From 646f056eb8fa8f7b63bf3bc29aaad7402f587bbd Mon Sep 17 00:00:00 2001
From: "Dr. Ernie Prabhakar" <19791+drernie@users.noreply.github.com>
Date: Thu, 5 Dec 2024 16:59:19 -0800
Subject: [PATCH] run fetchngs locally

---
 Makefile | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/Makefile b/Makefile
index 18eb40f5..aab5a542 100644
--- a/Makefile
+++ b/Makefile
@@ -110,7 +110,7 @@ $(PIPELINE): $(NF_BIN) install
 	$(NF_BIN) run nf-core/$(PIPELINE) -profile test,docker -plugins $(PROJECT)@$(VERSION) --outdir "$(PIPE_OUT)"
 
 fetchngs: $(NF_GIT)
-	NXF_VER=$(NXF_VER) $(NF_GIT) run nf-core/fetchngs -profile test,docker --input wf/ids.csv --outdir "s3://$(WRITE_BUCKET)/nf-quilt/fetchngs"
+	NXF_VER=$(NXF_VER) $(NF_BIN) run quiltdata/fetchngs -r master -profile test,docker --input wf/ids.csv --outdir "s3://$(WRITE_BUCKET)/nf-quilt/fetchngs"
 
 nf-git-ver: $(NF_GIT)
 	NXF_VER=$(NXF_VER) $(NF_GIT) -v