Releases: quiltdata/nf-quilt
Releases · quiltdata/nf-quilt
Version 0.4.5
116 reduce debug logging (#117) Can also help us identify weird package push "errors"
Version 0.4.4
finalize Changelog for 0.4.4
Version 0.4.3
103 do not create quilt package on failure quilt laronde (#105)
Version 0.4.2
Quiltcore (#98)
Version 0.4.1
v041 patch for Waleed
Version 0.4.0
87 unable to pull packages (#92) - Use `msg` fragment parameter as commit message when writing packages - Removed Benchling support (will add back in a future release) - Don't crash when writing to Quilt+ URIs with `&path=` fragments (by ignoring that part)
Version 0.3.6-debug
Update nextflowVersion to v23.04.1 (#83) [](https://renovatebot.com) This PR contains the following updates: | Package | Change | Age | Adoption | Passing | Confidence | |---|---|---|---|---|---| | [io.nextflow:nf-commons](http://www.nextflow.io) ([source](https://togithub.com/nextflow-io/nextflow)) | `23.04.0` -> `23.04.1` | [](https://docs.renovatebot.com/merge-confidence/) | [](https://docs.renovatebot.com/merge-confidence/) | [](https://docs.renovatebot.com/merge-confidence/) | [](https://docs.renovatebot.com/merge-confidence/) | | [io.nextflow:nextflow](http://www.nextflow.io) ([source](https://togithub.com/nextflow-io/nextflow)) | `23.04.0` -> `23.04.1` | [](https://docs.renovatebot.com/merge-confidence/) | [](https://docs.renovatebot.com/merge-confidence/) | [](https://docs.renovatebot.com/merge-confidence/) | [](https://docs.renovatebot.com/merge-confidence/) | --- ### Release Notes <details> <summary>nextflow-io/nextflow</summary> ### [`v23.04.1`](https://togithub.com/nextflow-io/nextflow/releases/tag/v23.04.1): Version 23.04.1 - Add support for Java 20 \[[`f6933db`](https://togithub.com/nextflow-io/nextflow/commit/f6933db7)] - Fix use of remote dir with local exec statement \[[`6ea1f68`](https://togithub.com/nextflow-io/nextflow/commit/6ea1f68c)] - Fix Azure pool creation when using scaling formula ([#​3868](https://togithub.com/nextflow-io/nextflow/issues/3868)) \[[`84a808a`](https://togithub.com/nextflow-io/nextflow/commit/84a808a5)] - Fix interval channel factory ([#​3848](https://togithub.com/nextflow-io/nextflow/issues/3848)) \[[`82ccf6a`](https://togithub.com/nextflow-io/nextflow/commit/82ccf6ad)] - Fix invalid warning on func import ([#​3807](https://togithub.com/nextflow-io/nextflow/issues/3807)) \[[`4678ffe`](https://togithub.com/nextflow-io/nextflow/commit/4678ffe3)] - Improve plugin test detection \[[`57cfb0d`](https://togithub.com/nextflow-io/nextflow/commit/57cfb0d9)] - Improve plugin updater err handling \[[`5627c69`](https://togithub.com/nextflow-io/nextflow/commit/5627c69a)] - Security fixes \[[`83e8fd6`](https://togithub.com/nextflow-io/nextflow/commit/83e8fd6a)] - Bump [email protected] \[[`d8cb763`](https://togithub.com/nextflow-io/nextflow/commit/d8cb763c)] - Bump [email protected] \[[`b235438`](https://togithub.com/nextflow-io/nextflow/commit/b2354380)] - Bump [email protected] \[[`22a68cf`](https://togithub.com/nextflow-io/nextflow/commit/22a68cfe)] - Bump gson:2.10.1 \[[`83ca1e3`](https://togithub.com/nextflow-io/nextflow/commit/83ca1e32)] - Bump [email protected] \[[`b40b516`](https://togithub.com/nextflow-io/nextflow/commit/b40b5165)] - Bump [email protected] \[[`98a8915`](https://togithub.com/nextflow-io/nextflow/commit/98a89154)] - Bump aws-java-sdk-s3:1.12.429 \[[`b71ee0a`](https://togithub.com/nextflow-io/nextflow/commit/b71ee0a3)] - Bump [email protected] \[[`a5da54d`](https://togithub.com/nextflow-io/nextflow/commit/a5da54d3)] - Bump [email protected] \[[`c90553c`](https://togithub.com/nextflow-io/nextflow/commit/c90553c9)] </details> --- ### Configuration 📅 **Schedule**: Branch creation - At any time (no schedule defined), Automerge - At any time (no schedule defined). 🚦 **Automerge**: Disabled by config. Please merge this manually once you are satisfied. ♻ **Rebasing**: Whenever PR becomes conflicted, or you tick the rebase/retry checkbox. 🔕 **Ignore**: Close this PR and you won't be reminded about these updates again. --- - [ ] <!-- rebase-check -->If you want to rebase/retry this PR, check this box --- This PR has been generated by [Mend Renovate](https://www.mend.io/free-developer-tools/renovate/). View repository job log [here](https://app.renovatebot.com/dashboard#github/quiltdata/nf-quilt). <!--renovate-debug:eyJjcmVhdGVkSW5WZXIiOiIzNS40MC4wIiwidXBkYXRlZEluVmVyIjoiMzUuNzEuNCIsInRhcmdldEJyYW5jaCI6Im1haW4ifQ==--> Co-authored-by: renovate[bot] <29139614+renovate[bot]@users.noreply.github.com>
Version 0.3.5
Plugin-Version: 0.3.5
Version 0.3.4
wrap benchling api (#76) First part of #75
Version 0.3.3
Update dependency gradle to v7.6.1 (#64)
[](https://renovatebot.com)
This PR contains the following updates:
| Package | Update | Change |
|---|---|---|
| [gradle](https://gradle.org)
([source](https://togithub.com/gradle/gradle)) | patch | `7.6` ->
`7.6.1` |
---
### Release Notes
<details>
<summary>gradle/gradle</summary>
### [`v7.6.1`](https://togithub.com/gradle/gradle/releases/tag/v7.6.1):
7.6.1
This is a patch release for 7.6. We recommend using 7.6.1 instead of
7.6.
It fixes the following issues:
- [#​19065](https://togithub.com/gradle/gradle/issues/19065)
Platform dependencies not possible in dependency block of test suite
plugin
- [#​22688](https://togithub.com/gradle/gradle/issues/22688)
Increased memory usage (with -p option)
- [#​22796](https://togithub.com/gradle/gradle/issues/22796)
Building gradle itself fails during toolchain download: permission
denied copying a file within `.gradle/jdks`
- [#​22875](https://togithub.com/gradle/gradle/issues/22875)
Regression with 7.6: @​pom artifact in JVM library project is no
longer found
- [#​22937](https://togithub.com/gradle/gradle/issues/22937)
Remove safe credentials reference
- [#​22973](https://togithub.com/gradle/gradle/issues/22973)
Kotlin MPP plugin broken with Gradle 7.6 due to signature change in
TestResultProcessor
- [#​23016](https://togithub.com/gradle/gradle/issues/23016)
toolchainManagement.jvm.javaRepositories should not expose the full
surface of NamedDomainObjectList
- [#​23025](https://togithub.com/gradle/gradle/issues/23025)
Back-port toolchain related fixes to 7.6.1
- [#​23053](https://togithub.com/gradle/gradle/issues/23053)
Auto-provisioning/auto-detection of IBM Semeru toolchains is broken with
Gradle 7.6
- [#​23074](https://togithub.com/gradle/gradle/issues/23074) Docs:
Build Lifecycle starts halfway through a point
- [#​23096](https://togithub.com/gradle/gradle/issues/23096)
Classifiers of version catalog are discarded while copied to anothor
dependency
- [#​23111](https://togithub.com/gradle/gradle/issues/23111) Ant
closures are broken with Gradle 7.6
- [#​23178](https://togithub.com/gradle/gradle/issues/23178)
Mention the Foojay Toolchain Resolver plugin in the Gradle manual
- [#​23215](https://togithub.com/gradle/gradle/issues/23215)
Gradle 7.6: high memory usage (android project)
- [#​23224](https://togithub.com/gradle/gradle/issues/23224)
Backport to 7.6.1 "Fix for Incremental compilation with modules"
- [#​23294](https://togithub.com/gradle/gradle/issues/23294)
"Unable to make progress running work" together with --continue and
failing tasks (Backport to 7.6.1)
- [#​23555](https://togithub.com/gradle/gradle/issues/23555)
Improve Toolchain related deprecation nagging in 7.6
- [#​23894](https://togithub.com/gradle/gradle/issues/23894)
Update EOL policy
- [#​23910](https://togithub.com/gradle/gradle/issues/23910)
Backport trusting only full GPG keys in dependency verification
\[Backport 7.6.1]
- [#​23941](https://togithub.com/gradle/gradle/issues/23941) Typo
in v7.6 docs about disabling_the_daemon
- [#​23985](https://togithub.com/gradle/gradle/issues/23985)
Resolving of manually created configuration creates a ResolveException
[Read the Release
Notes](https://docs.gradle.org/7.6.1/release-notes.html)
#### Upgrade Instructions
Switch your build to use Gradle 7.6.1 by updating your wrapper:
./gradlew wrapper --gradle-version=7.6.1
See the [Gradle 7.x upgrade
guide](https://docs.gradle.org/7.6.1/userguide/upgrading_version\_7.html#changes\_7.6)
to learn about deprecations, breaking changes and other considerations
when upgrading to Gradle 7.6.1.
#### Reporting Problems
If you find a problem with this release, please file a bug on [GitHub
Issues](https://togithub.com/gradle/gradle/issues) adhering to our issue
guidelines.
If you're not sure you're encountering a bug, please use the
[forum](https://discuss.gradle.org/c/help-discuss).
</details>
---
### Configuration
📅 **Schedule**: Branch creation - At any time (no schedule defined),
Automerge - At any time (no schedule defined).
🚦 **Automerge**: Disabled by config. Please merge this manually once you
are satisfied.
♻ **Rebasing**: Whenever PR becomes conflicted, or you tick the
rebase/retry checkbox.
🔕 **Ignore**: Close this PR and you won't be reminded about this update
again.
---
- [ ] <!-- rebase-check -->If you want to rebase/retry this PR, check
this box
---
This PR has been generated by [Mend
Renovate](https://www.mend.io/free-developer-tools/renovate/). View
repository job log
[here](https://app.renovatebot.com/dashboard#github/quiltdata/nf-quilt).
<!--renovate-debug:eyJjcmVhdGVkSW5WZXIiOiIzNC4xNTIuNCIsInVwZGF0ZWRJblZlciI6IjM0LjE1Mi40In0=-->
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