool’ ... -** package ‘OVtool’ successfully unpacked and MD5 sums checked +* installing *source* package ‘ontologics’ ... +** package ‘ontologics’ successfully unpacked and MD5 sums checked ** using staged installation ** R -** data -*** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘twang’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Error in dyn.load(file, DLLpath = DLLpath, ...) : + unable to load shared object '/opt/R/4.3.1/lib/R/site-library/redland/libs/redland.so': + librdf.so.0: cannot open shared object file: No such file or directory +Calls: ... asNamespace -> loadNamespace -> library.dynam -> dyn.load Execution halted -ERROR: lazy loading failed for package ‘OVtool’ -* removing ‘/tmp/workdir/OVtool/old/OVtool.Rcheck/OVtool’ +ERROR: lazy loading failed for package ‘ontologics’ +* removing ‘/tmp/workdir/ontologics/old/ontologics.Rcheck/ontologics’ ``` -# paths +# OVtool
-* Version: 0.1.1 +* Version: 1.0.3 * GitHub: NA -* Source code: https://github.com/cran/paths -* Date/Publication: 2021-06-18 08:40:02 UTC -* Number of recursive dependencies: 102 +* Source code: https://github.com/cran/OVtool +* Date/Publication: 2021-11-02 08:10:07 UTC +* Number of recursive dependencies: 157 -Run `revdepcheck::cloud_details(, "paths")` for more info +Run `revdepcheck::cloud_details(, "OVtool")` for more info
## In both -* checking whether package ‘paths’ can be installed ... ERROR +* checking whether package ‘OVtool’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/paths/new/paths.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/OVtool/new/OVtool.Rcheck/00install.out’ for details. ``` ## Installation @@ -6694,54 +8099,52 @@ Run `revdepcheck::cloud_details(, "paths")` for more info ### Devel ``` -* installing *source* package ‘paths’ ... -** package ‘paths’ successfully unpacked and MD5 sums checked +* installing *source* package ‘OVtool’ ... +** package ‘OVtool’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Error: package or namespace load failed for ‘twang’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Execution halted -ERROR: lazy loading failed for package ‘paths’ -* removing ‘/tmp/workdir/paths/new/paths.Rcheck/paths’ +ERROR: lazy loading failed for package ‘OVtool’ +* removing ‘/tmp/workdir/OVtool/new/OVtool.Rcheck/OVtool’ ``` ### CRAN ``` -* installing *source* package ‘paths’ ... -** package ‘paths’ successfully unpacked and MD5 sums checked +* installing *source* package ‘OVtool’ ... +** package ‘OVtool’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Error: package or namespace load failed for ‘twang’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Execution halted -ERROR: lazy loading failed for package ‘paths’ -* removing ‘/tmp/workdir/paths/old/paths.Rcheck/paths’ +ERROR: lazy loading failed for package ‘OVtool’ +* removing ‘/tmp/workdir/OVtool/old/OVtool.Rcheck/OVtool’ ``` -# pencal +# pagoda2
-* Version: 2.2.2 -* GitHub: NA -* Source code: https://github.com/cran/pencal -* Date/Publication: 2024-06-12 11:10:02 UTC -* Number of recursive dependencies: 172 +* Version: 1.0.12 +* GitHub: https://github.com/kharchenkolab/pagoda2 +* Source code: https://github.com/cran/pagoda2 +* Date/Publication: 2024-02-27 00:50:02 UTC +* Number of recursive dependencies: 162 -Run `revdepcheck::cloud_details(, "pencal")` for more info +Run `revdepcheck::cloud_details(, "pagoda2")` for more info
@@ -6750,7 +8153,7 @@ Run `revdepcheck::cloud_details(, "pencal")` for more info ### Devel ``` -* using log directory ‘/tmp/workdir/pencal/new/pencal.Rcheck’ +* using log directory ‘/tmp/workdir/pagoda2/new/pagoda2.Rcheck’ * using R version 4.3.1 (2023-06-16) * using platform: x86_64-pc-linux-gnu (64-bit) * R was compiled by @@ -6759,18 +8162,18 @@ Run `revdepcheck::cloud_details(, "pencal")` for more info * running under: Ubuntu 22.04.4 LTS * using session charset: UTF-8 * using option ‘--no-manual’ -* checking for file ‘pencal/DESCRIPTION’ ... OK +* checking for file ‘pagoda2/DESCRIPTION’ ... OK ... ---- failed re-building ‘vignette.Rnw’ - -SUMMARY: processing the following file failed: - ‘vignette.Rnw’ +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package required but not available: ‘rjson’ -Error: Vignette re-building failed. -Execution halted +Package suggested but not available for checking: ‘scde’ +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. * DONE -Status: 1 WARNING, 1 NOTE +Status: 1 ERROR @@ -6780,7 +8183,7 @@ Status: 1 WARNING, 1 NOTE ### CRAN ``` -* using log directory ‘/tmp/workdir/pencal/old/pencal.Rcheck’ +* using log directory ‘/tmp/workdir/pagoda2/old/pagoda2.Rcheck’ * using R version 4.3.1 (2023-06-16) * using platform: x86_64-pc-linux-gnu (64-bit) * R was compiled by @@ -6789,44 +8192,44 @@ Status: 1 WARNING, 1 NOTE * running under: Ubuntu 22.04.4 LTS * using session charset: UTF-8 * using option ‘--no-manual’ -* checking for file ‘pencal/DESCRIPTION’ ... OK +* checking for file ‘pagoda2/DESCRIPTION’ ... OK ... ---- failed re-building ‘vignette.Rnw’ - -SUMMARY: processing the following file failed: - ‘vignette.Rnw’ +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package required but not available: ‘rjson’ -Error: Vignette re-building failed. -Execution halted +Package suggested but not available for checking: ‘scde’ +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. * DONE -Status: 1 WARNING, 1 NOTE +Status: 1 ERROR ``` -# pez +# PAMpal
-* Version: 1.2-4 +* Version: 1.2.1 * GitHub: NA -* Source code: https://github.com/cran/pez -* Date/Publication: 2022-08-31 18:00:02 UTC -* Number of recursive dependencies: 71 +* Source code: https://github.com/cran/PAMpal +* Date/Publication: 2024-07-11 22:50:02 UTC +* Number of recursive dependencies: 118 -Run `revdepcheck::cloud_details(, "pez")` for more info +Run `revdepcheck::cloud_details(, "PAMpal")` for more info
## In both -* checking whether package ‘pez’ can be installed ... ERROR +* checking whether package ‘PAMpal’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/pez/new/pez.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/PAMpal/new/PAMpal.Rcheck/00install.out’ for details. ``` ## Installation @@ -6834,125 +8237,92 @@ Run `revdepcheck::cloud_details(, "pez")` for more info ### Devel ``` -* installing *source* package ‘pez’ ... -** package ‘pez’ successfully unpacked and MD5 sums checked +* installing *source* package ‘PAMpal’ ... +** package ‘PAMpal’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data +*** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace + there is no package called ‘rjson’ +Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart Execution halted -ERROR: lazy loading failed for package ‘pez’ -* removing ‘/tmp/workdir/pez/new/pez.Rcheck/pez’ +ERROR: lazy loading failed for package ‘PAMpal’ +* removing ‘/tmp/workdir/PAMpal/new/PAMpal.Rcheck/PAMpal’ ``` ### CRAN ``` -* installing *source* package ‘pez’ ... -** package ‘pez’ successfully unpacked and MD5 sums checked +* installing *source* package ‘PAMpal’ ... +** package ‘PAMpal’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data +*** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace + there is no package called ‘rjson’ +Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart Execution halted -ERROR: lazy loading failed for package ‘pez’ -* removing ‘/tmp/workdir/pez/old/pez.Rcheck/pez’ +ERROR: lazy loading failed for package ‘PAMpal’ +* removing ‘/tmp/workdir/PAMpal/old/PAMpal.Rcheck/PAMpal’ ``` -# piecewiseSEM +# paths
-* Version: NA +* Version: 0.1.1 * GitHub: NA -* Source code: https://github.com/cran/piecewiseSEM -* Number of recursive dependencies: 108 +* Source code: https://github.com/cran/paths +* Date/Publication: 2021-06-18 08:40:02 UTC +* Number of recursive dependencies: 102 -Run `revdepcheck::cloud_details(, "piecewiseSEM")` for more info +Run `revdepcheck::cloud_details(, "paths")` for more info
-## Error before installation - -### Devel - -``` +## In both +* checking whether package ‘paths’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/paths/new/paths.Rcheck/00install.out’ for details. + ``` +## Installation +### Devel +``` +* installing *source* package ‘paths’ ... +** package ‘paths’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘paths’ +* removing ‘/tmp/workdir/paths/new/paths.Rcheck/paths’ ``` ### CRAN ``` - - - - - - -``` -# pould - -
- -* Version: 1.0.1 -* GitHub: NA -* Source code: https://github.com/cran/pould -* Date/Publication: 2020-10-16 13:50:03 UTC -* Number of recursive dependencies: 104 - -Run `revdepcheck::cloud_details(, "pould")` for more info - -
- -## In both - -* checking whether package ‘pould’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/pould/new/pould.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘pould’ ... -** package ‘pould’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘pould’ -* removing ‘/tmp/workdir/pould/new/pould.Rcheck/pould’ - - -``` -### CRAN - -``` -* installing *source* package ‘pould’ ... -** package ‘pould’ successfully unpacked and MD5 sums checked +* installing *source* package ‘paths’ ... +** package ‘paths’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data @@ -6963,86 +8333,57 @@ Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[ namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘pould’ -* removing ‘/tmp/workdir/pould/old/pould.Rcheck/pould’ +ERROR: lazy loading failed for package ‘paths’ +* removing ‘/tmp/workdir/paths/old/paths.Rcheck/paths’ ``` -# pre +# PathwaySpace
-* Version: 1.0.7 -* GitHub: https://github.com/marjoleinF/pre -* Source code: https://github.com/cran/pre -* Date/Publication: 2024-01-12 19:30:02 UTC -* Number of recursive dependencies: 151 +* Version: NA +* GitHub: NA +* Source code: https://github.com/cran/PathwaySpace +* Number of recursive dependencies: 70 -Run `revdepcheck::cloud_details(, "pre")` for more info +Run `revdepcheck::cloud_details(, "PathwaySpace")` for more info
-## In both - -* checking whether package ‘pre’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/pre/new/pre.Rcheck/00install.out’ for details. - ``` - -## Installation +## Error before installation ### Devel ``` -* installing *source* package ‘pre’ ... -** package ‘pre’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘pre’ -* removing ‘/tmp/workdir/pre/new/pre.Rcheck/pre’ + + + + ``` ### CRAN ``` -* installing *source* package ‘pre’ ... -** package ‘pre’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘pre’ -* removing ‘/tmp/workdir/pre/old/pre.Rcheck/pre’ + + + + ``` -# ProFAST +# pencal
-* Version: 1.4 -* GitHub: https://github.com/feiyoung/ProFAST -* Source code: https://github.com/cran/ProFAST -* Date/Publication: 2024-03-18 08:10:06 UTC -* Number of recursive dependencies: 245 +* Version: 2.2.2 +* GitHub: NA +* Source code: https://github.com/cran/pencal +* Date/Publication: 2024-06-12 11:10:02 UTC +* Number of recursive dependencies: 172 -Run `revdepcheck::cloud_details(, "ProFAST")` for more info +Run `revdepcheck::cloud_details(, "pencal")` for more info
@@ -7051,7 +8392,7 @@ Run `revdepcheck::cloud_details(, "ProFAST")` for more info ### Devel ``` -* using log directory ‘/tmp/workdir/ProFAST/new/ProFAST.Rcheck’ +* using log directory ‘/tmp/workdir/pencal/new/pencal.Rcheck’ * using R version 4.3.1 (2023-06-16) * using platform: x86_64-pc-linux-gnu (64-bit) * R was compiled by @@ -7060,18 +8401,18 @@ Run `revdepcheck::cloud_details(, "ProFAST")` for more info * running under: Ubuntu 22.04.4 LTS * using session charset: UTF-8 * using option ‘--no-manual’ -* checking for file ‘ProFAST/DESCRIPTION’ ... OK +* checking for file ‘pencal/DESCRIPTION’ ... OK ... -* this is package ‘ProFAST’ version ‘1.4’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Packages required but not available: 'DR.SC', 'PRECAST' +--- failed re-building ‘vignette.Rnw’ + +SUMMARY: processing the following file failed: + ‘vignette.Rnw’ + +Error: Vignette re-building failed. +Execution halted -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. * DONE -Status: 1 ERROR +Status: 1 WARNING, 1 NOTE @@ -7081,7 +8422,7 @@ Status: 1 ERROR ### CRAN ``` -* using log directory ‘/tmp/workdir/ProFAST/old/ProFAST.Rcheck’ +* using log directory ‘/tmp/workdir/pencal/old/pencal.Rcheck’ * using R version 4.3.1 (2023-06-16) * using platform: x86_64-pc-linux-gnu (64-bit) * R was compiled by @@ -7090,44 +8431,44 @@ Status: 1 ERROR * running under: Ubuntu 22.04.4 LTS * using session charset: UTF-8 * using option ‘--no-manual’ -* checking for file ‘ProFAST/DESCRIPTION’ ... OK +* checking for file ‘pencal/DESCRIPTION’ ... OK ... -* this is package ‘ProFAST’ version ‘1.4’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Packages required but not available: 'DR.SC', 'PRECAST' +--- failed re-building ‘vignette.Rnw’ + +SUMMARY: processing the following file failed: + ‘vignette.Rnw’ + +Error: Vignette re-building failed. +Execution halted -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. * DONE -Status: 1 ERROR +Status: 1 WARNING, 1 NOTE ``` -# PRSPGx +# pez
-* Version: 0.3.0 +* Version: 1.2-4 * GitHub: NA -* Source code: https://github.com/cran/PRSPGx -* Date/Publication: 2022-07-20 15:00:02 UTC -* Number of recursive dependencies: 109 +* Source code: https://github.com/cran/pez +* Date/Publication: 2022-08-31 18:00:02 UTC +* Number of recursive dependencies: 71 -Run `revdepcheck::cloud_details(, "PRSPGx")` for more info +Run `revdepcheck::cloud_details(, "pez")` for more info
## In both -* checking whether package ‘PRSPGx’ can be installed ... ERROR +* checking whether package ‘pez’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/PRSPGx/new/PRSPGx.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/pez/new/pez.Rcheck/00install.out’ for details. ``` ## Installation @@ -7135,213 +8476,172 @@ Run `revdepcheck::cloud_details(, "PRSPGx")` for more info ### Devel ``` -* installing *source* package ‘PRSPGx’ ... -** package ‘PRSPGx’ successfully unpacked and MD5 sums checked +* installing *source* package ‘pez’ ... +** package ‘pez’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data -*** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘PRSPGx’ -* removing ‘/tmp/workdir/PRSPGx/new/PRSPGx.Rcheck/PRSPGx’ +ERROR: lazy loading failed for package ‘pez’ +* removing ‘/tmp/workdir/pez/new/pez.Rcheck/pez’ ``` ### CRAN ``` -* installing *source* package ‘PRSPGx’ ... -** package ‘PRSPGx’ successfully unpacked and MD5 sums checked +* installing *source* package ‘pez’ ... +** package ‘pez’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data -*** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘PRSPGx’ -* removing ‘/tmp/workdir/PRSPGx/old/PRSPGx.Rcheck/PRSPGx’ +ERROR: lazy loading failed for package ‘pez’ +* removing ‘/tmp/workdir/pez/old/pez.Rcheck/pez’ ``` -# psbcSpeedUp +# piecewiseSEM
-* Version: 2.0.7 -* GitHub: https://github.com/ocbe-uio/psbcSpeedUp -* Source code: https://github.com/cran/psbcSpeedUp -* Date/Publication: 2024-07-01 09:00:02 UTC -* Number of recursive dependencies: 129 +* Version: NA +* GitHub: NA +* Source code: https://github.com/cran/piecewiseSEM +* Number of recursive dependencies: 108 -Run `revdepcheck::cloud_details(, "psbcSpeedUp")` for more info +Run `revdepcheck::cloud_details(, "piecewiseSEM")` for more info
-## In both - -* checking whether package ‘psbcSpeedUp’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/psbcSpeedUp/new/psbcSpeedUp.Rcheck/00install.out’ for details. - ``` - -## Installation +## Error before installation ### Devel ``` -* installing *source* package ‘psbcSpeedUp’ ... -** package ‘psbcSpeedUp’ successfully unpacked and MD5 sums checked -** using staged installation -checking whether the C++ compiler works... yes -checking for C++ compiler default output file name... a.out -checking for suffix of executables... -checking whether we are cross compiling... no -checking for suffix of object files... o -checking whether the compiler supports GNU C++... yes -checking whether g++ -std=gnu++17 accepts -g... yes -... -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘psbcSpeedUp’ -* removing ‘/tmp/workdir/psbcSpeedUp/new/psbcSpeedUp.Rcheck/psbcSpeedUp’ + + + + ``` ### CRAN ``` -* installing *source* package ‘psbcSpeedUp’ ... -** package ‘psbcSpeedUp’ successfully unpacked and MD5 sums checked -** using staged installation -checking whether the C++ compiler works... yes -checking for C++ compiler default output file name... a.out -checking for suffix of executables... -checking whether we are cross compiling... no -checking for suffix of object files... o -checking whether the compiler supports GNU C++... yes -checking whether g++ -std=gnu++17 accepts -g... yes -... -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘psbcSpeedUp’ -* removing ‘/tmp/workdir/psbcSpeedUp/old/psbcSpeedUp.Rcheck/psbcSpeedUp’ + + + + ``` -# pscore +# polyRAD
-* Version: 0.4.0 -* GitHub: https://github.com/JWiley/score-project -* Source code: https://github.com/cran/pscore -* Date/Publication: 2022-05-13 22:30:02 UTC -* Number of recursive dependencies: 169 +* Version: 2.0.0 +* GitHub: https://github.com/lvclark/polyRAD +* Source code: https://github.com/cran/polyRAD +* Date/Publication: 2022-11-06 21:50:02 UTC +* Number of recursive dependencies: 135 -Run `revdepcheck::cloud_details(, "pscore")` for more info +Run `revdepcheck::cloud_details(, "polyRAD")` for more info
-## In both - -* checking whether package ‘pscore’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/pscore/new/pscore.Rcheck/00install.out’ for details. - ``` - -## Installation +## Error before installation ### Devel ``` -* installing *source* package ‘pscore’ ... -** package ‘pscore’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -** inst -** byte-compile and prepare package for lazy loading -Warning in check_dep_version() : - ABI version mismatch: -lme4 was built with Matrix ABI version 1 -Current Matrix ABI version is 0 -Please re-install lme4 from source or restore original ‘Matrix’ package -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +* using log directory ‘/tmp/workdir/polyRAD/new/polyRAD.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘polyRAD/DESCRIPTION’ ... OK +... + + When sourcing ‘polyRADtutorial.R’: +Error: Probabilities must be finite and non-negative! Execution halted -ERROR: lazy loading failed for package ‘pscore’ -* removing ‘/tmp/workdir/pscore/new/pscore.Rcheck/pscore’ + + ‘isolocus_sorting.Rmd’ using ‘UTF-8’... OK + ‘polyRADtutorial.Rmd’ using ‘UTF-8’... failed +* checking re-building of vignette outputs ... OK +* DONE +Status: 1 ERROR, 3 NOTEs + + + ``` ### CRAN ``` -* installing *source* package ‘pscore’ ... -** package ‘pscore’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -** inst -** byte-compile and prepare package for lazy loading -Warning in check_dep_version() : - ABI version mismatch: -lme4 was built with Matrix ABI version 1 -Current Matrix ABI version is 0 -Please re-install lme4 from source or restore original ‘Matrix’ package -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +* using log directory ‘/tmp/workdir/polyRAD/old/polyRAD.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘polyRAD/DESCRIPTION’ ... OK +... + + When sourcing ‘polyRADtutorial.R’: +Error: Probabilities must be finite and non-negative! Execution halted -ERROR: lazy loading failed for package ‘pscore’ -* removing ‘/tmp/workdir/pscore/old/pscore.Rcheck/pscore’ + + ‘isolocus_sorting.Rmd’ using ‘UTF-8’... OK + ‘polyRADtutorial.Rmd’ using ‘UTF-8’... failed +* checking re-building of vignette outputs ... OK +* DONE +Status: 1 ERROR, 3 NOTEs + + + ``` -# psfmi +# pould
-* Version: 1.4.0 -* GitHub: https://github.com/mwheymans/psfmi -* Source code: https://github.com/cran/psfmi -* Date/Publication: 2023-06-17 22:40:02 UTC -* Number of recursive dependencies: 164 +* Version: 1.0.1 +* GitHub: NA +* Source code: https://github.com/cran/pould +* Date/Publication: 2020-10-16 13:50:03 UTC +* Number of recursive dependencies: 104 -Run `revdepcheck::cloud_details(, "psfmi")` for more info +Run `revdepcheck::cloud_details(, "pould")` for more info
## In both -* checking whether package ‘psfmi’ can be installed ... ERROR +* checking whether package ‘pould’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/psfmi/new/psfmi.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/pould/new/pould.Rcheck/00install.out’ for details. ``` ## Installation @@ -7349,63 +8649,63 @@ Run `revdepcheck::cloud_details(, "psfmi")` for more info ### Devel ``` -* installing *source* package ‘psfmi’ ... -** package ‘psfmi’ successfully unpacked and MD5 sums checked +* installing *source* package ‘pould’ ... +** package ‘pould’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) : + there is no package called ‘rms’ +Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart Execution halted -ERROR: lazy loading failed for package ‘psfmi’ -* removing ‘/tmp/workdir/psfmi/new/psfmi.Rcheck/psfmi’ +ERROR: lazy loading failed for package ‘pould’ +* removing ‘/tmp/workdir/pould/new/pould.Rcheck/pould’ ``` ### CRAN ``` -* installing *source* package ‘psfmi’ ... -** package ‘psfmi’ successfully unpacked and MD5 sums checked +* installing *source* package ‘pould’ ... +** package ‘pould’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) : + there is no package called ‘rms’ +Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart Execution halted -ERROR: lazy loading failed for package ‘psfmi’ -* removing ‘/tmp/workdir/psfmi/old/psfmi.Rcheck/psfmi’ +ERROR: lazy loading failed for package ‘pould’ +* removing ‘/tmp/workdir/pould/old/pould.Rcheck/pould’ ``` -# pssmooth +# pre
-* Version: 1.0.3 -* GitHub: https://github.com/mjuraska/pssmooth -* Source code: https://github.com/cran/pssmooth -* Date/Publication: 2020-11-18 13:20:03 UTC -* Number of recursive dependencies: 47 +* Version: 1.0.7 +* GitHub: https://github.com/marjoleinF/pre +* Source code: https://github.com/cran/pre +* Date/Publication: 2024-01-12 19:30:02 UTC +* Number of recursive dependencies: 151 -Run `revdepcheck::cloud_details(, "pssmooth")` for more info +Run `revdepcheck::cloud_details(, "pre")` for more info
## In both -* checking whether package ‘pssmooth’ can be installed ... ERROR +* checking whether package ‘pre’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/pssmooth/new/pssmooth.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/pre/new/pre.Rcheck/00install.out’ for details. ``` ## Installation @@ -7413,60 +8713,54 @@ Run `revdepcheck::cloud_details(, "pssmooth")` for more info ### Devel ``` -* installing *source* package ‘pssmooth’ ... -** package ‘pssmooth’ successfully unpacked and MD5 sums checked +* installing *source* package ‘pre’ ... +** package ‘pre’ successfully unpacked and MD5 sums checked ** using staged installation ** R +** data +*** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading -Warning in check_dep_version() : - ABI version mismatch: -lme4 was built with Matrix ABI version 1 -Current Matrix ABI version is 0 -Please re-install lme4 from source or restore original ‘Matrix’ package Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘pssmooth’ -* removing ‘/tmp/workdir/pssmooth/new/pssmooth.Rcheck/pssmooth’ +ERROR: lazy loading failed for package ‘pre’ +* removing ‘/tmp/workdir/pre/new/pre.Rcheck/pre’ ``` ### CRAN ``` -* installing *source* package ‘pssmooth’ ... -** package ‘pssmooth’ successfully unpacked and MD5 sums checked +* installing *source* package ‘pre’ ... +** package ‘pre’ successfully unpacked and MD5 sums checked ** using staged installation ** R +** data +*** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading -Warning in check_dep_version() : - ABI version mismatch: -lme4 was built with Matrix ABI version 1 -Current Matrix ABI version is 0 -Please re-install lme4 from source or restore original ‘Matrix’ package Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘pssmooth’ -* removing ‘/tmp/workdir/pssmooth/old/pssmooth.Rcheck/pssmooth’ +ERROR: lazy loading failed for package ‘pre’ +* removing ‘/tmp/workdir/pre/old/pre.Rcheck/pre’ ``` -# ptmixed +# ProFAST
-* Version: 1.1.3 -* GitHub: NA -* Source code: https://github.com/cran/ptmixed -* Date/Publication: 2022-08-18 12:00:02 UTC -* Number of recursive dependencies: 55 +* Version: 1.4 +* GitHub: https://github.com/feiyoung/ProFAST +* Source code: https://github.com/cran/ProFAST +* Date/Publication: 2024-03-18 08:10:06 UTC +* Number of recursive dependencies: 245 -Run `revdepcheck::cloud_details(, "ptmixed")` for more info +Run `revdepcheck::cloud_details(, "ProFAST")` for more info
@@ -7475,7 +8769,7 @@ Run `revdepcheck::cloud_details(, "ptmixed")` for more info ### Devel ``` -* using log directory ‘/tmp/workdir/ptmixed/new/ptmixed.Rcheck’ +* using log directory ‘/tmp/workdir/ProFAST/new/ProFAST.Rcheck’ * using R version 4.3.1 (2023-06-16) * using platform: x86_64-pc-linux-gnu (64-bit) * R was compiled by @@ -7484,13 +8778,13 @@ Run `revdepcheck::cloud_details(, "ptmixed")` for more info * running under: Ubuntu 22.04.4 LTS * using session charset: UTF-8 * using option ‘--no-manual’ -* checking for file ‘ptmixed/DESCRIPTION’ ... OK +* checking for file ‘ProFAST/DESCRIPTION’ ... OK ... -* this is package ‘ptmixed’ version ‘1.1.3’ +* this is package ‘ProFAST’ version ‘1.4’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... ERROR -Package required but not available: ‘tweeDEseq’ +Packages required but not available: 'DR.SC', 'PRECAST' See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual. @@ -7505,7 +8799,7 @@ Status: 1 ERROR ### CRAN ``` -* using log directory ‘/tmp/workdir/ptmixed/old/ptmixed.Rcheck’ +* using log directory ‘/tmp/workdir/ProFAST/old/ProFAST.Rcheck’ * using R version 4.3.1 (2023-06-16) * using platform: x86_64-pc-linux-gnu (64-bit) * R was compiled by @@ -7514,13 +8808,13 @@ Status: 1 ERROR * running under: Ubuntu 22.04.4 LTS * using session charset: UTF-8 * using option ‘--no-manual’ -* checking for file ‘ptmixed/DESCRIPTION’ ... OK +* checking for file ‘ProFAST/DESCRIPTION’ ... OK ... -* this is package ‘ptmixed’ version ‘1.1.3’ +* this is package ‘ProFAST’ version ‘1.4’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... ERROR -Package required but not available: ‘tweeDEseq’ +Packages required but not available: 'DR.SC', 'PRECAST' See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual. @@ -7532,26 +8826,26 @@ Status: 1 ERROR ``` -# QHScrnomo +# PRSPGx
-* Version: 3.0.1 -* GitHub: https://github.com/ClevelandClinicQHS/QHScrnomo -* Source code: https://github.com/cran/QHScrnomo -* Date/Publication: 2024-03-18 21:20:02 UTC -* Number of recursive dependencies: 92 +* Version: 0.3.0 +* GitHub: NA +* Source code: https://github.com/cran/PRSPGx +* Date/Publication: 2022-07-20 15:00:02 UTC +* Number of recursive dependencies: 109 -Run `revdepcheck::cloud_details(, "QHScrnomo")` for more info +Run `revdepcheck::cloud_details(, "PRSPGx")` for more info
## In both -* checking whether package ‘QHScrnomo’ can be installed ... ERROR +* checking whether package ‘PRSPGx’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/QHScrnomo/new/QHScrnomo.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/PRSPGx/new/PRSPGx.Rcheck/00install.out’ for details. ``` ## Installation @@ -7559,71 +8853,63 @@ Run `revdepcheck::cloud_details(, "QHScrnomo")` for more info ### Devel ``` -* installing *source* package ‘QHScrnomo’ ... -** package ‘QHScrnomo’ successfully unpacked and MD5 sums checked +* installing *source* package ‘PRSPGx’ ... +** package ‘PRSPGx’ successfully unpacked and MD5 sums checked ** using staged installation -** libs -using C compiler: ‘gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ -gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c Cindex.c -o Cindex.o -gcc -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o QHScrnomo.so Cindex.o -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/QHScrnomo/new/QHScrnomo.Rcheck/00LOCK-QHScrnomo/00new/QHScrnomo/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘rms’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘QHScrnomo’ -* removing ‘/tmp/workdir/QHScrnomo/new/QHScrnomo.Rcheck/QHScrnomo’ +ERROR: lazy loading failed for package ‘PRSPGx’ +* removing ‘/tmp/workdir/PRSPGx/new/PRSPGx.Rcheck/PRSPGx’ ``` ### CRAN ``` -* installing *source* package ‘QHScrnomo’ ... -** package ‘QHScrnomo’ successfully unpacked and MD5 sums checked +* installing *source* package ‘PRSPGx’ ... +** package ‘PRSPGx’ successfully unpacked and MD5 sums checked ** using staged installation -** libs -using C compiler: ‘gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ -gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c Cindex.c -o Cindex.o -gcc -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o QHScrnomo.so Cindex.o -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/QHScrnomo/old/QHScrnomo.Rcheck/00LOCK-QHScrnomo/00new/QHScrnomo/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘rms’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘QHScrnomo’ -* removing ‘/tmp/workdir/QHScrnomo/old/QHScrnomo.Rcheck/QHScrnomo’ +ERROR: lazy loading failed for package ‘PRSPGx’ +* removing ‘/tmp/workdir/PRSPGx/old/PRSPGx.Rcheck/PRSPGx’ ``` -# qreport +# psbcSpeedUp
-* Version: 1.0-1 -* GitHub: NA -* Source code: https://github.com/cran/qreport -* Date/Publication: 2024-05-26 21:50:03 UTC -* Number of recursive dependencies: 77 +* Version: 2.0.7 +* GitHub: https://github.com/ocbe-uio/psbcSpeedUp +* Source code: https://github.com/cran/psbcSpeedUp +* Date/Publication: 2024-07-01 09:00:02 UTC +* Number of recursive dependencies: 130 -Run `revdepcheck::cloud_details(, "qreport")` for more info +Run `revdepcheck::cloud_details(, "psbcSpeedUp")` for more info
## In both -* checking whether package ‘qreport’ can be installed ... ERROR +* checking whether package ‘psbcSpeedUp’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/qreport/new/qreport.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/psbcSpeedUp/new/psbcSpeedUp.Rcheck/00install.out’ for details. ``` ## Installation @@ -7631,34 +8917,272 @@ Run `revdepcheck::cloud_details(, "qreport")` for more info ### Devel ``` -* installing *source* package ‘qreport’ ... -** package ‘qreport’ successfully unpacked and MD5 sums checked +* installing *source* package ‘psbcSpeedUp’ ... +** package ‘psbcSpeedUp’ successfully unpacked and MD5 sums checked ** using staged installation -** R +checking whether the C++ compiler works... yes +checking for C++ compiler default output file name... a.out +checking for suffix of executables... +checking whether we are cross compiling... no +checking for suffix of object files... o +checking whether the compiler supports GNU C++... yes +checking whether g++ -std=gnu++17 accepts -g... yes +... +** data +*** moving datasets to lazyload DB +** inst ** byte-compile and prepare package for lazy loading Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required + there is no package called ‘rms’ +Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart +Execution halted +ERROR: lazy loading failed for package ‘psbcSpeedUp’ +* removing ‘/tmp/workdir/psbcSpeedUp/new/psbcSpeedUp.Rcheck/psbcSpeedUp’ + + +``` +### CRAN + +``` +* installing *source* package ‘psbcSpeedUp’ ... +** package ‘psbcSpeedUp’ successfully unpacked and MD5 sums checked +** using staged installation +checking whether the C++ compiler works... yes +checking for C++ compiler default output file name... a.out +checking for suffix of executables... +checking whether we are cross compiling... no +checking for suffix of object files... o +checking whether the compiler supports GNU C++... yes +checking whether g++ -std=gnu++17 accepts -g... yes +... +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + there is no package called ‘rms’ +Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart +Execution halted +ERROR: lazy loading failed for package ‘psbcSpeedUp’ +* removing ‘/tmp/workdir/psbcSpeedUp/old/psbcSpeedUp.Rcheck/psbcSpeedUp’ + + +``` +# pscore + +
+ +* Version: 0.4.0 +* GitHub: https://github.com/JWiley/score-project +* Source code: https://github.com/cran/pscore +* Date/Publication: 2022-05-13 22:30:02 UTC +* Number of recursive dependencies: 169 + +Run `revdepcheck::cloud_details(, "pscore")` for more info + +
+ +## In both + +* checking whether package ‘pscore’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/pscore/new/pscore.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘pscore’ ... +** package ‘pscore’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +** inst +** byte-compile and prepare package for lazy loading +Warning in check_dep_version() : + ABI version mismatch: +lme4 was built with Matrix ABI version 1 +Current Matrix ABI version is 0 +Please re-install lme4 from source or restore original ‘Matrix’ package +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘pscore’ +* removing ‘/tmp/workdir/pscore/new/pscore.Rcheck/pscore’ + + +``` +### CRAN + +``` +* installing *source* package ‘pscore’ ... +** package ‘pscore’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +** inst +** byte-compile and prepare package for lazy loading +Warning in check_dep_version() : + ABI version mismatch: +lme4 was built with Matrix ABI version 1 +Current Matrix ABI version is 0 +Please re-install lme4 from source or restore original ‘Matrix’ package +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘pscore’ +* removing ‘/tmp/workdir/pscore/old/pscore.Rcheck/pscore’ + + +``` +# pssmooth + +
+ +* Version: 1.0.3 +* GitHub: https://github.com/mjuraska/pssmooth +* Source code: https://github.com/cran/pssmooth +* Date/Publication: 2020-11-18 13:20:03 UTC +* Number of recursive dependencies: 47 + +Run `revdepcheck::cloud_details(, "pssmooth")` for more info + +
+ +## In both + +* checking whether package ‘pssmooth’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/pssmooth/new/pssmooth.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘pssmooth’ ... +** package ‘pssmooth’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +Warning in check_dep_version() : + ABI version mismatch: +lme4 was built with Matrix ABI version 1 +Current Matrix ABI version is 0 +Please re-install lme4 from source or restore original ‘Matrix’ package +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘qreport’ -* removing ‘/tmp/workdir/qreport/new/qreport.Rcheck/qreport’ +ERROR: lazy loading failed for package ‘pssmooth’ +* removing ‘/tmp/workdir/pssmooth/new/pssmooth.Rcheck/pssmooth’ ``` ### CRAN ``` -* installing *source* package ‘qreport’ ... -** package ‘qreport’ successfully unpacked and MD5 sums checked +* installing *source* package ‘pssmooth’ ... +** package ‘pssmooth’ successfully unpacked and MD5 sums checked ** using staged installation ** R +** inst ** byte-compile and prepare package for lazy loading +Warning in check_dep_version() : + ABI version mismatch: +lme4 was built with Matrix ABI version 1 +Current Matrix ABI version is 0 +Please re-install lme4 from source or restore original ‘Matrix’ package Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘qreport’ -* removing ‘/tmp/workdir/qreport/old/qreport.Rcheck/qreport’ +ERROR: lazy loading failed for package ‘pssmooth’ +* removing ‘/tmp/workdir/pssmooth/old/pssmooth.Rcheck/pssmooth’ + + +``` +# ptmixed + +
+ +* Version: 1.1.3 +* GitHub: NA +* Source code: https://github.com/cran/ptmixed +* Date/Publication: 2022-08-18 12:00:02 UTC +* Number of recursive dependencies: 55 + +Run `revdepcheck::cloud_details(, "ptmixed")` for more info + +
+ +## Error before installation + +### Devel + +``` +* using log directory ‘/tmp/workdir/ptmixed/new/ptmixed.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘ptmixed/DESCRIPTION’ ... OK +... +* this is package ‘ptmixed’ version ‘1.1.3’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package required but not available: ‘tweeDEseq’ + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +### CRAN + +``` +* using log directory ‘/tmp/workdir/ptmixed/old/ptmixed.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘ptmixed/DESCRIPTION’ ... OK +... +* this is package ‘ptmixed’ version ‘1.1.3’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package required but not available: ‘tweeDEseq’ + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + ``` @@ -7807,7 +9331,7 @@ ERROR: lazy loading failed for package ‘Qtools’ * Version: NA * GitHub: NA * Source code: https://github.com/cran/QuantileGH -* Number of recursive dependencies: 99 +* Number of recursive dependencies: 98 Run `revdepcheck::cloud_details(, "QuantileGH")` for more info @@ -7835,26 +9359,26 @@ Run `revdepcheck::cloud_details(, "QuantileGH")` for more info ``` -# quantregGrowth +# quantilogram
-* Version: 1.7-1 +* Version: 3.1.1 * GitHub: NA -* Source code: https://github.com/cran/quantregGrowth -* Date/Publication: 2024-05-20 09:10:02 UTC -* Number of recursive dependencies: 37 +* Source code: https://github.com/cran/quantilogram +* Date/Publication: 2024-08-27 12:40:02 UTC +* Number of recursive dependencies: 58 -Run `revdepcheck::cloud_details(, "quantregGrowth")` for more info +Run `revdepcheck::cloud_details(, "quantilogram")` for more info
## In both -* checking whether package ‘quantregGrowth’ can be installed ... ERROR +* checking whether package ‘quantilogram’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/quantregGrowth/new/quantregGrowth.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/quantilogram/new/quantilogram.Rcheck/00install.out’ for details. ``` ## Installation @@ -7862,26 +9386,88 @@ Run `revdepcheck::cloud_details(, "quantregGrowth")` for more info ### Devel ``` -* installing *source* package ‘quantregGrowth’ ... -** package ‘quantregGrowth’ successfully unpacked and MD5 sums checked +* installing *source* package ‘quantilogram’ ... +** package ‘quantilogram’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data -** inst +*** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘quantreg’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘quantregGrowth’ -* removing ‘/tmp/workdir/quantregGrowth/new/quantregGrowth.Rcheck/quantregGrowth’ +ERROR: lazy loading failed for package ‘quantilogram’ +* removing ‘/tmp/workdir/quantilogram/new/quantilogram.Rcheck/quantilogram’ ``` ### CRAN ``` -* installing *source* package ‘quantregGrowth’ ... -** package ‘quantregGrowth’ successfully unpacked and MD5 sums checked +* installing *source* package ‘quantilogram’ ... +** package ‘quantilogram’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘quantilogram’ +* removing ‘/tmp/workdir/quantilogram/old/quantilogram.Rcheck/quantilogram’ + + +``` +# quantregGrowth + +
+ +* Version: 1.7-1 +* GitHub: NA +* Source code: https://github.com/cran/quantregGrowth +* Date/Publication: 2024-05-20 09:10:02 UTC +* Number of recursive dependencies: 37 + +Run `revdepcheck::cloud_details(, "quantregGrowth")` for more info + +
+ +## In both + +* checking whether package ‘quantregGrowth’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/quantregGrowth/new/quantregGrowth.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘quantregGrowth’ ... +** package ‘quantregGrowth’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +** inst +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘quantreg’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Execution halted +ERROR: lazy loading failed for package ‘quantregGrowth’ +* removing ‘/tmp/workdir/quantregGrowth/new/quantregGrowth.Rcheck/quantregGrowth’ + + +``` +### CRAN + +``` +* installing *source* package ‘quantregGrowth’ ... +** package ‘quantregGrowth’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data @@ -8087,10 +9673,10 @@ ERROR: lazy loading failed for package ‘rddtools’
-* Version: 0.2.8 +* Version: 0.2.9 * GitHub: https://github.com/ropensci/rdflib * Source code: https://github.com/cran/rdflib -* Date/Publication: 2023-12-19 12:10:02 UTC +* Date/Publication: 2024-08-17 06:00:05 UTC * Number of recursive dependencies: 94 Run `revdepcheck::cloud_details(, "rdflib")` for more info @@ -8215,228 +9801,467 @@ ERROR: configuration failed for package ‘redland’ ``` -# rms +# revert
-* Version: 6.8-1 -* GitHub: https://github.com/harrelfe/rms -* Source code: https://github.com/cran/rms -* Date/Publication: 2024-05-27 12:00:02 UTC -* Number of recursive dependencies: 145 +* Version: 0.0.1 +* GitHub: NA +* Source code: https://github.com/cran/revert +* Date/Publication: 2023-11-23 16:20:05 UTC +* Number of recursive dependencies: 73 -Run `revdepcheck::cloud_details(, "rms")` for more info +Run `revdepcheck::cloud_details(, "revert")` for more info
-## In both - -* checking whether package ‘rms’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/rms/new/rms.Rcheck/00install.out’ for details. - ``` - -* checking package dependencies ... NOTE - ``` - Package suggested but not available for checking: ‘rmsb’ - ``` - -## Installation +## Error before installation ### Devel ``` -* installing *source* package ‘rms’ ... -** package ‘rms’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C compiler: ‘gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ -using Fortran compiler: ‘GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ -gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o -gfortran -fpic -g -O2 -c lrmfit.f -o lrmfit.o -gfortran -fpic -g -O2 -c mlmats.f -o mlmats.o -gfortran -fpic -g -O2 -c ormuv.f -o ormuv.o +* using log directory ‘/tmp/workdir/revert/new/revert.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘revert/DESCRIPTION’ ... OK ... -** R -** demo -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘rms’ -* removing ‘/tmp/workdir/rms/new/rms.Rcheck/rms’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Packages required but not available: + 'BSgenome', 'BSgenome.Hsapiens.UCSC.hg38' + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + ``` ### CRAN ``` -* installing *source* package ‘rms’ ... -** package ‘rms’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C compiler: ‘gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ -using Fortran compiler: ‘GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ -gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o -gfortran -fpic -g -O2 -c lrmfit.f -o lrmfit.o -gfortran -fpic -g -O2 -c mlmats.f -o mlmats.o -gfortran -fpic -g -O2 -c ormuv.f -o ormuv.o +* using log directory ‘/tmp/workdir/revert/old/revert.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘revert/DESCRIPTION’ ... OK ... -** R -** demo -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘rms’ -* removing ‘/tmp/workdir/rms/old/rms.Rcheck/rms’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Packages required but not available: + 'BSgenome', 'BSgenome.Hsapiens.UCSC.hg38' + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + ``` -# rmsb +# RFLPtools
-* Version: 1.1-1 +* Version: 2.0 * GitHub: NA -* Source code: https://github.com/cran/rmsb -* Date/Publication: 2024-07-08 11:10:03 UTC -* Number of recursive dependencies: 135 +* Source code: https://github.com/cran/RFLPtools +* Date/Publication: 2022-02-08 09:40:02 UTC +* Number of recursive dependencies: 52 -Run `revdepcheck::cloud_details(, "rmsb")` for more info +Run `revdepcheck::cloud_details(, "RFLPtools")` for more info
-## In both - -* checking whether package ‘rmsb’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/rmsb/new/rmsb.Rcheck/00install.out’ for details. - ``` - -## Installation +## Error before installation ### Devel ``` -* installing *source* package ‘rmsb’ ... -** package ‘rmsb’ successfully unpacked and MD5 sums checked -** using staged installation -Error in loadNamespace(x) : there is no package called ‘rstantools’ -Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart -Execution halted -ERROR: configuration failed for package ‘rmsb’ -* removing ‘/tmp/workdir/rmsb/new/rmsb.Rcheck/rmsb’ - +* using log directory ‘/tmp/workdir/RFLPtools/new/RFLPtools.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘RFLPtools/DESCRIPTION’ ... OK +... +--- failed re-building ‘RFLPtools.Rmd’ -``` -### CRAN +SUMMARY: processing the following file failed: + ‘RFLPtools.Rmd’ -``` -* installing *source* package ‘rmsb’ ... -** package ‘rmsb’ successfully unpacked and MD5 sums checked -** using staged installation -Error in loadNamespace(x) : there is no package called ‘rstantools’ -Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart +Error: Vignette re-building failed. Execution halted -ERROR: configuration failed for package ‘rmsb’ -* removing ‘/tmp/workdir/rmsb/old/rmsb.Rcheck/rmsb’ - - -``` -# robmed -
+* DONE +Status: 1 ERROR, 1 WARNING, 2 NOTEs -* Version: 1.0.2 -* GitHub: https://github.com/aalfons/robmed -* Source code: https://github.com/cran/robmed -* Date/Publication: 2023-06-16 23:00:02 UTC -* Number of recursive dependencies: 60 -Run `revdepcheck::cloud_details(, "robmed")` for more info -
-## In both -* checking whether package ‘robmed’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/robmed/new/robmed.Rcheck/00install.out’ for details. - ``` +``` +### CRAN -## Installation +``` +* using log directory ‘/tmp/workdir/RFLPtools/old/RFLPtools.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘RFLPtools/DESCRIPTION’ ... OK +... +--- failed re-building ‘RFLPtools.Rmd’ -### Devel +SUMMARY: processing the following file failed: + ‘RFLPtools.Rmd’ -``` -* installing *source* package ‘robmed’ ... -** package ‘robmed’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Error: Vignette re-building failed. Execution halted -ERROR: lazy loading failed for package ‘robmed’ -* removing ‘/tmp/workdir/robmed/new/robmed.Rcheck/robmed’ + +* DONE +Status: 1 ERROR, 1 WARNING, 2 NOTEs -``` -### CRAN -``` -* installing *source* package ‘robmed’ ... -** package ‘robmed’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘robmed’ -* removing ‘/tmp/workdir/robmed/old/robmed.Rcheck/robmed’ ``` -# RPPASPACE +# Rgff
-* Version: 1.0.10 -* GitHub: https://github.com/MD-Anderson-Bioinformatics/rppaspace -* Source code: https://github.com/cran/RPPASPACE -* Date/Publication: 2023-10-19 21:30:08 UTC -* Number of recursive dependencies: 60 +* Version: 0.1.6 +* GitHub: NA +* Source code: https://github.com/cran/Rgff +* Date/Publication: 2022-09-30 10:40:02 UTC +* Number of recursive dependencies: 113 -Run `revdepcheck::cloud_details(, "RPPASPACE")` for more info +Run `revdepcheck::cloud_details(, "Rgff")` for more info
-## In both - -* checking whether package ‘RPPASPACE’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/RPPASPACE/new/RPPASPACE.Rcheck/00install.out’ for details. - ``` - -## Installation +## Error before installation + +### Devel + +``` +* using log directory ‘/tmp/workdir/Rgff/new/Rgff.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘Rgff/DESCRIPTION’ ... OK +... +--- failed re-building ‘Using_Rgff.Rmd’ + +SUMMARY: processing the following file failed: + ‘Using_Rgff.Rmd’ + +Error: Vignette re-building failed. +Execution halted + +* DONE +Status: 1 ERROR, 3 NOTEs + + + + + +``` +### CRAN + +``` +* using log directory ‘/tmp/workdir/Rgff/old/Rgff.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘Rgff/DESCRIPTION’ ... OK +... +--- failed re-building ‘Using_Rgff.Rmd’ + +SUMMARY: processing the following file failed: + ‘Using_Rgff.Rmd’ + +Error: Vignette re-building failed. +Execution halted + +* DONE +Status: 1 ERROR, 3 NOTEs + + + + + +``` +# RGraphSpace + +
+ +* Version: NA +* GitHub: NA +* Source code: https://github.com/cran/RGraphSpace +* Number of recursive dependencies: 65 + +Run `revdepcheck::cloud_details(, "RGraphSpace")` for more info + +
+ +## Error before installation + +### Devel + +``` + + + + + + +``` +### CRAN + +``` + + + + + + +``` +# rms + +
+ +* Version: NA +* GitHub: NA +* Source code: https://github.com/cran/rms +* Number of recursive dependencies: 145 + +Run `revdepcheck::cloud_details(, "rms")` for more info + +
+ +## Error before installation + +### Devel + +``` + + + + + + +``` +### CRAN + +``` + + + + + + +``` +# RNAseqQC + +
+ +* Version: 0.2.1 +* GitHub: https://github.com/frederikziebell/RNAseqQC +* Source code: https://github.com/cran/RNAseqQC +* Date/Publication: 2024-07-15 14:40:02 UTC +* Number of recursive dependencies: 162 + +Run `revdepcheck::cloud_details(, "RNAseqQC")` for more info + +
+ +## Error before installation + +### Devel + +``` +* using log directory ‘/tmp/workdir/RNAseqQC/new/RNAseqQC.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘RNAseqQC/DESCRIPTION’ ... OK +... +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Packages required but not available: 'ensembldb', 'ComplexHeatmap' + +Package suggested but not available for checking: ‘recount3’ + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +### CRAN + +``` +* using log directory ‘/tmp/workdir/RNAseqQC/old/RNAseqQC.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘RNAseqQC/DESCRIPTION’ ... OK +... +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Packages required but not available: 'ensembldb', 'ComplexHeatmap' + +Package suggested but not available for checking: ‘recount3’ + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +# robmed + +
+ +* Version: 1.0.2 +* GitHub: https://github.com/aalfons/robmed +* Source code: https://github.com/cran/robmed +* Date/Publication: 2023-06-16 23:00:02 UTC +* Number of recursive dependencies: 60 + +Run `revdepcheck::cloud_details(, "robmed")` for more info + +
+ +## In both + +* checking whether package ‘robmed’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/robmed/new/robmed.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘robmed’ ... +** package ‘robmed’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘robmed’ +* removing ‘/tmp/workdir/robmed/new/robmed.Rcheck/robmed’ + + +``` +### CRAN + +``` +* installing *source* package ‘robmed’ ... +** package ‘robmed’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘robmed’ +* removing ‘/tmp/workdir/robmed/old/robmed.Rcheck/robmed’ + + +``` +# RPPASPACE + +
+ +* Version: 1.0.10 +* GitHub: https://github.com/MD-Anderson-Bioinformatics/rppaspace +* Source code: https://github.com/cran/RPPASPACE +* Date/Publication: 2023-10-19 21:30:08 UTC +* Number of recursive dependencies: 60 + +Run `revdepcheck::cloud_details(, "RPPASPACE")` for more info + +
+ +## In both + +* checking whether package ‘RPPASPACE’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/RPPASPACE/new/RPPASPACE.Rcheck/00install.out’ for details. + ``` + +## Installation ### Devel @@ -8458,106 +10283,365 @@ ERROR: lazy loading failed for package ‘RPPASPACE’ ``` ### CRAN -``` -* installing *source* package ‘RPPASPACE’ ... -** package ‘RPPASPACE’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘RPPASPACE’ -* removing ‘/tmp/workdir/RPPASPACE/old/RPPASPACE.Rcheck/RPPASPACE’ +``` +* installing *source* package ‘RPPASPACE’ ... +** package ‘RPPASPACE’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘RPPASPACE’ +* removing ‘/tmp/workdir/RPPASPACE/old/RPPASPACE.Rcheck/RPPASPACE’ + + +``` +# RQdeltaCT + +
+ +* Version: 1.3.0 +* GitHub: NA +* Source code: https://github.com/cran/RQdeltaCT +* Date/Publication: 2024-04-17 15:50:02 UTC +* Number of recursive dependencies: 166 + +Run `revdepcheck::cloud_details(, "RQdeltaCT")` for more info + +
+ +## In both + +* checking whether package ‘RQdeltaCT’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/RQdeltaCT/new/RQdeltaCT.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘RQdeltaCT’ ... +** package ‘RQdeltaCT’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘RQdeltaCT’ +* removing ‘/tmp/workdir/RQdeltaCT/new/RQdeltaCT.Rcheck/RQdeltaCT’ + + +``` +### CRAN + +``` +* installing *source* package ‘RQdeltaCT’ ... +** package ‘RQdeltaCT’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘RQdeltaCT’ +* removing ‘/tmp/workdir/RQdeltaCT/old/RQdeltaCT.Rcheck/RQdeltaCT’ + + +``` +# rqPen + +
+ +* Version: 4.1.1 +* GitHub: https://github.com/bssherwood/rqpen +* Source code: https://github.com/cran/rqPen +* Date/Publication: 2024-06-04 13:30:01 UTC +* Number of recursive dependencies: 24 + +Run `revdepcheck::cloud_details(, "rqPen")` for more info + +
+ +## In both + +* checking whether package ‘rqPen’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/rqPen/new/rqPen.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘rqPen’ ... +** package ‘rqPen’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c solvebetaRcpp.cpp -o solvebetaRcpp.o +g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o rqPen.so RcppExports.o solvebetaRcpp.o -L/opt/R/4.3.1/lib/R/lib -lR +installing to /tmp/workdir/rqPen/new/rqPen.Rcheck/00LOCK-rqPen/00new/rqPen/libs +** R +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘rqPen’ +* removing ‘/tmp/workdir/rqPen/new/rqPen.Rcheck/rqPen’ + + +``` +### CRAN + +``` +* installing *source* package ‘rqPen’ ... +** package ‘rqPen’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c solvebetaRcpp.cpp -o solvebetaRcpp.o +g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o rqPen.so RcppExports.o solvebetaRcpp.o -L/opt/R/4.3.1/lib/R/lib -lR +installing to /tmp/workdir/rqPen/old/rqPen.Rcheck/00LOCK-rqPen/00new/rqPen/libs +** R +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘rqPen’ +* removing ‘/tmp/workdir/rqPen/old/rqPen.Rcheck/rqPen’ + + +``` +# Rraven + +
+ +* Version: 1.0.14 +* GitHub: https://github.com/maRce10/Rraven +* Source code: https://github.com/cran/Rraven +* Date/Publication: 2024-08-19 22:40:10 UTC +* Number of recursive dependencies: 90 + +Run `revdepcheck::cloud_details(, "Rraven")` for more info + +
+ +## Error before installation + +### Devel + +``` +* using log directory ‘/tmp/workdir/Rraven/new/Rraven.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘Rraven/DESCRIPTION’ ... OK +... +* checking extension type ... Package +* this is package ‘Rraven’ version ‘1.0.14’ +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package required but not available: ‘warbleR’ + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +### CRAN + +``` +* using log directory ‘/tmp/workdir/Rraven/old/Rraven.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘Rraven/DESCRIPTION’ ... OK +... +* checking extension type ... Package +* this is package ‘Rraven’ version ‘1.0.14’ +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package required but not available: ‘warbleR’ + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +# RRPP + +
+ +* Version: NA +* GitHub: NA +* Source code: https://github.com/cran/RRPP +* Number of recursive dependencies: 68 + +Run `revdepcheck::cloud_details(, "RRPP")` for more info + +
+ +## Error before installation + +### Devel + +``` + + + + + + +``` +### CRAN + +``` + + + + ``` -# RQdeltaCT +# rsolr
-* Version: 1.3.0 +* Version: 0.0.13 * GitHub: NA -* Source code: https://github.com/cran/RQdeltaCT -* Date/Publication: 2024-04-17 15:50:02 UTC -* Number of recursive dependencies: 165 +* Source code: https://github.com/cran/rsolr +* Date/Publication: 2022-05-18 07:10:02 UTC +* Number of recursive dependencies: 27 -Run `revdepcheck::cloud_details(, "RQdeltaCT")` for more info +Run `revdepcheck::cloud_details(, "rsolr")` for more info
-## In both - -* checking whether package ‘RQdeltaCT’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/RQdeltaCT/new/RQdeltaCT.Rcheck/00install.out’ for details. - ``` - -## Installation +## Error before installation ### Devel ``` -* installing *source* package ‘RQdeltaCT’ ... -** package ‘RQdeltaCT’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘RQdeltaCT’ -* removing ‘/tmp/workdir/RQdeltaCT/new/RQdeltaCT.Rcheck/RQdeltaCT’ +* using log directory ‘/tmp/workdir/rsolr/new/rsolr.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘rsolr/DESCRIPTION’ ... OK +... +* checking extension type ... Package +* this is package ‘rsolr’ version ‘0.0.13’ +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Packages required but not available: 'restfulr', 'rjson' + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + ``` ### CRAN ``` -* installing *source* package ‘RQdeltaCT’ ... -** package ‘RQdeltaCT’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘RQdeltaCT’ -* removing ‘/tmp/workdir/RQdeltaCT/old/RQdeltaCT.Rcheck/RQdeltaCT’ +* using log directory ‘/tmp/workdir/rsolr/old/rsolr.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘rsolr/DESCRIPTION’ ... OK +... +* checking extension type ... Package +* this is package ‘rsolr’ version ‘0.0.13’ +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Packages required but not available: 'restfulr', 'rjson' + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + ``` -# rqPen +# rstanarm
-* Version: 4.1.1 -* GitHub: https://github.com/bssherwood/rqpen -* Source code: https://github.com/cran/rqPen -* Date/Publication: 2024-06-04 13:30:01 UTC -* Number of recursive dependencies: 24 +* Version: 2.32.1 +* GitHub: https://github.com/stan-dev/rstanarm +* Source code: https://github.com/cran/rstanarm +* Date/Publication: 2024-01-18 23:00:03 UTC +* Number of recursive dependencies: 138 -Run `revdepcheck::cloud_details(, "rqPen")` for more info +Run `revdepcheck::cloud_details(, "rstanarm")` for more info
## In both -* checking whether package ‘rqPen’ can be installed ... ERROR +* checking whether package ‘rstanarm’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/rqPen/new/rqPen.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/rstanarm/new/rstanarm.Rcheck/00install.out’ for details. ``` ## Installation @@ -8565,61 +10649,68 @@ Run `revdepcheck::cloud_details(, "rqPen")` for more info ### Devel ``` -* installing *source* package ‘rqPen’ ... -** package ‘rqPen’ successfully unpacked and MD5 sums checked +* installing *source* package ‘rstanarm’ ... +** package ‘rstanarm’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c solvebetaRcpp.cpp -o solvebetaRcpp.o -g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o rqPen.so RcppExports.o solvebetaRcpp.o -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/rqPen/new/rqPen.Rcheck/00LOCK-rqPen/00new/rqPen/libs -** R -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘rqPen’ -* removing ‘/tmp/workdir/rqPen/new/rqPen.Rcheck/rqPen’ +using C++17 +"/opt/R/4.3.1/lib/R/bin/Rscript" -e "source(file.path('..', 'tools', 'make_cc.R')); make_cc(commandArgs(TRUE))" stan_files/bernoulli.stan +Wrote C++ file "stan_files/bernoulli.cc" + + +... +/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/stan/math/rev/fun/quad_form.hpp:88:16: required from here +/opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] + 654 | return internal::first_aligned::alignment),Derived>(m); + | ^~~~~~~~~ +g++: fatal error: Killed signal terminated program cc1plus +compilation terminated. +make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stan_files/continuous.o] Error 1 +rm stan_files/bernoulli.cc stan_files/binomial.cc stan_files/continuous.cc +ERROR: compilation failed for package ‘rstanarm’ +* removing ‘/tmp/workdir/rstanarm/new/rstanarm.Rcheck/rstanarm’ ``` ### CRAN ``` -* installing *source* package ‘rqPen’ ... -** package ‘rqPen’ successfully unpacked and MD5 sums checked +* installing *source* package ‘rstanarm’ ... +** package ‘rstanarm’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c solvebetaRcpp.cpp -o solvebetaRcpp.o -g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o rqPen.so RcppExports.o solvebetaRcpp.o -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/rqPen/old/rqPen.Rcheck/00LOCK-rqPen/00new/rqPen/libs -** R -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘rqPen’ -* removing ‘/tmp/workdir/rqPen/old/rqPen.Rcheck/rqPen’ +using C++17 +"/opt/R/4.3.1/lib/R/bin/Rscript" -e "source(file.path('..', 'tools', 'make_cc.R')); make_cc(commandArgs(TRUE))" stan_files/bernoulli.stan +Wrote C++ file "stan_files/bernoulli.cc" + + +... +/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/stan/math/rev/fun/quad_form.hpp:88:16: required from here +/opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] + 654 | return internal::first_aligned::alignment),Derived>(m); + | ^~~~~~~~~ +g++: fatal error: Killed signal terminated program cc1plus +compilation terminated. +make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stan_files/continuous.o] Error 1 +rm stan_files/bernoulli.cc stan_files/binomial.cc stan_files/continuous.cc +ERROR: compilation failed for package ‘rstanarm’ +* removing ‘/tmp/workdir/rstanarm/old/rstanarm.Rcheck/rstanarm’ ``` -# RRPP +# RTIGER
-* Version: NA +* Version: 2.1.0 * GitHub: NA -* Source code: https://github.com/cran/RRPP -* Number of recursive dependencies: 68 +* Source code: https://github.com/cran/RTIGER +* Date/Publication: 2023-03-29 09:20:02 UTC +* Number of recursive dependencies: 160 -Run `revdepcheck::cloud_details(, "RRPP")` for more info +Run `revdepcheck::cloud_details(, "RTIGER")` for more info
@@ -8628,7 +10719,27 @@ Run `revdepcheck::cloud_details(, "RRPP")` for more info ### Devel ``` - +* using log directory ‘/tmp/workdir/RTIGER/new/RTIGER.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘RTIGER/DESCRIPTION’ ... OK +... +* checking installed files from ‘inst/doc’ ... OK +* checking files in ‘vignettes’ ... OK +* checking examples ... OK +* checking for unstated dependencies in vignettes ... OK +* checking package vignettes in ‘inst/doc’ ... OK +* checking running R code from vignettes ... OK + ‘tutorial_RTIGER.Rmd’ using ‘UTF-8’... OK +* checking re-building of vignette outputs ... OK +* DONE +Status: 1 NOTE @@ -8638,88 +10749,184 @@ Run `revdepcheck::cloud_details(, "RRPP")` for more info ### CRAN ``` - +* using log directory ‘/tmp/workdir/RTIGER/old/RTIGER.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘RTIGER/DESCRIPTION’ ... OK +... +* checking installed files from ‘inst/doc’ ... OK +* checking files in ‘vignettes’ ... OK +* checking examples ... OK +* checking for unstated dependencies in vignettes ... OK +* checking package vignettes in ‘inst/doc’ ... OK +* checking running R code from vignettes ... OK + ‘tutorial_RTIGER.Rmd’ using ‘UTF-8’... OK +* checking re-building of vignette outputs ... OK +* DONE +Status: 1 NOTE ``` -# rstanarm +# rTwig
-* Version: 2.32.1 -* GitHub: https://github.com/stan-dev/rstanarm -* Source code: https://github.com/cran/rstanarm -* Date/Publication: 2024-01-18 23:00:03 UTC -* Number of recursive dependencies: 138 +* Version: 1.1.0 +* GitHub: https://github.com/aidanmorales/rTwig +* Source code: https://github.com/cran/rTwig +* Date/Publication: 2024-08-21 00:50:02 UTC +* Number of recursive dependencies: 147 -Run `revdepcheck::cloud_details(, "rstanarm")` for more info +Run `revdepcheck::cloud_details(, "rTwig")` for more info
## In both -* checking whether package ‘rstanarm’ can be installed ... ERROR +* checking whether package ‘rTwig’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/rstanarm/new/rstanarm.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/rTwig/new/rTwig.Rcheck/00install.out’ for details. ``` -## Installation +## Installation + +### Devel + +``` +* installing *source* package ‘rTwig’ ... +** package ‘rTwig’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c box_counting.cpp -o box_counting.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c colors.cpp -o colors.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c convex_hull.cpp -o convex_hull.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c cylinder_mesh.cpp -o cylinder_mesh.o +... +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘rTwig’ +* removing ‘/tmp/workdir/rTwig/new/rTwig.Rcheck/rTwig’ + + +``` +### CRAN + +``` +* installing *source* package ‘rTwig’ ... +** package ‘rTwig’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c box_counting.cpp -o box_counting.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c colors.cpp -o colors.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c convex_hull.cpp -o convex_hull.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c cylinder_mesh.cpp -o cylinder_mesh.o +... +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘rTwig’ +* removing ‘/tmp/workdir/rTwig/old/rTwig.Rcheck/rTwig’ + + +``` +# RVA + +
+ +* Version: 0.0.5 +* GitHub: https://github.com/THERMOSTATS/RVA +* Source code: https://github.com/cran/RVA +* Date/Publication: 2021-11-01 21:40:02 UTC +* Number of recursive dependencies: 207 + +Run `revdepcheck::cloud_details(, "RVA")` for more info + +
+ +## Error before installation ### Devel ``` -* installing *source* package ‘rstanarm’ ... -** package ‘rstanarm’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ -using C++17 -"/opt/R/4.3.1/lib/R/bin/Rscript" -e "source(file.path('..', 'tools', 'make_cc.R')); make_cc(commandArgs(TRUE))" stan_files/bernoulli.stan -Wrote C++ file "stan_files/bernoulli.cc" +* using log directory ‘/tmp/workdir/RVA/new/RVA.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘RVA/DESCRIPTION’ ... OK +... +* this is package ‘RVA’ version ‘0.0.5’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Packages required but not available: 'ComplexHeatmap', 'rWikiPathways' + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + -... -/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:10: required from here -/opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] - 654 | return internal::first_aligned::alignment),Derived>(m); - | ^~~~~~~~~ -g++: fatal error: Killed signal terminated program cc1plus -compilation terminated. -make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stan_files/bernoulli.o] Error 1 -rm stan_files/bernoulli.cc -ERROR: compilation failed for package ‘rstanarm’ -* removing ‘/tmp/workdir/rstanarm/new/rstanarm.Rcheck/rstanarm’ ``` ### CRAN ``` -* installing *source* package ‘rstanarm’ ... -** package ‘rstanarm’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ -using C++17 -"/opt/R/4.3.1/lib/R/bin/Rscript" -e "source(file.path('..', 'tools', 'make_cc.R')); make_cc(commandArgs(TRUE))" stan_files/bernoulli.stan -Wrote C++ file "stan_files/bernoulli.cc" +* using log directory ‘/tmp/workdir/RVA/old/RVA.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘RVA/DESCRIPTION’ ... OK +... +* this is package ‘RVA’ version ‘0.0.5’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Packages required but not available: 'ComplexHeatmap', 'rWikiPathways' + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + -... -/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:10: required from here -/opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] - 654 | return internal::first_aligned::alignment),Derived>(m); - | ^~~~~~~~~ -g++: fatal error: Killed signal terminated program cc1plus -compilation terminated. -make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stan_files/bernoulli.o] Error 1 -rm stan_files/bernoulli.cc -ERROR: compilation failed for package ‘rstanarm’ -* removing ‘/tmp/workdir/rstanarm/old/rstanarm.Rcheck/rstanarm’ ``` @@ -8861,54 +11068,65 @@ Run `revdepcheck::cloud_details(, "scCustomize")` for more info
-## In both +## Error before installation -* checking whether package ‘scCustomize’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/scCustomize/new/scCustomize.Rcheck/00install.out’ for details. - ``` +### Devel -* checking package dependencies ... NOTE - ``` - Package suggested but not available for checking: ‘Nebulosa’ - ``` +``` +* using log directory ‘/tmp/workdir/scCustomize/new/scCustomize.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘scCustomize/DESCRIPTION’ ... OK +... +* checking if there is a namespace ... OK +* checking for executable files ... OK +* checking for hidden files and directories ... OK +* checking for portable file names ... OK +* checking for sufficient/correct file permissions ... OK +* checking whether package ‘scCustomize’ can be installed ... ERROR +Installation failed. +See ‘/tmp/workdir/scCustomize/new/scCustomize.Rcheck/00install.out’ for details. +* DONE +Status: 1 ERROR, 1 NOTE -## Installation -### Devel -``` -* installing *source* package ‘scCustomize’ ... -** package ‘scCustomize’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘SeuratObject’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is being loaded, but >= 1.6.4 is required -Execution halted -ERROR: lazy loading failed for package ‘scCustomize’ -* removing ‘/tmp/workdir/scCustomize/new/scCustomize.Rcheck/scCustomize’ ``` ### CRAN ``` -* installing *source* package ‘scCustomize’ ... -** package ‘scCustomize’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘SeuratObject’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - namespace ‘Matrix’ 1.5-4.1 is being loaded, but >= 1.6.4 is required -Execution halted -ERROR: lazy loading failed for package ‘scCustomize’ -* removing ‘/tmp/workdir/scCustomize/old/scCustomize.Rcheck/scCustomize’ +* using log directory ‘/tmp/workdir/scCustomize/old/scCustomize.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘scCustomize/DESCRIPTION’ ... OK +... +* checking if there is a namespace ... OK +* checking for executable files ... OK +* checking for hidden files and directories ... OK +* checking for portable file names ... OK +* checking for sufficient/correct file permissions ... OK +* checking whether package ‘scCustomize’ can be installed ... ERROR +Installation failed. +See ‘/tmp/workdir/scCustomize/old/scCustomize.Rcheck/00install.out’ for details. +* DONE +Status: 1 ERROR, 1 NOTE + + + ``` @@ -9183,6 +11401,82 @@ ERROR: lazy loading failed for package ‘SCIntRuler’ * removing ‘/tmp/workdir/SCIntRuler/old/SCIntRuler.Rcheck/SCIntRuler’ +``` +# scITD + +
+ +* Version: 1.0.4 +* GitHub: NA +* Source code: https://github.com/cran/scITD +* Date/Publication: 2023-09-08 16:00:02 UTC +* Number of recursive dependencies: 233 + +Run `revdepcheck::cloud_details(, "scITD")` for more info + +
+ +## Error before installation + +### Devel + +``` +* using log directory ‘/tmp/workdir/scITD/new/scITD.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘scITD/DESCRIPTION’ ... OK +... +* checking package dependencies ... ERROR +Package required but not available: ‘ComplexHeatmap’ + +Packages suggested but not available for checking: + 'simplifyEnrichment', 'conos', 'pagoda2' + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +### CRAN + +``` +* using log directory ‘/tmp/workdir/scITD/old/scITD.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘scITD/DESCRIPTION’ ... OK +... +* checking package dependencies ... ERROR +Package required but not available: ‘ComplexHeatmap’ + +Packages suggested but not available for checking: + 'simplifyEnrichment', 'conos', 'pagoda2' + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + ``` # scMappR @@ -9353,22 +11647,98 @@ ERROR: lazy loading failed for package ‘SeBR’ * removing ‘/tmp/workdir/SeBR/new/SeBR.Rcheck/SeBR’ -``` -### CRAN +``` +### CRAN + +``` +* installing *source* package ‘SeBR’ ... +** package ‘SeBR’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘SeBR’ +* removing ‘/tmp/workdir/SeBR/old/SeBR.Rcheck/SeBR’ + + +``` +# SeedMatchR + +
+ +* Version: 1.1.1 +* GitHub: NA +* Source code: https://github.com/cran/SeedMatchR +* Date/Publication: 2023-10-24 20:30:02 UTC +* Number of recursive dependencies: 167 + +Run `revdepcheck::cloud_details(, "SeedMatchR")` for more info + +
+ +## Error before installation + +### Devel + +``` +* using log directory ‘/tmp/workdir/SeedMatchR/new/SeedMatchR.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘SeedMatchR/DESCRIPTION’ ... OK +... +* this is package ‘SeedMatchR’ version ‘1.1.1’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Packages required but not available: 'msa', 'GenomicFeatures' + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +### CRAN + +``` +* using log directory ‘/tmp/workdir/SeedMatchR/old/SeedMatchR.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘SeedMatchR/DESCRIPTION’ ... OK +... +* this is package ‘SeedMatchR’ version ‘1.1.1’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Packages required but not available: 'msa', 'GenomicFeatures' + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + -``` -* installing *source* package ‘SeBR’ ... -** package ‘SeBR’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘SeBR’ -* removing ‘/tmp/workdir/SeBR/old/SeBR.Rcheck/SeBR’ ``` @@ -9554,67 +11924,79 @@ ERROR: lazy loading failed for package ‘shinyTempSignal’ ``` -# shrink +# sigminer
-* Version: 1.2.3 -* GitHub: https://github.com/biometrician/shrink -* Source code: https://github.com/cran/shrink -* Date/Publication: 2023-10-31 12:30:02 UTC -* Number of recursive dependencies: 80 +* Version: 2.3.1 +* GitHub: https://github.com/ShixiangWang/sigminer +* Source code: https://github.com/cran/sigminer +* Date/Publication: 2024-05-11 08:50:02 UTC +* Number of recursive dependencies: 209 -Run `revdepcheck::cloud_details(, "shrink")` for more info +Run `revdepcheck::cloud_details(, "sigminer")` for more info
-## In both - -* checking whether package ‘shrink’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/shrink/new/shrink.Rcheck/00install.out’ for details. - ``` - -## Installation +## Error before installation ### Devel ``` -* installing *source* package ‘shrink’ ... -** package ‘shrink’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘shrink’ -* removing ‘/tmp/workdir/shrink/new/shrink.Rcheck/shrink’ +* using log directory ‘/tmp/workdir/sigminer/new/sigminer.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘sigminer/DESCRIPTION’ ... OK +... +* checking files in ‘vignettes’ ... OK +* checking examples ... OK +* checking for unstated dependencies in vignettes ... OK +* checking package vignettes in ‘inst/doc’ ... OK +* checking running R code from vignettes ... OK + ‘cnsignature.Rmd’ using ‘UTF-8’... OK + ‘sigminer.Rmd’ using ‘UTF-8’... OK +* checking re-building of vignette outputs ... OK +* DONE +Status: 2 NOTEs + + + ``` ### CRAN ``` -* installing *source* package ‘shrink’ ... -** package ‘shrink’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘shrink’ -* removing ‘/tmp/workdir/shrink/old/shrink.Rcheck/shrink’ +* using log directory ‘/tmp/workdir/sigminer/old/sigminer.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘sigminer/DESCRIPTION’ ... OK +... +* checking files in ‘vignettes’ ... OK +* checking examples ... OK +* checking for unstated dependencies in vignettes ... OK +* checking package vignettes in ‘inst/doc’ ... OK +* checking running R code from vignettes ... OK + ‘cnsignature.Rmd’ using ‘UTF-8’... OK + ‘sigminer.Rmd’ using ‘UTF-8’... OK +* checking re-building of vignette outputs ... OK +* DONE +Status: 2 NOTEs + + + ``` @@ -9770,51 +12152,65 @@ Run `revdepcheck::cloud_details(, "SNPassoc")` for more info
-## In both - -* checking whether package ‘SNPassoc’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/SNPassoc/new/SNPassoc.Rcheck/00install.out’ for details. - ``` - -## Installation +## Error before installation ### Devel ``` -* installing *source* package ‘SNPassoc’ ... -** package ‘SNPassoc’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘SNPassoc’ -* removing ‘/tmp/workdir/SNPassoc/new/SNPassoc.Rcheck/SNPassoc’ +* using log directory ‘/tmp/workdir/SNPassoc/new/SNPassoc.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘SNPassoc/DESCRIPTION’ ... OK +... +* checking if there is a namespace ... OK +* checking for executable files ... OK +* checking for hidden files and directories ... OK +* checking for portable file names ... OK +* checking for sufficient/correct file permissions ... OK +* checking whether package ‘SNPassoc’ can be installed ... ERROR +Installation failed. +See ‘/tmp/workdir/SNPassoc/new/SNPassoc.Rcheck/00install.out’ for details. +* DONE +Status: 1 ERROR, 1 NOTE + + + ``` ### CRAN ``` -* installing *source* package ‘SNPassoc’ ... -** package ‘SNPassoc’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘SNPassoc’ -* removing ‘/tmp/workdir/SNPassoc/old/SNPassoc.Rcheck/SNPassoc’ +* using log directory ‘/tmp/workdir/SNPassoc/old/SNPassoc.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘SNPassoc/DESCRIPTION’ ... OK +... +* checking if there is a namespace ... OK +* checking for executable files ... OK +* checking for hidden files and directories ... OK +* checking for portable file names ... OK +* checking for sufficient/correct file permissions ... OK +* checking whether package ‘SNPassoc’ can be installed ... ERROR +Installation failed. +See ‘/tmp/workdir/SNPassoc/old/SNPassoc.Rcheck/00install.out’ for details. +* DONE +Status: 1 ERROR, 1 NOTE + + + ``` @@ -10044,45 +12440,197 @@ Run `revdepcheck::cloud_details(, "SoupX")` for more info See ‘/tmp/workdir/SoupX/new/SoupX.Rcheck/00install.out’ for details. ``` -## Installation +## Installation + +### Devel + +``` +* installing *source* package ‘SoupX’ ... +** package ‘SoupX’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘SoupX’ +* removing ‘/tmp/workdir/SoupX/new/SoupX.Rcheck/SoupX’ + + +``` +### CRAN + +``` +* installing *source* package ‘SoupX’ ... +** package ‘SoupX’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘SoupX’ +* removing ‘/tmp/workdir/SoupX/old/SoupX.Rcheck/SoupX’ + + +``` +# SpatialDDLS + +
+ +* Version: 1.0.2 +* GitHub: https://github.com/diegommcc/SpatialDDLS +* Source code: https://github.com/cran/SpatialDDLS +* Date/Publication: 2024-04-26 16:10:02 UTC +* Number of recursive dependencies: 207 + +Run `revdepcheck::cloud_details(, "SpatialDDLS")` for more info + +
+ +## Error before installation + +### Devel + +``` +* using log directory ‘/tmp/workdir/SpatialDDLS/new/SpatialDDLS.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘SpatialDDLS/DESCRIPTION’ ... OK +... +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package required but not available: ‘SpatialExperiment’ + +Package suggested but not available for checking: ‘ComplexHeatmap’ + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +### CRAN + +``` +* using log directory ‘/tmp/workdir/SpatialDDLS/old/SpatialDDLS.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘SpatialDDLS/DESCRIPTION’ ... OK +... +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package required but not available: ‘SpatialExperiment’ + +Package suggested but not available for checking: ‘ComplexHeatmap’ + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +# speakeasyR + +
+ +* Version: 0.1.3 +* GitHub: https://github.com/SpeakEasy-2/speakeasyR +* Source code: https://github.com/cran/speakeasyR +* Date/Publication: 2024-08-20 09:40:06 UTC +* Number of recursive dependencies: 138 + +Run `revdepcheck::cloud_details(, "speakeasyR")` for more info + +
+ +## Error before installation + +### Devel + +``` +* using log directory ‘/tmp/workdir/speakeasyR/new/speakeasyR.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘speakeasyR/DESCRIPTION’ ... OK +... +* checking for unstated dependencies in ‘tests’ ... OK +* checking tests ... OK + Running ‘testthat.R’ +* checking for unstated dependencies in vignettes ... OK +* checking package vignettes in ‘inst/doc’ ... OK +* checking running R code from vignettes ... OK + ‘speakeasyR.Rmd’ using ‘UTF-8’... OK +* checking re-building of vignette outputs ... OK +* DONE +Status: 1 NOTE + -### Devel -``` -* installing *source* package ‘SoupX’ ... -** package ‘SoupX’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘SoupX’ -* removing ‘/tmp/workdir/SoupX/new/SoupX.Rcheck/SoupX’ ``` ### CRAN ``` -* installing *source* package ‘SoupX’ ... -** package ‘SoupX’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘SoupX’ -* removing ‘/tmp/workdir/SoupX/old/SoupX.Rcheck/SoupX’ +* using log directory ‘/tmp/workdir/speakeasyR/old/speakeasyR.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘speakeasyR/DESCRIPTION’ ... OK +... +* checking for unstated dependencies in ‘tests’ ... OK +* checking tests ... OK + Running ‘testthat.R’ +* checking for unstated dependencies in vignettes ... OK +* checking package vignettes in ‘inst/doc’ ... OK +* checking running R code from vignettes ... OK + ‘speakeasyR.Rmd’ using ‘UTF-8’... OK +* checking re-building of vignette outputs ... OK +* DONE +Status: 1 NOTE + + + ``` @@ -10300,11 +12848,11 @@ ERROR: lazy loading failed for package ‘statsr’
-* Version: 0.6 -* GitHub: NA +* Version: 0.7 +* GitHub: https://github.com/robjhyndman/stR * Source code: https://github.com/cran/stR -* Date/Publication: 2023-08-10 17:10:02 UTC -* Number of recursive dependencies: 189 +* Date/Publication: 2024-07-28 13:30:01 UTC +* Number of recursive dependencies: 191 Run `revdepcheck::cloud_details(, "stR")` for more info @@ -10331,7 +12879,6 @@ Run `revdepcheck::cloud_details(, "stR")` for more info *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading -Warning: replacing previous import ‘Matrix::det’ by ‘SparseM::det’ when loading ‘stR’ Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace @@ -10352,7 +12899,6 @@ ERROR: lazy loading failed for package ‘stR’ *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading -Warning: replacing previous import ‘Matrix::det’ by ‘SparseM::det’ when loading ‘stR’ Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace @@ -10405,38 +12951,262 @@ ERROR: lazy loading failed for package ‘STREAK’ * removing ‘/tmp/workdir/STREAK/new/STREAK.Rcheck/STREAK’ -``` -### CRAN +``` +### CRAN + +``` +* installing *source* package ‘STREAK’ ... +** package ‘STREAK’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.1.1 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘STREAK’ +* removing ‘/tmp/workdir/STREAK/old/STREAK.Rcheck/STREAK’ + + +``` +# streamDAG + +
+ +* Version: 1.5 +* GitHub: NA +* Source code: https://github.com/cran/streamDAG +* Date/Publication: 2023-10-06 18:50:02 UTC +* Number of recursive dependencies: 132 + +Run `revdepcheck::cloud_details(, "streamDAG")` for more info + +
+ +## Error before installation + +### Devel + +``` +* using log directory ‘/tmp/workdir/streamDAG/new/streamDAG.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘streamDAG/DESCRIPTION’ ... OK +* this is package ‘streamDAG’ version ‘1.5’ +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package required but not available: ‘asbio’ + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +### CRAN + +``` +* using log directory ‘/tmp/workdir/streamDAG/old/streamDAG.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘streamDAG/DESCRIPTION’ ... OK +* this is package ‘streamDAG’ version ‘1.5’ +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package required but not available: ‘asbio’ + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +# SubtypeDrug + +
+ +* Version: 0.1.9 +* GitHub: https://github.com/hanjunwei-lab/SubtypeDrug +* Source code: https://github.com/cran/SubtypeDrug +* Date/Publication: 2024-04-17 06:40:02 UTC +* Number of recursive dependencies: 153 + +Run `revdepcheck::cloud_details(, "SubtypeDrug")` for more info + +
+ +## Error before installation + +### Devel + +``` +* using log directory ‘/tmp/workdir/SubtypeDrug/new/SubtypeDrug.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘SubtypeDrug/DESCRIPTION’ ... OK +... +* this is package ‘SubtypeDrug’ version ‘0.1.9’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package required but not available: ‘ChemmineR’ + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +### CRAN + +``` +* using log directory ‘/tmp/workdir/SubtypeDrug/old/SubtypeDrug.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘SubtypeDrug/DESCRIPTION’ ... OK +... +* this is package ‘SubtypeDrug’ version ‘0.1.9’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package required but not available: ‘ChemmineR’ + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +# tbm + +
+ +* Version: 0.3-6 +* GitHub: NA +* Source code: https://github.com/cran/tbm +* Date/Publication: 2024-04-17 12:10:02 UTC +* Number of recursive dependencies: 47 + +Run `revdepcheck::cloud_details(, "tbm")` for more info + +
+ +## Error before installation + +### Devel + +``` +* using log directory ‘/tmp/workdir/tbm/new/tbm.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘tbm/DESCRIPTION’ ... OK +... +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Packages required but not available: 'mlt', 'coneproj' + +Package suggested but not available for checking: ‘tram’ + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +### CRAN + +``` +* using log directory ‘/tmp/workdir/tbm/old/tbm.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘tbm/DESCRIPTION’ ... OK +... +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Packages required but not available: 'mlt', 'coneproj' + +Package suggested but not available for checking: ‘tram’ + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + -``` -* installing *source* package ‘STREAK’ ... -** package ‘STREAK’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.1.1 is required -Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace -Execution halted -ERROR: lazy loading failed for package ‘STREAK’ -* removing ‘/tmp/workdir/STREAK/old/STREAK.Rcheck/STREAK’ ``` -# streamDAG +# TH.data
-* Version: 1.5 +* Version: 1.1-2 * GitHub: NA -* Source code: https://github.com/cran/streamDAG -* Date/Publication: 2023-10-06 18:50:02 UTC -* Number of recursive dependencies: 132 +* Source code: https://github.com/cran/TH.data +* Date/Publication: 2023-04-17 22:10:03 UTC +* Number of recursive dependencies: 100 -Run `revdepcheck::cloud_details(, "streamDAG")` for more info +Run `revdepcheck::cloud_details(, "TH.data")` for more info
@@ -10445,7 +13215,7 @@ Run `revdepcheck::cloud_details(, "streamDAG")` for more info ### Devel ``` -* using log directory ‘/tmp/workdir/streamDAG/new/streamDAG.Rcheck’ +* using log directory ‘/tmp/workdir/TH.data/new/TH.data.Rcheck’ * using R version 4.3.1 (2023-06-16) * using platform: x86_64-pc-linux-gnu (64-bit) * R was compiled by @@ -10454,16 +13224,18 @@ Run `revdepcheck::cloud_details(, "streamDAG")` for more info * running under: Ubuntu 22.04.4 LTS * using session charset: UTF-8 * using option ‘--no-manual’ -* checking for file ‘streamDAG/DESCRIPTION’ ... OK -* this is package ‘streamDAG’ version ‘1.5’ -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘asbio’ +* checking for file ‘TH.data/DESCRIPTION’ ... OK +... + When sourcing ‘blood_loss_report.R’: +Error: package ‘mlt’ required by ‘trtf’ could not be found +Execution halted -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. + ‘blood_loss_report.Rnw’ using ‘UTF-8’... failed +* checking re-building of vignette outputs ... NOTE +Note: skipping ‘blood_loss_report.Rnw’ due to unavailable dependencies: + 'tram', 'rms' * DONE -Status: 1 ERROR +Status: 1 ERROR, 3 NOTEs @@ -10473,7 +13245,7 @@ Status: 1 ERROR ### CRAN ``` -* using log directory ‘/tmp/workdir/streamDAG/old/streamDAG.Rcheck’ +* using log directory ‘/tmp/workdir/TH.data/old/TH.data.Rcheck’ * using R version 4.3.1 (2023-06-16) * using platform: x86_64-pc-linux-gnu (64-bit) * R was compiled by @@ -10482,16 +13254,18 @@ Status: 1 ERROR * running under: Ubuntu 22.04.4 LTS * using session charset: UTF-8 * using option ‘--no-manual’ -* checking for file ‘streamDAG/DESCRIPTION’ ... OK -* this is package ‘streamDAG’ version ‘1.5’ -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘asbio’ +* checking for file ‘TH.data/DESCRIPTION’ ... OK +... + When sourcing ‘blood_loss_report.R’: +Error: package ‘mlt’ required by ‘trtf’ could not be found +Execution halted -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. + ‘blood_loss_report.Rnw’ using ‘UTF-8’... failed +* checking re-building of vignette outputs ... NOTE +Note: skipping ‘blood_loss_report.Rnw’ due to unavailable dependencies: + 'tram', 'rms' * DONE -Status: 1 ERROR +Status: 1 ERROR, 3 NOTEs @@ -10506,7 +13280,7 @@ Status: 1 ERROR * GitHub: https://github.com/stemangiola/tidyseurat * Source code: https://github.com/cran/tidyseurat * Date/Publication: 2024-01-10 04:50:02 UTC -* Number of recursive dependencies: 207 +* Number of recursive dependencies: 208 Run `revdepcheck::cloud_details(, "tidyseurat")` for more info @@ -10628,71 +13402,151 @@ ERROR: lazy loading failed for package ‘tidyvpc’
-* Version: 1.0-4 +* Version: 1.0-5 * GitHub: NA * Source code: https://github.com/cran/tram -* Date/Publication: 2024-05-13 14:40:02 UTC -* Number of recursive dependencies: 141 +* Date/Publication: 2024-08-17 15:40:02 UTC +* Number of recursive dependencies: 170 Run `revdepcheck::cloud_details(, "tram")` for more info
-## In both +## Error before installation -* checking whether package ‘tram’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/tram/new/tram.Rcheck/00install.out’ for details. - ``` +### Devel -## Installation +``` +* using log directory ‘/tmp/workdir/tram/new/tram.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘tram/DESCRIPTION’ ... OK +... +* this is package ‘tram’ version ‘1.0-5’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package required but not available: ‘mlt’ + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +### CRAN + +``` +* using log directory ‘/tmp/workdir/tram/old/tram.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘tram/DESCRIPTION’ ... OK +... +* this is package ‘tram’ version ‘1.0-5’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package required but not available: ‘mlt’ + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +# tramME + +
+ +* Version: 1.0.6 +* GitHub: NA +* Source code: https://github.com/cran/tramME +* Date/Publication: 2024-07-02 16:00:02 UTC +* Number of recursive dependencies: 50 + +Run `revdepcheck::cloud_details(, "tramME")` for more info + +
+ +## Error before installation ### Devel ``` -* installing *source* package ‘tram’ ... -** package ‘tram’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C compiler: ‘gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ -gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c init.c -o init.o -gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c pnormMRS.c -o pnormMRS.o -gcc -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o tram.so init.o pnormMRS.o -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/tram/new/tram.Rcheck/00LOCK-tram/00new/tram/libs -** R -** demo -** inst -** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘mlt’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - there is no package called ‘coneproj’ -Execution halted -ERROR: lazy loading failed for package ‘tram’ -* removing ‘/tmp/workdir/tram/new/tram.Rcheck/tram’ +* using log directory ‘/tmp/workdir/tramME/new/tramME.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘tramME/DESCRIPTION’ ... OK +... +* this is package ‘tramME’ version ‘1.0.6’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Packages required but not available: 'tram', 'mlt', 'coneproj' + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + ``` ### CRAN ``` -* installing *source* package ‘tram’ ... -** package ‘tram’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C compiler: ‘gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ -gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c init.c -o init.o -gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c pnormMRS.c -o pnormMRS.o -gcc -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o tram.so init.o pnormMRS.o -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR -installing to /tmp/workdir/tram/old/tram.Rcheck/00LOCK-tram/00new/tram/libs -** R -** demo -** inst -** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘mlt’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - there is no package called ‘coneproj’ -Execution halted -ERROR: lazy loading failed for package ‘tram’ -* removing ‘/tmp/workdir/tram/old/tram.Rcheck/tram’ +* using log directory ‘/tmp/workdir/tramME/old/tramME.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘tramME/DESCRIPTION’ ... OK +... +* this is package ‘tramME’ version ‘1.0.6’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Packages required but not available: 'tram', 'mlt', 'coneproj' + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + ``` @@ -10710,110 +13564,141 @@ Run `revdepcheck::cloud_details(, "tramnet")` for more info
-## In both - -* checking whether package ‘tramnet’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/tramnet/new/tramnet.Rcheck/00install.out’ for details. - ``` - -## Installation +## Error before installation ### Devel ``` -* installing *source* package ‘tramnet’ ... -** package ‘tramnet’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘mlt’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - there is no package called ‘coneproj’ -Execution halted -ERROR: lazy loading failed for package ‘tramnet’ -* removing ‘/tmp/workdir/tramnet/new/tramnet.Rcheck/tramnet’ +* using log directory ‘/tmp/workdir/tramnet/new/tramnet.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘tramnet/DESCRIPTION’ ... OK +... +* this is package ‘tramnet’ version ‘0.0-8’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Packages required but not available: 'tram', 'mlt' + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + ``` ### CRAN ``` -* installing *source* package ‘tramnet’ ... -** package ‘tramnet’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘mlt’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - there is no package called ‘coneproj’ -Execution halted -ERROR: lazy loading failed for package ‘tramnet’ -* removing ‘/tmp/workdir/tramnet/old/tramnet.Rcheck/tramnet’ +* using log directory ‘/tmp/workdir/tramnet/old/tramnet.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘tramnet/DESCRIPTION’ ... OK +... +* this is package ‘tramnet’ version ‘0.0-8’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Packages required but not available: 'tram', 'mlt' + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + ``` # tramvs -
+
+ +* Version: 0.0-6 +* GitHub: NA +* Source code: https://github.com/cran/tramvs +* Date/Publication: 2024-09-04 13:50:02 UTC +* Number of recursive dependencies: 106 + +Run `revdepcheck::cloud_details(, "tramvs")` for more info + +
+ +## Error before installation + +### Devel + +``` +* using log directory ‘/tmp/workdir/tramvs/new/tramvs.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘tramvs/DESCRIPTION’ ... OK +... +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Packages required but not available: 'tram', 'cotram' + +Packages suggested but not available for checking: 'tramnet', 'mlt' -* Version: 0.0-4 -* GitHub: NA -* Source code: https://github.com/cran/tramvs -* Date/Publication: 2023-03-10 14:20:02 UTC -* Number of recursive dependencies: 83 +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR -Run `revdepcheck::cloud_details(, "tramvs")` for more info -
-## In both -* checking whether package ‘tramvs’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/tramvs/new/tramvs.Rcheck/00install.out’ for details. - ``` -* checking package dependencies ... NOTE - ``` - Package suggested but not available for checking: ‘tramnet’ - ``` +``` +### CRAN -## Installation +``` +* using log directory ‘/tmp/workdir/tramvs/old/tramvs.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘tramvs/DESCRIPTION’ ... OK +... +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Packages required but not available: 'tram', 'cotram' -### Devel +Packages suggested but not available for checking: 'tramnet', 'mlt' -``` -* installing *source* package ‘tramvs’ ... -** package ‘tramvs’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘mlt’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - there is no package called ‘coneproj’ -Execution halted -ERROR: lazy loading failed for package ‘tramvs’ -* removing ‘/tmp/workdir/tramvs/new/tramvs.Rcheck/tramvs’ +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR -``` -### CRAN -``` -* installing *source* package ‘tramvs’ ... -** package ‘tramvs’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘mlt’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - there is no package called ‘coneproj’ -Execution halted -ERROR: lazy loading failed for package ‘tramvs’ -* removing ‘/tmp/workdir/tramvs/old/tramvs.Rcheck/tramvs’ ``` @@ -10951,10 +13836,10 @@ ERROR: lazy loading failed for package ‘TSrepr’
-* Version: 2.6 +* Version: 2.6.1 * GitHub: NA * Source code: https://github.com/cran/twang -* Date/Publication: 2023-12-06 00:30:02 UTC +* Date/Publication: 2024-07-22 16:10:01 UTC * Number of recursive dependencies: 53 Run `revdepcheck::cloud_details(, "twang")` for more info @@ -11020,6 +13905,222 @@ ERROR: lazy loading failed for package ‘twang’ * removing ‘/tmp/workdir/twang/old/twang.Rcheck/twang’ +``` +# TwitterAutomatedTrading + +
+ +* Version: 0.1.0 +* GitHub: https://github.com/lucasgodeiro/TwitterAutomatedTrading +* Source code: https://github.com/cran/TwitterAutomatedTrading +* Date/Publication: 2020-05-31 09:50:13 UTC +* Number of recursive dependencies: 66 + +Run `revdepcheck::cloud_details(, "TwitterAutomatedTrading")` for more info + +
+ +## In both + +* checking whether package ‘TwitterAutomatedTrading’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/TwitterAutomatedTrading/new/TwitterAutomatedTrading.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘TwitterAutomatedTrading’ ... +** package ‘TwitterAutomatedTrading’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) : + there is no package called ‘rjson’ +Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart +Execution halted +ERROR: lazy loading failed for package ‘TwitterAutomatedTrading’ +* removing ‘/tmp/workdir/TwitterAutomatedTrading/new/TwitterAutomatedTrading.Rcheck/TwitterAutomatedTrading’ + + +``` +### CRAN + +``` +* installing *source* package ‘TwitterAutomatedTrading’ ... +** package ‘TwitterAutomatedTrading’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) : + there is no package called ‘rjson’ +Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart +Execution halted +ERROR: lazy loading failed for package ‘TwitterAutomatedTrading’ +* removing ‘/tmp/workdir/TwitterAutomatedTrading/old/TwitterAutomatedTrading.Rcheck/TwitterAutomatedTrading’ + + +``` +# updog + +
+ +* Version: 2.1.5 +* GitHub: https://github.com/dcgerard/updog +* Source code: https://github.com/cran/updog +* Date/Publication: 2023-11-29 15:50:02 UTC +* Number of recursive dependencies: 138 + +Run `revdepcheck::cloud_details(, "updog")` for more info + +
+ +## Error before installation + +### Devel + +``` +* using log directory ‘/tmp/workdir/updog/new/updog.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘updog/DESCRIPTION’ ... OK +... +* checking for unstated dependencies in vignettes ... OK +* checking package vignettes in ‘inst/doc’ ... OK +* checking running R code from vignettes ... OK + ‘multidog.Rmd’ using ‘UTF-8’... OK + ‘oracle_calculations.Rmd’ using ‘UTF-8’... OK + ‘simulate_ngs.Rmd’ using ‘UTF-8’... OK + ‘smells_like_updog.Rmd’ using ‘UTF-8’... OK +* checking re-building of vignette outputs ... OK +* DONE +Status: 2 NOTEs + + + + + +``` +### CRAN + +``` +* using log directory ‘/tmp/workdir/updog/old/updog.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘updog/DESCRIPTION’ ... OK +... +* checking for unstated dependencies in vignettes ... OK +* checking package vignettes in ‘inst/doc’ ... OK +* checking running R code from vignettes ... OK + ‘multidog.Rmd’ using ‘UTF-8’... OK + ‘oracle_calculations.Rmd’ using ‘UTF-8’... OK + ‘simulate_ngs.Rmd’ using ‘UTF-8’... OK + ‘smells_like_updog.Rmd’ using ‘UTF-8’... OK +* checking re-building of vignette outputs ... OK +* DONE +Status: 2 NOTEs + + + + + +``` +# valr + +
+ +* Version: 0.8.2 +* GitHub: https://github.com/rnabioco/valr +* Source code: https://github.com/cran/valr +* Date/Publication: 2024-08-30 22:10:03 UTC +* Number of recursive dependencies: 176 + +Run `revdepcheck::cloud_details(, "valr")` for more info + +
+ +## Error before installation + +### Devel + +``` +* using log directory ‘/tmp/workdir/valr/new/valr.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘valr/DESCRIPTION’ ... OK +... +* this is package ‘valr’ version ‘0.8.2’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package required but not available: ‘rtracklayer’ + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +### CRAN + +``` +* using log directory ‘/tmp/workdir/valr/old/valr.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘valr/DESCRIPTION’ ... OK +... +* this is package ‘valr’ version ‘0.8.2’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package required but not available: ‘rtracklayer’ + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + ``` # vdg @@ -11220,6 +14321,82 @@ ERROR: lazy loading failed for package ‘WRTDStidal’ * removing ‘/tmp/workdir/WRTDStidal/old/WRTDStidal.Rcheck/WRTDStidal’ +``` +# xnet + +
+ +* Version: 0.1.11 +* GitHub: https://github.com/CenterForStatistics-UGent/xnet +* Source code: https://github.com/cran/xnet +* Date/Publication: 2020-02-03 19:30:02 UTC +* Number of recursive dependencies: 91 + +Run `revdepcheck::cloud_details(, "xnet")` for more info + +
+ +## Error before installation + +### Devel + +``` +* using log directory ‘/tmp/workdir/xnet/new/xnet.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘xnet/DESCRIPTION’ ... OK +... + Running ‘testthat.R’ +* checking for unstated dependencies in vignettes ... OK +* checking package vignettes in ‘inst/doc’ ... OK +* checking running R code from vignettes ... OK + ‘Preparation_example_data.Rmd’ using ‘UTF-8’... OK + ‘xnet_ClassStructure.Rmd’ using ‘UTF-8’... OK + ‘xnet_ShortIntroduction.Rmd’ using ‘UTF-8’... OK +* checking re-building of vignette outputs ... OK +* DONE +Status: 1 NOTE + + + + + +``` +### CRAN + +``` +* using log directory ‘/tmp/workdir/xnet/old/xnet.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘xnet/DESCRIPTION’ ... OK +... + Running ‘testthat.R’ +* checking for unstated dependencies in vignettes ... OK +* checking package vignettes in ‘inst/doc’ ... OK +* checking running R code from vignettes ... OK + ‘Preparation_example_data.Rmd’ using ‘UTF-8’... OK + ‘xnet_ClassStructure.Rmd’ using ‘UTF-8’... OK + ‘xnet_ShortIntroduction.Rmd’ using ‘UTF-8’... OK +* checking re-building of vignette outputs ... OK +* DONE +Status: 1 NOTE + + + + + ``` # yarrr diff --git a/revdep/problems.md b/revdep/problems.md index a0b6266..387718a 100644 --- a/revdep/problems.md +++ b/revdep/problems.md @@ -44,84 +44,54 @@ Run `revdepcheck::cloud_details(, "babelmixr2")` for more info Package suggested but not available for checking: ‘lixoftConnectors’ ``` -# CGGP +# BeeGUTS
-* Version: 1.0.4 -* GitHub: https://github.com/CollinErickson/CGGP -* Source code: https://github.com/cran/CGGP -* Date/Publication: 2024-01-23 03:22:57 UTC -* Number of recursive dependencies: 77 +* Version: 1.1.3 +* GitHub: https://github.com/bgoussen/BeeGUTS +* Source code: https://github.com/cran/BeeGUTS +* Date/Publication: 2023-09-18 15:40:02 UTC +* Number of recursive dependencies: 86 -Run `revdepcheck::cloud_details(, "CGGP")` for more info +Run `revdepcheck::cloud_details(, "BeeGUTS")` for more info
## Newly broken -* checking tests ... ERROR +* checking re-building of vignette outputs ... NOTE ``` - Running ‘testthat.R’ - Running the tests in ‘tests/testthat.R’ failed. - Complete output: - > library(testthat) - > library(CGGP) - > - > test_check("CGGP") - [ FAIL 1 | WARN 2 | SKIP 0 | PASS 695 ] - - ══ Failed tests ════════════════════════════════════════════════════════════════ - ── Failure ('testcorr.R:543:9'): Logs work for all ───────────────────────────── - `numdC` not equal to corr_C_dC_logs$dCdtheta[, (1 + n2 * i - n2):(n2 * i)]. - 1/30 mismatches - [12] 137283 - 137248 == 34.5 - theta dimension with error is 1 , icor is 10 use_log_scale is TRUE theta is -0.678574629127979 - - [ FAIL 1 | WARN 2 | SKIP 0 | PASS 695 ] - Error: Test failures - Execution halted + Error(s) in re-building vignettes: + ... + --- re-building ‘Tutorial.Rmd’ using rmarkdown + + Quitting from lines 45-58 [example] (Tutorial.Rmd) + Error: processing vignette 'Tutorial.Rmd' failed with diagnostics: + Stan model 'GUTS_SD' does not contain samples. + + --- failed re-building ‘Tutorial.Rmd’ + + SUMMARY: processing the following file failed: + ‘Tutorial.Rmd’ + + Error: Vignette re-building failed. + Execution halted ``` -# circhelp - -
- -* Version: 1.1 -* GitHub: https://github.com/achetverikov/circhelp -* Source code: https://github.com/cran/circhelp -* Date/Publication: 2024-07-04 17:10:02 UTC -* Number of recursive dependencies: 106 - -Run `revdepcheck::cloud_details(, "circhelp")` for more info - -
+## In both -## Newly broken +* checking installed package size ... NOTE + ``` + installed size is 78.9Mb + sub-directories of 1Mb or more: + data 4.0Mb + libs 74.3Mb + ``` -* checking tests ... ERROR +* checking for GNU extensions in Makefiles ... NOTE ``` - Running ‘testthat.R’ - Running the tests in ‘tests/testthat.R’ failed. - Complete output: - > library(testthat) - > library(circhelp) - Loading required package: data.table - Loading required package: ggplot2 - > library(circular) - - Attaching package: 'circular' - ... - [1] "Difference between expected and observed correlation is -0.000000" - [ FAIL 1 | WARN 0 | SKIP 0 | PASS 16 ] - - ══ Failed tests ════════════════════════════════════════════════════════════════ - ── Failure ('test-functions.R:70:3'): conversion from circular SD to kappa works both ways ── - abs(test_sd_deg - vm_kappa_to_circ_sd_deg(kappa_from_deg)) is not strictly less than `tolerance`. Difference: 0.000254 - - [ FAIL 1 | WARN 0 | SKIP 0 | PASS 16 ] - Error: Test failures - Execution halted + GNU make is a SystemRequirements. ``` # coro @@ -165,17 +135,39 @@ Run `revdepcheck::cloud_details(, "coro")` for more info Execution halted ``` -# Haplin +# etwfe
-* Version: 7.3.1 -* GitHub: NA -* Source code: https://github.com/cran/Haplin -* Date/Publication: 2024-02-08 22:20:02 UTC -* Number of recursive dependencies: 66 +* Version: 0.4.0 +* GitHub: https://github.com/grantmcdermott/etwfe +* Source code: https://github.com/cran/etwfe +* Date/Publication: 2024-02-27 04:20:02 UTC +* Number of recursive dependencies: 130 + +Run `revdepcheck::cloud_details(, "etwfe")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... NOTE + ``` + Error(s) in re-building vignettes: + --- re-building ‘etwfe.Rmd’ using rmarkdown + ``` + +# fauxpas + +
-Run `revdepcheck::cloud_details(, "Haplin")` for more info +* Version: 0.5.2 +* GitHub: https://github.com/sckott/fauxpas +* Source code: https://github.com/cran/fauxpas +* Date/Publication: 2023-05-03 08:10:09 UTC +* Number of recursive dependencies: 59 + +Run `revdepcheck::cloud_details(, "fauxpas")` for more info
@@ -183,10 +175,10 @@ Run `revdepcheck::cloud_details(, "Haplin")` for more info * checking installed package size ... NOTE ``` - installed size is 5.4Mb + installed size is 5.1Mb sub-directories of 1Mb or more: - R 1.5Mb - extdata 3.0Mb + R 4.0Mb + doc 1.0Mb ``` # multiverse @@ -279,17 +271,17 @@ Run `revdepcheck::cloud_details(, "OptimModel")` for more info --- re-building ‘OptimModel_vignette.Rmd’ using rmarkdown ``` -# polmineR +# ordinalbayes
-* Version: 0.8.9 -* GitHub: https://github.com/PolMine/polmineR -* Source code: https://github.com/cran/polmineR -* Date/Publication: 2023-10-29 21:50:02 UTC -* Number of recursive dependencies: 97 +* Version: 0.1.1 +* GitHub: https://github.com/kelliejarcher/ordinalbayes +* Source code: https://github.com/cran/ordinalbayes +* Date/Publication: 2022-04-06 15:10:02 UTC +* Number of recursive dependencies: 160 -Run `revdepcheck::cloud_details(, "polmineR")` for more info +Run `revdepcheck::cloud_details(, "ordinalbayes")` for more info
@@ -297,10 +289,17 @@ Run `revdepcheck::cloud_details(, "polmineR")` for more info * checking installed package size ... NOTE ``` - installed size is 5.3Mb + installed size is 12.3Mb sub-directories of 1Mb or more: - R 2.0Mb - extdata 1.9Mb + data 12.0Mb + ``` + +## In both + +* checking dependencies in R code ... NOTE + ``` + Namespace in Imports field not imported from: ‘devtools’ + All declared Imports should be used. ``` # PopED @@ -375,17 +374,58 @@ Run `revdepcheck::cloud_details(, "PopED")` for more info test 1.1Mb ``` -# PubChemR +# posologyr + +
+ +* Version: 1.2.6 +* GitHub: https://github.com/levenc/posologyr +* Source code: https://github.com/cran/posologyr +* Date/Publication: 2024-08-27 16:30:02 UTC +* Number of recursive dependencies: 98 + +Run `revdepcheck::cloud_details(, "posologyr")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... NOTE + ``` + Error(s) in re-building vignettes: + --- re-building ‘a_posteriori_dosing.Rmd’ using rmarkdown + + Quitting from lines 85-87 [estim_map] (a_posteriori_dosing.Rmd) + Error: processing vignette 'a_posteriori_dosing.Rmd' failed with diagnostics: + object of type 'closure' is not subsettable + --- failed re-building ‘a_posteriori_dosing.Rmd’ + + --- re-building ‘a_priori_dosing.Rmd’ using rmarkdown + + ... + object of type 'closure' is not subsettable + --- failed re-building ‘route_of_administration.Rmd’ + + SUMMARY: processing the following files failed: + ‘a_posteriori_dosing.Rmd’ ‘a_priori_dosing.Rmd’ + ‘auc_based_dosing.Rmd’ ‘multiple_endpoints.Rmd’ + ‘route_of_administration.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# rgho
-* Version: 2.0 -* GitHub: https://github.com/selcukorkmaz/PubChemR -* Source code: https://github.com/cran/PubChemR -* Date/Publication: 2024-07-13 06:30:02 UTC -* Number of recursive dependencies: 68 +* Version: 3.0.2 +* GitHub: https://github.com/aphp/rgho +* Source code: https://github.com/cran/rgho +* Date/Publication: 2024-01-19 08:00:02 UTC +* Number of recursive dependencies: 62 -Run `revdepcheck::cloud_details(, "PubChemR")` for more info +Run `revdepcheck::cloud_details(, "rgho")` for more info
@@ -396,79 +436,47 @@ Run `revdepcheck::cloud_details(, "PubChemR")` for more info Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: - > # This file is part of the standard setup for testthat. - > # It is recommended that you do not modify it. - > # - > # Where should you do additional test configuration? - > # Learn more about the roles of various files in: - > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview - > # * https://testthat.r-lib.org/articles/special-files.html + > library(testthat) + > library(rgho) + > + > test_check("rgho") + [ FAIL 2 | WARN 0 | SKIP 2 | PASS 1 ] + + ══ Skipped tests (2) ═══════════════════════════════════════════════════════════ ... - Error in `file(file, "rt")`: cannot open the connection to 'https://pubchem.ncbi.nlm.nih.gov/rest/pug/substance/sid/137349406/xrefs/PatentID/TXT' - Backtrace: - ▆ - 1. └─PubChemR::get_pug_rest(...) at test-get_pug_rest.R:80:3 - 2. └─utils::read.table(response$url) - 3. └─base::file(file, "rt") + ── Failure ('test-get_gho.R:37:5'): Connection errors ────────────────────────── + `get_gho_values(dimension = "COUNTRY")` produced unexpected messages. + Expected match: [45]04 + Actual values: + * Server error: (503) Service Unavailable + - [ FAIL 1 | WARN 1 | SKIP 0 | PASS 202 ] + [ FAIL 2 | WARN 0 | SKIP 2 | PASS 1 ] Error: Test failures Execution halted ``` -* checking running R code from vignettes ... ERROR - ``` - Errors in running code in vignettes: - when running code in ‘Exploring_Chemical_Data_with_PubChemR.Rmd’ - ... - - - > result <- get_pug_rest(identifier = "2697049", namespace = "taxid", - + domain = "taxonomy", operation = "aids", output = "TXT") - Warning in file(file, "rt") : - cannot open URL 'https://pubchem.ncbi.nlm.nih.gov/rest/pug/taxonomy/taxid/2697049/aids/TXT': HTTP status was '503 Service Unavailable' - - When sourcing ‘Exploring_Chemical_Data_with_PubChemR.R’: - Error: cannot open the connection to 'https://pubchem.ncbi.nlm.nih.gov/rest/pug/taxonomy/taxid/2697049/aids/TXT' - Execution halted - - ‘Enhancing_Chemical_Data_Access_with_PubChemR.Rmd’ using ‘UTF-8’... OK - ‘Exploring_Chemical_Data_with_PubChemR.Rmd’ using ‘UTF-8’... failed - ‘Working_with_PubChemR_to_Access_Chemical_Data.Rmd’ using ‘UTF-8’... OK - ``` - -# refer +# rTensor2
-* Version: 0.1.0 +* Version: 2.0.0 * GitHub: NA -* Source code: https://github.com/cran/refer -* Date/Publication: 2021-11-08 12:10:04 UTC -* Number of recursive dependencies: 28 +* Source code: https://github.com/cran/rTensor2 +* Date/Publication: 2024-03-29 16:30:02 UTC +* Number of recursive dependencies: 39 -Run `revdepcheck::cloud_details(, "refer")` for more info +Run `revdepcheck::cloud_details(, "rTensor2")` for more info
## Newly broken -* checking re-building of vignette outputs ... NOTE +* checking installed package size ... NOTE ``` - Error(s) in re-building vignettes: - ... - --- re-building ‘introRef.Rmd’ using rmarkdown - - Quitting from lines 128-132 [unnamed-chunk-16] (introRef.Rmd) - Error: processing vignette 'introRef.Rmd' failed with diagnostics: - promise already under evaluation: recursive default argument reference or earlier problems? - --- failed re-building ‘introRef.Rmd’ - - SUMMARY: processing the following file failed: - ‘introRef.Rmd’ - - Error: Vignette re-building failed. - Execution halted + installed size is 6.4Mb + sub-directories of 1Mb or more: + data 6.0Mb ``` # rxode2 @@ -498,7 +506,7 @@ Run `revdepcheck::cloud_details(, "rxode2")` for more info ``` r library(rxode2) - #> rxode2 2.1.3 using 1 threads (see ?getRxThreads) + #> rxode2 2.1.3 using 2 threads (see ?getRxThreads) ... :1:1: unexpected '<' 1: < @@ -516,10 +524,10 @@ Run `revdepcheck::cloud_details(, "rxode2")` for more info * checking installed package size ... NOTE ``` - installed size is 22.1Mb + installed size is 22.8Mb sub-directories of 1Mb or more: R 1.5Mb - libs 18.8Mb + libs 19.5Mb ``` # spathial @@ -582,7 +590,7 @@ Run `revdepcheck::cloud_details(, "trampoline")` for more info Quitting from lines 43-44 [blow_up] (tampolining.Rmd) Error: processing vignette 'tampolining.Rmd' failed with diagnostics: - C stack usage 9969444 is too close to the limit + C stack usage 9961812 is too close to the limit --- failed re-building ‘tampolining.Rmd’ SUMMARY: processing the following file failed: @@ -607,12 +615,53 @@ Run `revdepcheck::cloud_details(, "trampoline")` for more info > print_numbers(10000) When sourcing ‘tampolining.R’: - Error: C stack usage 9968180 is too close to the limit + Error: C stack usage 9968228 is too close to the limit Execution halted ‘tampolining.Rmd’ using ‘UTF-8’... failed ``` +# treesliceR + +
+ +* Version: 1.0.2 +* GitHub: https://github.com/AraujoMat/treesliceR +* Source code: https://github.com/cran/treesliceR +* Date/Publication: 2024-08-23 18:30:02 UTC +* Number of recursive dependencies: 159 + +Run `revdepcheck::cloud_details(, "treesliceR")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview + > # * https://testthat.r-lib.org/articles/special-files.html + ... + ▆ + 1. ├─base::suppressWarnings(...) at test-CpB.R:31:3 + 2. │ └─base::withCallingHandlers(...) + 3. └─treesliceR::CpB(...) at test-CpB.R:34:5 + 4. └─foreach::foreach(commu = asb, .combine = rbind) %do% ... + 5. └─e$fun(obj, substitute(ex), parent.frame(), e$data) + + [ FAIL 1 | WARN 0 | SKIP 0 | PASS 1743 ] + Error: Test failures + Execution halted + ``` + # WindCurves
@@ -657,7 +706,7 @@ Run `revdepcheck::cloud_details(, "wordpredictor")` for more info ... --- re-building ‘features.Rmd’ using rmarkdown Warning in file("", "w+b") : - cannot open file '/tmp/RtmpsUf68T/Rfe4a3453de72': No such file or directory + cannot open file '/tmp/Rtmph6yuor/Rfcbe17d2b8c': No such file or directory Quitting from lines 92-121 [data-sampling-1] (features.Rmd) Error: processing vignette 'features.Rmd' failed with diagnostics: diff --git a/tests/testthat/test-evaluate.R b/tests/testthat/test-evaluate.R index 80e2e40..7c6969c 100644 --- a/tests/testthat/test-evaluate.R +++ b/tests/testthat/test-evaluate.R @@ -96,24 +96,6 @@ test_that("multiple lines of comments do not lose the terminating \\n", { expect_equal(ev[[1]]$src, "# foo\n") }) -test_that("on.exit is evaluated at end of code", { - ev <- evaluate::evaluate(c( - "on.exit(print('bye'))", - "print('hi')" - )) - expect_output_types(ev, c("source", "source", "text", "text")) -}) - -test_that("return causes an early return", { - ev <- evaluate::evaluate(c( - "1 + 1", - "return()", - "2 + 2" - )) - expect_output_types(ev, c("source", "text", "source")) -}) - - test_that("check_stop_on_error converts integer to enum", { expect_equal(check_stop_on_error(0), "continue") expect_equal(check_stop_on_error(1), "stop")