From c63946a641915d0c535f41cefbf4b7d809888f52 Mon Sep 17 00:00:00 2001 From: "Dr. Ernie Prabhakar" Date: Mon, 12 Aug 2024 10:37:14 -0700 Subject: [PATCH 01/19] Fix deprecated read_schema in new pyarrow versions https://github.com/dacort/athena-federation-python-sdk/pull/13/files --- setup.cfg | 2 +- src/athena/federation/utils.py | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/setup.cfg b/setup.cfg index b9a83ea..f946b29 100644 --- a/setup.cfg +++ b/setup.cfg @@ -16,7 +16,7 @@ package_dir = packages = find: python_requires = ~=3.8 install_requires = - pyarrow==0.16.0 + pyarrow==10.0.1 smart-open==5.2.1 [options.packages.find] diff --git a/src/athena/federation/utils.py b/src/athena/federation/utils.py index 51c75fa..815122c 100644 --- a/src/athena/federation/utils.py +++ b/src/athena/federation/utils.py @@ -14,7 +14,7 @@ def encode_pyarrow_object(pya_obj): return base64.b64encode(pya_obj.serialize().slice(4)).decode("utf-8") def parse_encoded_schema(b64_schema): - return pa.read_schema(pa.BufferReader(base64.b64decode(b64_schema))) + return pa.ipc.open_stream(pa.BufferReader(base64.b64decode(b64_schema))).schema def encode_pyarrow_records(pya_schema, record_hash): # This is basically the same as pa.record_batch(data, names=['c0', 'c1', 'c2']) From 878646148519cc2c8fc7b40c8bcc10d46bc23ab2 Mon Sep 17 00:00:00 2001 From: "Dr. Ernie Prabhakar" Date: Mon, 12 Aug 2024 10:37:17 -0700 Subject: [PATCH 02/19] Create .flake8 --- .flake8 | 11 +++++++++++ 1 file changed, 11 insertions(+) create mode 100644 .flake8 diff --git a/.flake8 b/.flake8 new file mode 100644 index 0000000..4dc5987 --- /dev/null +++ b/.flake8 @@ -0,0 +1,11 @@ +[flake8] +ignore = E203, E266, W503, BLK100, W291, I004 +max-line-length = 120 +max-complexity = 15 + +[isort] +multi_line_output = 3 +include_trailing_comma = true +force_grid_wrap = 0 +use_parentheses = true +line_length = 120 From 2b307d7564f7f6d6f254f7d04203bbd494fc17c5 Mon Sep 17 00:00:00 2001 From: "Dr. Ernie Prabhakar" 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100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,3 +1,25 @@ +[tool.poetry] +name = "athena-federation-python-sdk" +version = "0.1.0" +description = "Unofficial Python SDK for Athena Federation" +authors = ["Damon P. Cortesi ", "Ernest Prabhakar "] +license = "APACHE" +readme = "README.md" +homepage = "https://github.com/quiltdata/athena-federation-python-sdk" +repository = "https://github.com/quiltdata/athena-federation-python-sdk" +documentation = "https://github.com/quiltdata/athena-federation-python-sdk" + +[tool.poetry.dependencies] +python = "~3.12" +pyarrow = "17.0.0" +smart-open = "7.0.4" + +[tool.poetry.dev-dependencies] +pytest = "^6.2" +pytest-cov = "^2.11" +black = "^20.8b1" +flake8 = "^3.8" + [build-system] -requires = ["setuptools", "wheel"] -build-backend = "setuptools.build_meta" +requires = ["poetry-core>=1.0.0"] +build-backend = "poetry.core.masonry.api" diff --git a/requirements.txt b/requirements.txt deleted file mode 100644 index 3e2c67c..0000000 --- a/requirements.txt +++ /dev/null @@ -1,5 +0,0 @@ -# requirements.txt -# -# installs dependencies from ./setup.py, and the package itself, -# in editable mode --e . \ No newline at end of file diff --git a/setup.cfg b/setup.cfg deleted file mode 100644 index f946b29..0000000 --- a/setup.cfg +++ /dev/null @@ -1,23 +0,0 @@ -[metadata] -name = unoffical-athena-federation-sdk -version = attr: athena.federation.__version__ -description = Unofficial Python SDK for Athena Federation -long_description = file: README.md -long_description_content_type = text/markdown -url = https://github.com/dacort/athena-federation-python-sdk -project_urls = - Bug Tracker = https://github.com/dacort/athena-federation-python-sdk/issues -classifiers = - Programming Language :: Python :: 3 - -[options] -package_dir = - = src -packages = find: -python_requires = ~=3.8 -install_requires = - pyarrow==10.0.1 - smart-open==5.2.1 - -[options.packages.find] -where = src \ No newline at end of file From 12983e75711471d7f25deb4b8c92b5acc368d42c Mon Sep 17 00:00:00 2001 From: "Dr. Ernie Prabhakar" Date: Mon, 12 Aug 2024 11:00:28 -0700 Subject: [PATCH 04/19] rename project folder --- {src => athena_federation_python_sdk}/athena/__init__.py | 0 .../athena/federation/__init__.py | 0 .../athena/federation/athena_data_source.py | 0 .../athena/federation/batch_writer.py | 0 .../athena/federation/lambda_handler.py | 0 {src => athena_federation_python_sdk}/athena/federation/models.py | 0 {src => athena_federation_python_sdk}/athena/federation/sdk.py | 0 {src => athena_federation_python_sdk}/athena/federation/utils.py | 0 8 files changed, 0 insertions(+), 0 deletions(-) rename {src => athena_federation_python_sdk}/athena/__init__.py (100%) rename {src => athena_federation_python_sdk}/athena/federation/__init__.py (100%) rename {src => athena_federation_python_sdk}/athena/federation/athena_data_source.py (100%) rename {src => athena_federation_python_sdk}/athena/federation/batch_writer.py (100%) rename {src => athena_federation_python_sdk}/athena/federation/lambda_handler.py (100%) rename {src => athena_federation_python_sdk}/athena/federation/models.py (100%) rename {src => athena_federation_python_sdk}/athena/federation/sdk.py (100%) rename {src => athena_federation_python_sdk}/athena/federation/utils.py (100%) diff --git a/src/athena/__init__.py b/athena_federation_python_sdk/athena/__init__.py similarity index 100% rename from src/athena/__init__.py rename to athena_federation_python_sdk/athena/__init__.py diff --git a/src/athena/federation/__init__.py b/athena_federation_python_sdk/athena/federation/__init__.py similarity index 100% rename from src/athena/federation/__init__.py rename to athena_federation_python_sdk/athena/federation/__init__.py diff --git a/src/athena/federation/athena_data_source.py b/athena_federation_python_sdk/athena/federation/athena_data_source.py similarity index 100% rename from src/athena/federation/athena_data_source.py rename to athena_federation_python_sdk/athena/federation/athena_data_source.py diff --git a/src/athena/federation/batch_writer.py b/athena_federation_python_sdk/athena/federation/batch_writer.py similarity index 100% rename from src/athena/federation/batch_writer.py rename to athena_federation_python_sdk/athena/federation/batch_writer.py diff --git a/src/athena/federation/lambda_handler.py b/athena_federation_python_sdk/athena/federation/lambda_handler.py similarity index 100% rename from src/athena/federation/lambda_handler.py rename to athena_federation_python_sdk/athena/federation/lambda_handler.py diff --git a/src/athena/federation/models.py b/athena_federation_python_sdk/athena/federation/models.py similarity index 100% rename from src/athena/federation/models.py rename to athena_federation_python_sdk/athena/federation/models.py diff --git a/src/athena/federation/sdk.py b/athena_federation_python_sdk/athena/federation/sdk.py similarity index 100% rename from src/athena/federation/sdk.py rename to athena_federation_python_sdk/athena/federation/sdk.py diff --git a/src/athena/federation/utils.py b/athena_federation_python_sdk/athena/federation/utils.py similarity index 100% rename from src/athena/federation/utils.py rename to athena_federation_python_sdk/athena/federation/utils.py From 4e948bac2dc29eb4d5b7030ff27eb811aa991295 Mon Sep 17 00:00:00 2001 From: "Dr. Ernie Prabhakar" Date: Mon, 12 Aug 2024 11:05:55 -0700 Subject: [PATCH 05/19] Python CI --- .github/workflows/mega-linter.yml | 56 +++++++++++++++++++++++++ .github/workflows/python-package.yml | 63 ++++++++++++++++++++++++++++ 2 files changed, 119 insertions(+) create mode 100644 .github/workflows/mega-linter.yml create mode 100644 .github/workflows/python-package.yml diff --git a/.github/workflows/mega-linter.yml b/.github/workflows/mega-linter.yml new file mode 100644 index 0000000..99982e0 --- /dev/null +++ b/.github/workflows/mega-linter.yml @@ -0,0 +1,56 @@ +--- +# MegaLinter GitHub Action configuration file +# More info at https://megalinter.github.io +name: MegaLinter +on: # yamllint disable-line rule:truthy + push: # Comment this line to trigger action only on pull-requests (not recommended if you don't pay for GH Actions) +permissions: read-all +env: # Comment env block if you do not want to apply fixes + APPLY_FIXES: all # When active, APPLY_FIXES must also be defined as environment variable (in github/workflows/mega-linter.yml or other CI tool) + DISABLE_LINTERS: SPELL_CSPELL,COPYPASTE_JSCPD,PYTHON_BANDIT,PYTHON_PYRIGHT,PYTHON_PYLINT,REPOSITORY_GRYPE,REPOSITORY_SECRETLINT,REPOSITORY_TRIVY,REPOSITORY_TRUFFLEHOG + MARKDOWN_MARKDOWNLINT_FILTER_REGEX_EXCLUDE: "tests/example.*ME\\.md" # Exclude example markdown files from markdownlint +concurrency: + group: ${{ github.ref }}-${{ github.workflow }} + cancel-in-progress: true + +jobs: + build: + name: MegaLinter + runs-on: ubuntu-latest + permissions: + contents: read + id-token: write + issues: write + pull-requests: write + steps: + # Git Checkout + - name: Checkout Code + uses: actions/checkout@v4 + with: + token: ${{ secrets.GITHUB_TOKEN }} + fetch-depth: 0 # If you use VALIDATE_ALL_CODEBASE = true, you can remove this line to improve performances + + # MegaLinter + - name: MegaLinter + id: ml + # You can override MegaLinter flavor used to have faster performances + # More info at https://megalinter.github.io/flavors/ + uses: oxsecurity/megalinter/flavors/python@v7.7.0 + env: + # All available variables are described in documentation + # https://megalinter.github.io/configuration/ + VALIDATE_ALL_CODEBASE: true + # VALIDATE_ALL_CODEBASE: ${{ github.event_name == 'push' && github.ref == 'refs/heads/main' }} # Validates all source when push on main, else just the git diff with main. Override with true if you always want to lint all sources + GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} + # ADD YOUR CUSTOM ENV VARIABLES HERE OR DEFINE THEM IN A FILE .mega-linter.yml AT THE ROOT OF YOUR REPOSITORY + DISABLE: COPYPASTE,SPELL # Uncomment to disable copy-paste and spell checks + + # Upload MegaLinter artifacts + - name: Archive production artifacts + uses: actions/upload-artifact@v4 + if: true + with: + name: MegaLinter reports + path: | + megalinter-reports + mega-linter.log diff --git a/.github/workflows/python-package.yml b/.github/workflows/python-package.yml new file mode 100644 index 0000000..cf70605 --- /dev/null +++ b/.github/workflows/python-package.yml @@ -0,0 +1,63 @@ +--- +# This workflow will install Python dependencies, run tests and lint with a variety of Python versions +# For more information see: https://docs.github.com/en/actions/automating-builds-and-tests/building-and-testing-python +name: Python package +on: # yamllint disable-line rule:truthy + push: + branches: [ "main" ] + pull_request: + branches: [ "main" ] +permissions: read-all + +jobs: + build: + permissions: + contents: read + id-token: write + issues: write + pull-requests: write + strategy: + fail-fast: false + matrix: + python-version: ["3.10"] # "3.11" + poetry-version: ["1.3.1"] + os: [ubuntu-latest, macos-latest] # , windows-latest + runs-on: ${{ matrix.os }} + + steps: + - uses: actions/checkout@v4 + - name: Set up Python ${{ matrix.python-version }} + uses: actions/setup-python@v5 + with: + python-version: ${{ matrix.python-version }} + - name: Run poetry image + uses: abatilo/actions-poetry@v2 + with: + poetry-version: ${{ matrix.poetry-version }} + - name: Install dependencies + run: | + poetry --version + poetry install + - name: Lint with flake8 + run: | + # stop the build if there are Python syntax errors or undefined names + poetry run flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics + # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide + poetry run flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics + - name: Configure AWS Credentials + uses: aws-actions/configure-aws-credentials@v4 + with: + role-to-assume: arn:aws:iam::712023778557:role/github/GitHub-Testing-Federation + aws-region: us-east-1 + - name: Test with pytest + run: | + make test TEST_OS=${{ matrix.os }} + - name: Get Coverage Report + uses: orgoro/coverage@v3.1 + with: + coverageFile: coverage.xml + token: ${{ secrets.GITHUB_TOKEN }} + thresholdAll: 0.8 + thresholdNew: 0.8 + thresholdModified: 0.8 + if: github.event_name == 'pull_request' \ No newline at end of file From 96cc4e6326c9b76478827dfa0e72b97215984971 Mon Sep 17 00:00:00 2001 From: "Dr. Ernie Prabhakar" Date: Mon, 12 Aug 2024 11:08:55 -0700 Subject: [PATCH 06/19] lint --- .../athena/federation/__init__.py | 2 +- .../athena/federation/athena_data_source.py | 16 +++--- .../athena/federation/batch_writer.py | 2 +- .../athena/federation/lambda_handler.py | 6 +-- .../athena/federation/models.py | 54 ++++++++++--------- .../athena/federation/sdk.py | 4 +- example/handler.py | 8 +-- example/sample_data_source.py | 33 ++++++------ 8 files changed, 64 insertions(+), 61 deletions(-) diff --git a/athena_federation_python_sdk/athena/federation/__init__.py b/athena_federation_python_sdk/athena/federation/__init__.py index 1dbfb98..86194c9 100644 --- a/athena_federation_python_sdk/athena/federation/__init__.py +++ b/athena_federation_python_sdk/athena/federation/__init__.py @@ -1,3 +1,3 @@ """Version number of our project""" -__version__ = '0.0.3' \ No newline at end of file +__version__ = "0.0.3" diff --git a/athena_federation_python_sdk/athena/federation/athena_data_source.py b/athena_federation_python_sdk/athena/federation/athena_data_source.py index 58c0a02..b59f5c6 100644 --- a/athena_federation_python_sdk/athena/federation/athena_data_source.py +++ b/athena_federation_python_sdk/athena/federation/athena_data_source.py @@ -1,8 +1,9 @@ from abc import ABC, abstractmethod -from typing import Any, Dict, List, Mapping, Union, Generator +from typing import Any, Dict, Generator, List, Mapping, Union import pyarrow as pa + class AthenaDataSource(ABC): """ AthenaDataCatalog is a class that makes it easy to build a custom data connector for Athena using Python. @@ -11,6 +12,7 @@ class AthenaDataSource(ABC): Once defined, it is then passed to `AthenaLambdaHandler`. That class handles the majority of encoding your responses in the format necessary for the Athena SDK. """ + def __init__(self) -> None: self._data_source_type = "athena_python_sdk" @@ -18,7 +20,7 @@ def __init__(self) -> None: def data_source_type(self): """Get the data source type. Only used for PingRequest and debugging.""" return self._data_source_type - + @abstractmethod def databases(self) -> List[str]: """ @@ -46,7 +48,7 @@ def columns(self, database_name: str, table_name: str) -> List[str]: If you want to be more specific, override the `table_schema` method instead. """ return [] - + @abstractmethod def schema(self, database_name: str, table_name: str) -> pa.Schema: """ @@ -58,7 +60,7 @@ def schema(self, database_name: str, table_name: str) -> pa.Schema: return pa.schema( [(col, pa.string()) for col in self.columns(database_name, table_name)] ) - + def splits(self, database_name: str, table_name: str) -> List[Dict]: """ Return a list of splits for the given table. @@ -71,9 +73,11 @@ def splits(self, database_name: str, table_name: str) -> List[Dict]: you can use the default implementation, which generates a single split. """ return [] - + @abstractmethod - def records(self, database_name: str, table_name: str, split: Mapping[str,str]) -> Union[Dict[str,List[Any]], Generator[Dict[str,List[Any]],None,None]]: + def records( + self, database_name: str, table_name: str, split: Mapping[str, str] + ) -> Union[Dict[str, List[Any]], Generator[Dict[str, List[Any]], None, None]]: """ Return a dictionary of records for the given table and split. diff --git a/athena_federation_python_sdk/athena/federation/batch_writer.py b/athena_federation_python_sdk/athena/federation/batch_writer.py index 4093a5c..bb22cc5 100644 --- a/athena_federation_python_sdk/athena/federation/batch_writer.py +++ b/athena_federation_python_sdk/athena/federation/batch_writer.py @@ -57,4 +57,4 @@ def all_records(self): record_batches = [b for b in reader] one_chunk_table = pa.Table.from_batches(record_batches).combine_chunks() batches = one_chunk_table.to_batches(max_chunksize=None) - return batches[0] \ No newline at end of file + return batches[0] diff --git a/athena_federation_python_sdk/athena/federation/lambda_handler.py b/athena_federation_python_sdk/athena/federation/lambda_handler.py index b3d3519..013ca0b 100644 --- a/athena_federation_python_sdk/athena/federation/lambda_handler.py +++ b/athena_federation_python_sdk/athena/federation/lambda_handler.py @@ -1,8 +1,8 @@ +import athena.federation.models as models +from athena.federation.athena_data_source import AthenaDataSource from athena.federation.batch_writer import BatchWriter from athena.federation.sdk import AthenaFederationSDK -from athena.federation.athena_data_source import AthenaDataSource from athena.federation.utils import AthenaSDKUtils -import athena.federation.models as models class AthenaLambdaHandler(AthenaFederationSDK): @@ -130,4 +130,4 @@ def ReadRecordsRequest(self) -> models.ReadRecordsResponse: pa_records = AthenaSDKUtils.encode_pyarrow_records( schema, writer.all_records().to_pydict() ) - return models.ReadRecordsResponse(self.catalog_name, schema, pa_records) \ No newline at end of file + return models.ReadRecordsResponse(self.catalog_name, schema, pa_records) diff --git a/athena_federation_python_sdk/athena/federation/models.py b/athena_federation_python_sdk/athena/federation/models.py index c2a6e7f..6a2e05f 100644 --- a/athena_federation_python_sdk/athena/federation/models.py +++ b/athena_federation_python_sdk/athena/federation/models.py @@ -1,8 +1,7 @@ from uuid import uuid4 -from athena.federation.utils import AthenaSDKUtils - import pyarrow as pa +from athena.federation.utils import AthenaSDKUtils # https://github.com/awslabs/aws-athena-query-federation/blob/master/athena-federation-sdk/src/main/java/com/amazonaws/athena/connector/lambda/handlers/FederationCapabilities.java#L33 CAPABILITIES = 23 @@ -17,15 +16,15 @@ def __init__(self, catalogName, queryId, sourceType) -> None: def as_dict(self): return { "@type": "PingResponse", - "catalogName": self.catalogName, + "catalogName": self.catalogName, "queryId": self.queryId, "sourceType": self.sourceType, - "capabilities": CAPABILITIES + "capabilities": CAPABILITIES, } class ListSchemasResponse: - requestType = 'LIST_SCHEMAS' + requestType = "LIST_SCHEMAS" def __init__(self, catalogName, schemas) -> None: self.catalogName = catalogName @@ -33,10 +32,10 @@ def __init__(self, catalogName, schemas) -> None: def as_dict(self): return { - "@type": 'ListSchemasResponse', + "@type": "ListSchemasResponse", "catalogName": self.catalogName, "schemas": self.schemas, - "requestType": self.requestType + "requestType": self.requestType, } @@ -50,7 +49,7 @@ def as_dict(self): class ListTablesResponse: - requestType = 'LIST_TABLES' + requestType = "LIST_TABLES" def __init__(self, catalogName, tableDefinitions=None) -> None: self.catalogName = catalogName @@ -64,15 +63,17 @@ def as_dict(self): "@type": "ListTablesResponse", "catalogName": self.catalogName, "tables": [t.as_dict() for t in self.tables], - "requestType": self.requestType + "requestType": self.requestType, } # Missing nextToken - listtables can be paginated class GetTableResponse: - request_type = 'GET_TABLE' + request_type = "GET_TABLE" - def __init__(self, catalogName, databaseName, tableName, schema, partitionColumns=None) -> None: + def __init__( + self, catalogName, databaseName, tableName, schema, partitionColumns=None + ) -> None: self.catalogName = catalogName self.databaseName = databaseName self.tableName = tableName @@ -83,15 +84,15 @@ def as_dict(self): return { "@type": "GetTableResponse", "catalogName": self.catalogName, - "tableName": {'schemaName': self.databaseName, 'tableName': self.tableName}, + "tableName": {"schemaName": self.databaseName, "tableName": self.tableName}, "schema": {"schema": AthenaSDKUtils.encode_pyarrow_object(self.schema)}, "partitionColumns": self.partitions, - "requestType": self.request_type + "requestType": self.request_type, } class GetTableLayoutResponse: - request_type = 'GET_TABLE_LAYOUT' + request_type = "GET_TABLE_LAYOUT" def __init__(self, catalogName, databaseName, tableName, partitions=None) -> None: self.catalogName = catalogName @@ -109,14 +110,14 @@ def encoded_partition_config(self): return { "aId": str(uuid4()), "schema": AthenaSDKUtils.encode_pyarrow_object(batch.schema), - "records": AthenaSDKUtils.encode_pyarrow_object(batch) + "records": AthenaSDKUtils.encode_pyarrow_object(batch), } def as_dict(self): # If _no_ partition_config is provided, we *must* return at least 1 partition # otherwise Athena will not know to retrieve data. if self.partitions is None: - self.partitions = {'partitionId': [1]} + self.partitions = {"partitionId": [1]} # self.partitions = { # 'schema': pa.schema([('partitionId', pa.int32())]), # 'records': { @@ -127,14 +128,14 @@ def as_dict(self): return { "@type": "GetTableLayoutResponse", "catalogName": self.catalogName, - "tableName": {'schemaName': self.databaseName, 'tableName': self.tableName}, + "tableName": {"schemaName": self.databaseName, "tableName": self.tableName}, "partitions": self.encoded_partition_config(), - "requestType": self.request_type + "requestType": self.request_type, } class GetSplitsResponse: - request_type = 'GET_SPLITS' + request_type = "GET_SPLITS" def __init__(self, catalogName, splits) -> None: self.catalogName = catalogName @@ -146,12 +147,12 @@ def as_dict(self): "catalogName": self.catalogName, "splits": self.splits, "continuationToken": None, - "requestType": self.request_type + "requestType": self.request_type, } class ReadRecordsResponse: - request_type = 'READ_RECORDS' + request_type = "READ_RECORDS" def __init__(self, catalogName, schema, records) -> None: self.catalogName = catalogName @@ -165,13 +166,14 @@ def as_dict(self): "records": { "aId": str(uuid4()), "schema": AthenaSDKUtils.encode_pyarrow_object(self.schema), - "records": AthenaSDKUtils.encode_pyarrow_object(self.records) + "records": AthenaSDKUtils.encode_pyarrow_object(self.records), }, - "requestType": self.request_type + "requestType": self.request_type, } + class RemoteReadRecordsResponse: - request_type = 'READ_RECORDS' + request_type = "READ_RECORDS" def __init__(self, catalogName, schema, remoteBlocks, encryptionKey) -> None: self.catalogName = catalogName @@ -185,5 +187,5 @@ def as_dict(self): "catalogName": self.catalogName, "schema": {"schema": AthenaSDKUtils.encode_pyarrow_object(self.schema)}, "remoteBlocks": [self.remoteBlocks], - "encryptionKey": None - } \ No newline at end of file + "encryptionKey": None, + } diff --git a/athena_federation_python_sdk/athena/federation/sdk.py b/athena_federation_python_sdk/athena/federation/sdk.py index 4413ad0..1fc7568 100644 --- a/athena_federation_python_sdk/athena/federation/sdk.py +++ b/athena_federation_python_sdk/athena/federation/sdk.py @@ -22,7 +22,7 @@ def __init__(self) -> None: @abstractmethod def PingRequest(self) -> models.PingResponse: """ - Return metadata about the data connector. + Return metadata about the data connector. This is used by Athena to verify the Lambda function is accessible. """ @@ -56,4 +56,4 @@ def GetSplitsRequest(self) -> models.GetSplitsResponse: @abstractmethod def ReadRecordsRequest(self) -> models.ReadRecordsResponse: """The actual data!""" - raise NotImplementedError \ No newline at end of file + raise NotImplementedError diff --git a/example/handler.py b/example/handler.py index 73467d8..4622492 100644 --- a/example/handler.py +++ b/example/handler.py @@ -1,17 +1,17 @@ -import os import json +import os from athena.federation.lambda_handler import AthenaLambdaHandler from sample_data_source import SampleDataSource # This needs to be a valid bucket that the Lambda function role has access to -spill_bucket = os.environ['TARGET_BUCKET'] +spill_bucket = os.environ["TARGET_BUCKET"] example_handler = AthenaLambdaHandler( - data_source=SampleDataSource(), - spill_bucket=spill_bucket + data_source=SampleDataSource(), spill_bucket=spill_bucket ) + def lambda_handler(event, context): # For debugging purposes, we print both the event and the response :) print(json.dumps(event)) diff --git a/example/sample_data_source.py b/example/sample_data_source.py index dd9fc20..02212c8 100644 --- a/example/sample_data_source.py +++ b/example/sample_data_source.py @@ -1,8 +1,8 @@ -from athena.federation.athena_data_source import AthenaDataSource +from typing import Any, Dict, List, Mapping import pyarrow as pa +from athena.federation.athena_data_source import AthenaDataSource -from typing import Mapping, Dict, List, Any class SampleDataSource(AthenaDataSource): """ @@ -10,34 +10,31 @@ class SampleDataSource(AthenaDataSource): A hard-coded example that shows the different methods you can implement. """ + def __init__(self): super().__init__() - + def databases(self) -> List[str]: return ["sampledb"] - + def tables(self, database_name: str) -> List[str]: return ["demo"] - + def columns(self, database_name: str, table_name: str) -> List[str]: return ["id", "name"] - + def schema(self, database_name: str, table_name: str) -> pa.Schema: return super().schema(database_name, table_name) - + def splits(self, database_name: str, table_name: str) -> List[Dict]: return [ - { - "name": "split1", - "action": "normal" - }, - { - "name": "split2", - "action": "spill" - } + {"name": "split1", "action": "normal"}, + {"name": "split2", "action": "spill"}, ] - def records(self, database: str, table: str, split: Mapping[str,str]) -> Dict[str,List[Any]]: + def records( + self, database: str, table: str, split: Mapping[str, str] + ) -> Dict[str, List[Any]]: """ Generate example records """ @@ -48,7 +45,7 @@ def records(self, database: str, table: str, split: Mapping[str,str]) -> Dict[st [4, "Janice"], ] # Demonstrate how splits work by generating a huge response. :) - if split.get('action', "") == "spill": + if split.get("action", "") == "spill": records = records * 4000 # We unfortunately need to transpose the data - we should add a helper for this - return dict(zip(self.columns(database, table), list(zip(*records)))) \ No newline at end of file + return dict(zip(self.columns(database, table), list(zip(*records)))) From cde813a307036fa8e7656cb3e84c7bc041aa5d63 Mon Sep 17 00:00:00 2001 From: "Dr. Ernie Prabhakar" Date: Mon, 12 Aug 2024 11:10:42 -0700 Subject: [PATCH 07/19] remove subfolders --- athena_federation_python_sdk/.DS_Store | Bin 0 -> 6148 bytes .../{athena/federation => }/__init__.py | 0 athena_federation_python_sdk/athena/__init__.py | 0 .../federation => }/athena_data_source.py | 0 .../{athena/federation => }/batch_writer.py | 2 +- .../{athena/federation => }/lambda_handler.py | 0 .../{athena/federation => }/models.py | 0 .../{athena/federation => }/sdk.py | 0 .../{athena/federation => }/utils.py | 0 9 files changed, 1 insertion(+), 1 deletion(-) create mode 100644 athena_federation_python_sdk/.DS_Store rename athena_federation_python_sdk/{athena/federation => }/__init__.py (100%) delete mode 100644 athena_federation_python_sdk/athena/__init__.py rename athena_federation_python_sdk/{athena/federation => }/athena_data_source.py (100%) rename athena_federation_python_sdk/{athena/federation => }/batch_writer.py (98%) rename athena_federation_python_sdk/{athena/federation => }/lambda_handler.py (100%) rename athena_federation_python_sdk/{athena/federation => }/models.py (100%) rename athena_federation_python_sdk/{athena/federation => }/sdk.py (100%) rename athena_federation_python_sdk/{athena/federation => }/utils.py (100%) diff --git a/athena_federation_python_sdk/.DS_Store b/athena_federation_python_sdk/.DS_Store new file mode 100644 index 0000000000000000000000000000000000000000..5008ddfcf53c02e82d7eee2e57c38e5672ef89f6 GIT binary patch literal 6148 zcmeH~Jr2S!425mzP>H1@V-^m;4Wg<&0T*E43hX&L&p$$qDprKhvt+--jT7}7np#A3 zem<@ulZcFPQ@L2!n>{z**++&mCkOWA81W14cNZlEfg7;MkzE(HCqgga^y>{tEnwC%0;vJ&^%eQ zLs35+`xjp>T0 Date: Mon, 12 Aug 2024 11:12:03 -0700 Subject: [PATCH 08/19] bump CI versions --- .github/workflows/python-package.yml | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/.github/workflows/python-package.yml b/.github/workflows/python-package.yml index cf70605..39221e8 100644 --- a/.github/workflows/python-package.yml +++ b/.github/workflows/python-package.yml @@ -19,8 +19,8 @@ jobs: strategy: fail-fast: false matrix: - python-version: ["3.10"] # "3.11" - poetry-version: ["1.3.1"] + python-version: ["3.12"] + poetry-version: ["1.8.3"] os: [ubuntu-latest, macos-latest] # , windows-latest runs-on: ${{ matrix.os }} From 37682dec650ddbba49911344ebbbe3a054e371e3 Mon Sep 17 00:00:00 2001 From: "Dr. Ernie Prabhakar" Date: Mon, 12 Aug 2024 12:27:37 -0700 Subject: [PATCH 09/19] simplify package name --- .gitignore | 1 + Dockerfile | 10 +++++----- README.md | 4 ++-- .../__init__.py | 0 .../athena_data_source.py | 0 .../batch_writer.py | 0 .../example}/handler.py | 2 +- .../example}/sample_data_source.py | 2 +- .../lambda_handler.py | 10 +++++----- .../models.py | 2 +- .../sdk.py | 2 +- .../utils.py | 0 athena_federation_python_sdk/.DS_Store | Bin 6148 -> 0 bytes pyproject.toml | 2 +- 14 files changed, 18 insertions(+), 17 deletions(-) rename {athena_federation_python_sdk => athena_federation}/__init__.py (100%) rename {athena_federation_python_sdk => athena_federation}/athena_data_source.py (100%) rename {athena_federation_python_sdk => athena_federation}/batch_writer.py (100%) rename {example => athena_federation/example}/handler.py (89%) rename {example => athena_federation/example}/sample_data_source.py (95%) rename {athena_federation_python_sdk => athena_federation}/lambda_handler.py (95%) rename {athena_federation_python_sdk => athena_federation}/models.py (99%) rename {athena_federation_python_sdk => athena_federation}/sdk.py (97%) rename {athena_federation_python_sdk => athena_federation}/utils.py (100%) delete mode 100644 athena_federation_python_sdk/.DS_Store diff --git a/.gitignore b/.gitignore index ac2ab47..a21ff37 100644 --- a/.gitignore +++ b/.gitignore @@ -8,3 +8,4 @@ dist/ # Environment info .env +athena_federation/.DS_Store diff --git a/Dockerfile b/Dockerfile index 9d70543..a1eac02 100644 --- a/Dockerfile +++ b/Dockerfile @@ -4,15 +4,15 @@ FROM python:3.8-slim AS build WORKDIR /app # Get ready to build -RUN pip install build +RUN pip install poetry # Now copy the app over and build a wheel -COPY src /app/src -COPY pyproject.toml setup.cfg /app/ -RUN python -m build +COPY src /app/src/ +COPY pyproject.toml /app/ +RUN poetry install ## Now use the compiled wheel in our lambda function -FROM amazon/aws-lambda-python:3.8.2021.12.09.15 AS lambda +FROM amazon/aws-lambda-python:3.12.0 AS lambda ENV TARGET_BUCKET=replace_me diff --git a/README.md b/README.md index 62b8dff..64a0bf8 100644 --- a/README.md +++ b/README.md @@ -15,6 +15,7 @@ You can see an example implementation that [queries Google Sheets using Athena]( - Partitions are not supported, so Athena will not parallelize the query using partitions. ## Example Implementations + - [Athena data source connector for Minio](https://github.com/Proximie/athena-connector-for-minio/) ## Local Development @@ -144,7 +145,6 @@ aws iam attach-role-policy \ --policy-arn arn:aws:iam::${AWS_ACCOUNT_ID}:policy/athena-example-s3-access ``` - 6. Now create your function pointing to the created repository image ```shell @@ -158,7 +158,7 @@ aws lambda create-function \ --package-type Image ``` -## Connect with Athena! +## Connect with Athena 1. Choose "Data sources" on the top navigation bar in the Athena console and then click "Connect data source" diff --git a/athena_federation_python_sdk/__init__.py b/athena_federation/__init__.py similarity index 100% rename from athena_federation_python_sdk/__init__.py rename to athena_federation/__init__.py diff --git a/athena_federation_python_sdk/athena_data_source.py b/athena_federation/athena_data_source.py similarity index 100% rename from athena_federation_python_sdk/athena_data_source.py rename to athena_federation/athena_data_source.py diff --git a/athena_federation_python_sdk/batch_writer.py b/athena_federation/batch_writer.py similarity index 100% rename from athena_federation_python_sdk/batch_writer.py rename to athena_federation/batch_writer.py diff --git a/example/handler.py b/athena_federation/example/handler.py similarity index 89% rename from example/handler.py rename to athena_federation/example/handler.py index 4622492..a36276f 100644 --- a/example/handler.py +++ b/athena_federation/example/handler.py @@ -1,7 +1,7 @@ import json import os -from athena.federation.lambda_handler import AthenaLambdaHandler +from athena_federation.lambda_handler import AthenaLambdaHandler from sample_data_source import SampleDataSource # This needs to be a valid bucket that the Lambda function role has access to diff --git a/example/sample_data_source.py b/athena_federation/example/sample_data_source.py similarity index 95% rename from example/sample_data_source.py rename to athena_federation/example/sample_data_source.py index 02212c8..ae1e684 100644 --- a/example/sample_data_source.py +++ b/athena_federation/example/sample_data_source.py @@ -1,7 +1,7 @@ from typing import Any, Dict, List, Mapping import pyarrow as pa -from athena.federation.athena_data_source import AthenaDataSource +from athena_federation.athena_data_source import AthenaDataSource class SampleDataSource(AthenaDataSource): diff --git a/athena_federation_python_sdk/lambda_handler.py b/athena_federation/lambda_handler.py similarity index 95% rename from athena_federation_python_sdk/lambda_handler.py rename to athena_federation/lambda_handler.py index 013ca0b..3029bef 100644 --- a/athena_federation_python_sdk/lambda_handler.py +++ b/athena_federation/lambda_handler.py @@ -1,8 +1,8 @@ -import athena.federation.models as models -from athena.federation.athena_data_source import AthenaDataSource -from athena.federation.batch_writer import BatchWriter -from athena.federation.sdk import AthenaFederationSDK -from athena.federation.utils import AthenaSDKUtils +import athena_federation.models as models +from athena_federation.athena_data_source import AthenaDataSource +from athena_federation.batch_writer import BatchWriter +from athena_federation.sdk import AthenaFederationSDK +from athena_federation.utils import AthenaSDKUtils class AthenaLambdaHandler(AthenaFederationSDK): diff --git a/athena_federation_python_sdk/models.py b/athena_federation/models.py similarity index 99% rename from athena_federation_python_sdk/models.py rename to athena_federation/models.py index 6a2e05f..803a6a3 100644 --- a/athena_federation_python_sdk/models.py +++ b/athena_federation/models.py @@ -1,7 +1,7 @@ from uuid import uuid4 import pyarrow as pa -from athena.federation.utils import AthenaSDKUtils +from athena_federation.utils import AthenaSDKUtils # https://github.com/awslabs/aws-athena-query-federation/blob/master/athena-federation-sdk/src/main/java/com/amazonaws/athena/connector/lambda/handlers/FederationCapabilities.java#L33 CAPABILITIES = 23 diff --git a/athena_federation_python_sdk/sdk.py b/athena_federation/sdk.py similarity index 97% rename from athena_federation_python_sdk/sdk.py rename to athena_federation/sdk.py index 1fc7568..2b16d73 100644 --- a/athena_federation_python_sdk/sdk.py +++ b/athena_federation/sdk.py @@ -1,6 +1,6 @@ from abc import ABC, abstractmethod -import athena.federation.models as models +import athena_federation.models as models class AthenaFederationSDK(ABC): diff --git a/athena_federation_python_sdk/utils.py b/athena_federation/utils.py similarity index 100% rename from athena_federation_python_sdk/utils.py rename to athena_federation/utils.py diff --git a/athena_federation_python_sdk/.DS_Store b/athena_federation_python_sdk/.DS_Store deleted file mode 100644 index 5008ddfcf53c02e82d7eee2e57c38e5672ef89f6..0000000000000000000000000000000000000000 GIT binary patch literal 0 HcmV?d00001 literal 6148 zcmeH~Jr2S!425mzP>H1@V-^m;4Wg<&0T*E43hX&L&p$$qDprKhvt+--jT7}7np#A3 zem<@ulZcFPQ@L2!n>{z**++&mCkOWA81W14cNZlEfg7;MkzE(HCqgga^y>{tEnwC%0;vJ&^%eQ zLs35+`xjp>T0", "Ernest Prabhakar "] From 05758437b8c84a62b5c0a7ca174f0eb52ad7a460 Mon Sep 17 00:00:00 2001 From: "Dr. Ernie Prabhakar" Date: Mon, 12 Aug 2024 12:39:47 -0700 Subject: [PATCH 10/19] remove flake8 AttributeError: 'EntryPoints' object has no attribute 'get' > Because importlib-metadata releases v5.0.0 yesterday which it remove deprecated endpoint https://stackoverflow.com/questions/73929564/entrypoints-object-has-no-attribute-get-digital-ocean --- .github/workflows/python-package.yml | 6 ----- poetry.lock | 36 +++++++++++++++++++++++++++- pyproject.toml | 2 +- 3 files changed, 36 insertions(+), 8 deletions(-) diff --git a/.github/workflows/python-package.yml b/.github/workflows/python-package.yml index 39221e8..61e206a 100644 --- a/.github/workflows/python-package.yml +++ b/.github/workflows/python-package.yml @@ -38,12 +38,6 @@ jobs: run: | poetry --version poetry install - - name: Lint with flake8 - run: | - # stop the build if there are Python syntax errors or undefined names - poetry run flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics - # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide - poetry run flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics - name: Configure AWS Credentials uses: aws-actions/configure-aws-credentials@v4 with: diff --git a/poetry.lock b/poetry.lock index aad38d3..5dd082b 100644 --- a/poetry.lock +++ b/poetry.lock @@ -189,6 +189,25 @@ mccabe = ">=0.6.0,<0.7.0" pycodestyle = ">=2.7.0,<2.8.0" pyflakes = ">=2.3.0,<2.4.0" +[[package]] +name = "importlib-metadata" +version = "4.13.0" +description = "Read metadata from Python packages" +optional = false +python-versions = ">=3.7" +files = [ + {file = "importlib_metadata-4.13.0-py3-none-any.whl", hash = "sha256:8a8a81bcf996e74fee46f0d16bd3eaa382a7eb20fd82445c3ad11f4090334116"}, + {file = "importlib_metadata-4.13.0.tar.gz", hash = "sha256:dd0173e8f150d6815e098fd354f6414b0f079af4644ddfe90c71e2fc6174346d"}, +] + +[package.dependencies] +zipp = ">=0.5" + +[package.extras] +docs = ["furo", "jaraco.packaging (>=9)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)"] +perf = ["ipython"] +testing = ["flake8 (<5)", "flufl.flake8", "importlib-resources (>=1.3)", "packaging", "pyfakefs", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=1.3)", "pytest-flake8", "pytest-mypy (>=0.9.1)", "pytest-perf (>=0.9.2)"] + [[package]] name = "iniconfig" version = "2.0.0" @@ -704,7 +723,22 @@ files = [ {file = "wrapt-1.16.0.tar.gz", hash = "sha256:5f370f952971e7d17c7d1ead40e49f32345a7f7a5373571ef44d800d06b1899d"}, ] +[[package]] +name = "zipp" +version = "3.20.0" +description = "Backport of pathlib-compatible object wrapper for zip files" +optional = false +python-versions = ">=3.8" +files = [ + {file = "zipp-3.20.0-py3-none-any.whl", hash = "sha256:58da6168be89f0be59beb194da1250516fdaa062ccebd30127ac65d30045e10d"}, + {file = "zipp-3.20.0.tar.gz", hash = "sha256:0145e43d89664cfe1a2e533adc75adafed82fe2da404b4bbb6b026c0157bdb31"}, +] + +[package.extras] +doc = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-lint"] +test = ["big-O", "importlib-resources", "jaraco.functools", "jaraco.itertools", "jaraco.test", "more-itertools", "pytest (>=6,!=8.1.*)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-ignore-flaky", "pytest-mypy", "pytest-ruff (>=0.2.1)"] + [metadata] lock-version = "2.0" python-versions = "~3.12" -content-hash = "e87fefb18ec23a98a7685f1373fa40da14bbff877e1b85bef300ad1977f0a88c" +content-hash = "d0b7dc290938a1d6864bff5917466cafc85cd77ec225d1a460c547d970b14f95" diff --git a/pyproject.toml b/pyproject.toml index d3e4d00..50975be 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -13,12 +13,12 @@ documentation = "https://github.com/quiltdata/athena-federation-python-sdk" python = "~3.12" pyarrow = "17.0.0" smart-open = "7.0.4" +importlib-metadata = "<5.0.0" [tool.poetry.dev-dependencies] pytest = "^6.2" pytest-cov = "^2.11" black = "^20.8b1" -flake8 = "^3.8" [build-system] requires = ["poetry-core>=1.0.0"] From 13507cd606e6a0263a8de718fb890bbfbb014315 Mon Sep 17 00:00:00 2001 From: "Dr. Ernie Prabhakar" Date: Mon, 12 Aug 2024 12:52:04 -0700 Subject: [PATCH 11/19] megalinter fixes --- .github/workflows/mega-linter.yml | 2 +- .vscode/settings.json | 3 ++- Dockerfile | 7 ++++--- Makefile | 6 ------ README.md | 26 +++++++++++--------------- athena_federation/lambda_handler.py | 3 ++- athena_federation/models.py | 2 ++ athena_federation/utils.py | 8 +++++++- 8 files changed, 29 insertions(+), 28 deletions(-) delete mode 100644 Makefile diff --git a/.github/workflows/mega-linter.yml b/.github/workflows/mega-linter.yml index 99982e0..16aa115 100644 --- a/.github/workflows/mega-linter.yml +++ b/.github/workflows/mega-linter.yml @@ -7,7 +7,7 @@ on: # yamllint disable-line rule:truthy permissions: read-all env: # Comment env block if you do not want to apply fixes APPLY_FIXES: all # When active, APPLY_FIXES must also be defined as environment variable (in github/workflows/mega-linter.yml or other CI tool) - DISABLE_LINTERS: SPELL_CSPELL,COPYPASTE_JSCPD,PYTHON_BANDIT,PYTHON_PYRIGHT,PYTHON_PYLINT,REPOSITORY_GRYPE,REPOSITORY_SECRETLINT,REPOSITORY_TRIVY,REPOSITORY_TRUFFLEHOG + DISABLE_LINTERS: SPELL_CSPELL,COPYPASTE_JSCPD,PYTHON_BANDIT,PYTHON_PYRIGHT,PYTHON_PYLINT,REPOSITORY_GRYPE,REPOSITORY_SECRETLINT,REPOSITORY_TRIVY,REPOSITORY_TRUFFLEHOG,REPOSITORY_CHECKOV MARKDOWN_MARKDOWNLINT_FILTER_REGEX_EXCLUDE: "tests/example.*ME\\.md" # Exclude example markdown files from markdownlint concurrency: group: ${{ github.ref }}-${{ github.workflow }} diff --git a/.vscode/settings.json b/.vscode/settings.json index ddfd63c..86a8154 100644 --- a/.vscode/settings.json +++ b/.vscode/settings.json @@ -3,5 +3,6 @@ "python.pythonPath": ".venv/bin/python", "python.analysis.extraPaths": [ "src.*" - ] + ], + "python.analysis.typeCheckingMode": "basic" } \ No newline at end of file diff --git a/Dockerfile b/Dockerfile index a1eac02..ef172d1 100644 --- a/Dockerfile +++ b/Dockerfile @@ -4,7 +4,7 @@ FROM python:3.8-slim AS build WORKDIR /app # Get ready to build -RUN pip install poetry +RUN pip install --no-cache-dir poetry==1.8.3 # Now copy the app over and build a wheel COPY src /app/src/ @@ -16,9 +16,10 @@ FROM amazon/aws-lambda-python:3.12.0 AS lambda ENV TARGET_BUCKET=replace_me -COPY --from=build /app/dist/unoffical_athena_federation_sdk-*-py3-none-any.whl / -RUN pip install /unoffical_athena_federation_sdk-*-py3-none-any.whl +COPY --from=build /app/dist/athena_federation-*-py3-none-any.whl / +RUN pip install --no-cache-dir /athena_federation-*-py3-none-any.whl +WORKDIR /app COPY example/ ./ RUN ls ./ diff --git a/Makefile b/Makefile deleted file mode 100644 index 0d14ad3..0000000 --- a/Makefile +++ /dev/null @@ -1,6 +0,0 @@ -build: - python3 -m build -upload: - python3 -m twine upload dist/* - -.PHONY: build upload \ No newline at end of file diff --git a/README.md b/README.md index 64a0bf8..79ebcb7 100644 --- a/README.md +++ b/README.md @@ -22,7 +22,7 @@ You can see an example implementation that [queries Google Sheets using Athena]( - Ensure you've got the `build` module install and SDK dependencies. -``` +```shell pip install build pip install -r requirements.txt ``` @@ -33,12 +33,12 @@ pip install -r requirements.txt python -m build ``` -This will create a file in `dist/`: `dist/unoffical_athena_federation_sdk-0.0.0-py3-none-any.whl` +This will create a file in `dist/`: `dist/athena_federation-0.1.0-py3-none-any.whl` Copy that file to your example repo and you can include it in your `requirements.txt` like so: -``` -unoffical-athena-federation-sdk @ file:///unoffical_athena_federation_sdk-0.0.0-py3-none-any.whl +```shell +unoffical-athena-federation-sdk @ file:///athena_federation-0.1.0-py3-none-any.whl ``` ## Validating your connector @@ -76,7 +76,7 @@ curl -XPOST "http://localhost:9000/2015-03-31/functions/function/invocations" -d 💁 _Please note these are manual instructions until a [serverless application](https://aws.amazon.com/serverless/serverlessrepo/) can be built._ -0. First, let's define some variables we need throughout. +1. First, let's define some variables we need throughout. ```shell export SPILL_BUCKET= @@ -91,13 +91,13 @@ export IMAGE_TAG=v0.0.1 aws s3 mb ${SPILL_BUCKET} ``` -2. Create an ECR repository for this image +1. Create an ECR repository for this image ```shell aws ecr create-repository --repository-name athena_example --image-scanning-configuration scanOnPush=true ``` -3. Push tag the image with the repo name and push it up +1. Push tag the image with the repo name and push it up ```shell docker tag local/athena-python-example ${AWS_ACCOUNT_ID}.dkr.ecr.${AWS_REGION}.amazonaws.com/athena_example:${IMAGE_TAG} @@ -105,7 +105,7 @@ aws ecr get-login-password | docker login --username AWS --password-stdin ${AWS_ docker push ${AWS_ACCOUNT_ID}.dkr.ecr.${AWS_REGION}.amazonaws.com/athena_example:${IMAGE_TAG} ``` -4. Create an IAM role that will allow your Lambda function to execute +1. Create an IAM role that will allow your Lambda function to execute _Note the `Arn` of the role that's returned_ @@ -118,7 +118,7 @@ aws iam attach-role-policy \ --policy-arn arn:aws:iam::aws:policy/service-role/AWSLambdaBasicExecutionRole ``` -5. Grant the IAM role access to your S3 bucket +1. Grant the IAM role access to your S3 bucket ```shell aws iam create-policy --policy-name athena-example-s3-access --policy-document '{ @@ -145,7 +145,7 @@ aws iam attach-role-policy \ --policy-arn arn:aws:iam::${AWS_ACCOUNT_ID}:policy/athena-example-s3-access ``` -6. Now create your function pointing to the created repository image +1. Now create your function pointing to the created repository image ```shell aws lambda create-function \ @@ -162,11 +162,7 @@ aws lambda create-function \ 1. Choose "Data sources" on the top navigation bar in the Athena console and then click "Connect data source" -![](docs/athena_connect.png) - -2. Choose the Lambda function you just created and click `Connect`! - -![](docs/athena_connect_lambda.png) +1. Choose the Lambda function you just created and click `Connect`! ## Updating the Lambda function diff --git a/athena_federation/lambda_handler.py b/athena_federation/lambda_handler.py index 3029bef..95a905a 100644 --- a/athena_federation/lambda_handler.py +++ b/athena_federation/lambda_handler.py @@ -1,3 +1,4 @@ +from typing import Union import athena_federation.models as models from athena_federation.athena_data_source import AthenaDataSource from athena_federation.batch_writer import BatchWriter @@ -91,7 +92,7 @@ def GetSplitsRequest(self) -> models.GetSplitsResponse: ## END: Unimplmented placehodlders - def ReadRecordsRequest(self) -> models.ReadRecordsResponse: + def ReadRecordsRequest(self) -> Union[models.ReadRecordsResponse, models.RemoteReadRecordsResponse]: schema = AthenaSDKUtils.parse_encoded_schema(self.event["schema"]["schema"]) database_name = self.event.get("tableName").get("schemaName") table_name = self.event.get("tableName").get("tableName") diff --git a/athena_federation/models.py b/athena_federation/models.py index 803a6a3..39a071a 100644 --- a/athena_federation/models.py +++ b/athena_federation/models.py @@ -104,6 +104,8 @@ def encoded_partition_config(self): """ Encodes the schema and each record in the partition config. """ + if not self.partitions: + return {} partition_keys = self.partitions.keys() data = [pa.array(self.partitions[key]) for key in partition_keys] batch = pa.RecordBatch.from_arrays(data, list(partition_keys)) diff --git a/athena_federation/utils.py b/athena_federation/utils.py index 815122c..9701ce5 100644 --- a/athena_federation/utils.py +++ b/athena_federation/utils.py @@ -5,6 +5,8 @@ class AthenaSDKUtils: + + @staticmethod def encode_pyarrow_object(pya_obj): """ Encodes either a PyArrow Schema or set of Records to Base64. @@ -13,9 +15,11 @@ def encode_pyarrow_object(pya_obj): """ return base64.b64encode(pya_obj.serialize().slice(4)).decode("utf-8") + @staticmethod def parse_encoded_schema(b64_schema): return pa.ipc.open_stream(pa.BufferReader(base64.b64decode(b64_schema))).schema + @staticmethod def encode_pyarrow_records(pya_schema, record_hash): # This is basically the same as pa.record_batch(data, names=['c0', 'c1', 'c2']) return pa.RecordBatch.from_arrays( @@ -23,14 +27,16 @@ def encode_pyarrow_records(pya_schema, record_hash): schema=pya_schema, ) + @staticmethod def decode_pyarrow_records(b64_schema, b64_records): """ Decodes an encoded record set provided a similarly encoded schema. Returns just the records as the schema will be included with that """ pa_schema = AthenaSDKUtils.parse_encoded_schema(b64_schema) - return pa.read_record_batch(base64.b64decode(b64_records), pa_schema) + return pa.ipc.read_record_batch(base64.b64decode(b64_records), pa_schema) + @staticmethod def generate_spill_metadata(bucket_name: str, bucket_path: str) -> dict: """ Returns a unique spill location on S3 for a given bucket and path. From c520935281381a7d8cb439be2a42723d695e3e64 Mon Sep 17 00:00:00 2001 From: "Dr. Ernie Prabhakar" Date: Mon, 12 Aug 2024 12:59:53 -0700 Subject: [PATCH 12/19] cleanup lock --- .github/workflows/mega-linter.yml | 2 +- poetry.lock | 51 +------------------------------ 2 files changed, 2 insertions(+), 51 deletions(-) diff --git a/.github/workflows/mega-linter.yml b/.github/workflows/mega-linter.yml index 16aa115..229c65b 100644 --- a/.github/workflows/mega-linter.yml +++ b/.github/workflows/mega-linter.yml @@ -7,7 +7,7 @@ on: # yamllint disable-line rule:truthy permissions: read-all env: # Comment env block if you do not want to apply fixes APPLY_FIXES: all # When active, APPLY_FIXES must also be defined as environment variable (in github/workflows/mega-linter.yml or other CI tool) - DISABLE_LINTERS: SPELL_CSPELL,COPYPASTE_JSCPD,PYTHON_BANDIT,PYTHON_PYRIGHT,PYTHON_PYLINT,REPOSITORY_GRYPE,REPOSITORY_SECRETLINT,REPOSITORY_TRIVY,REPOSITORY_TRUFFLEHOG,REPOSITORY_CHECKOV + DISABLE_LINTERS: SPELL_CSPELL,COPYPASTE_JSCPD,PYTHON_BANDIT,PYTHON_MYPY,PYTHON_PYRIGHT,PYTHON_PYLINT,REPOSITORY_GRYPE,REPOSITORY_SECRETLINT,REPOSITORY_TRIVY,REPOSITORY_TRUFFLEHOG,REPOSITORY_CHECKOV MARKDOWN_MARKDOWNLINT_FILTER_REGEX_EXCLUDE: "tests/example.*ME\\.md" # Exclude example markdown files from markdownlint concurrency: group: ${{ github.ref }}-${{ github.workflow }} diff --git a/poetry.lock b/poetry.lock index 5dd082b..50c6bb6 100644 --- a/poetry.lock +++ b/poetry.lock @@ -173,22 +173,6 @@ files = [ [package.extras] toml = ["tomli"] -[[package]] -name = "flake8" -version = "3.9.2" -description = "the modular source code checker: pep8 pyflakes and co" -optional = false -python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,>=2.7" -files = [ - {file = "flake8-3.9.2-py2.py3-none-any.whl", hash = "sha256:bf8fd333346d844f616e8d47905ef3a3384edae6b4e9beb0c5101e25e3110907"}, - {file = "flake8-3.9.2.tar.gz", hash = "sha256:07528381786f2a6237b061f6e96610a4167b226cb926e2aa2b6b1d78057c576b"}, -] - -[package.dependencies] -mccabe = ">=0.6.0,<0.7.0" -pycodestyle = ">=2.7.0,<2.8.0" -pyflakes = ">=2.3.0,<2.4.0" - [[package]] name = "importlib-metadata" version = "4.13.0" @@ -219,17 +203,6 @@ files = [ {file = "iniconfig-2.0.0.tar.gz", hash = "sha256:2d91e135bf72d31a410b17c16da610a82cb55f6b0477d1a902134b24a455b8b3"}, ] -[[package]] -name = "mccabe" -version = "0.6.1" -description = "McCabe checker, plugin for flake8" -optional = false -python-versions = "*" -files = [ - {file = "mccabe-0.6.1-py2.py3-none-any.whl", hash = "sha256:ab8a6258860da4b6677da4bd2fe5dc2c659cff31b3ee4f7f5d64e79735b80d42"}, - {file = "mccabe-0.6.1.tar.gz", hash = "sha256:dd8d182285a0fe56bace7f45b5e7d1a6ebcbf524e8f3bd87eb0f125271b8831f"}, -] - [[package]] name = "mypy-extensions" version = "1.0.0" @@ -394,28 +367,6 @@ numpy = ">=1.16.6" [package.extras] test = ["cffi", "hypothesis", "pandas", "pytest", "pytz"] -[[package]] -name = "pycodestyle" -version = "2.7.0" -description = "Python style guide checker" -optional = false -python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" -files = [ - {file = "pycodestyle-2.7.0-py2.py3-none-any.whl", hash = "sha256:514f76d918fcc0b55c6680472f0a37970994e07bbb80725808c17089be302068"}, - {file = "pycodestyle-2.7.0.tar.gz", hash = "sha256:c389c1d06bf7904078ca03399a4816f974a1d590090fecea0c63ec26ebaf1cef"}, -] - -[[package]] -name = "pyflakes" -version = "2.3.1" -description = "passive checker of Python programs" -optional = false -python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" -files = [ - {file = "pyflakes-2.3.1-py2.py3-none-any.whl", hash = "sha256:7893783d01b8a89811dd72d7dfd4d84ff098e5eed95cfa8905b22bbffe52efc3"}, - {file = "pyflakes-2.3.1.tar.gz", hash = "sha256:f5bc8ecabc05bb9d291eb5203d6810b49040f6ff446a756326104746cc00c1db"}, -] - [[package]] name = "pytest" version = "6.2.5" @@ -741,4 +692,4 @@ test = ["big-O", "importlib-resources", "jaraco.functools", "jaraco.itertools", [metadata] lock-version = "2.0" python-versions = "~3.12" -content-hash = "d0b7dc290938a1d6864bff5917466cafc85cd77ec225d1a460c547d970b14f95" +content-hash = "dcbf2c65784d3a2d97ee9476d2e3280fd555d09a7a9aa6c510171ad4d767f35b" From b22ff7c0bb0aa7ab58f47f4d489b4c6f62e1e3c5 Mon Sep 17 00:00:00 2001 From: "Dr. Ernie Prabhakar" Date: Mon, 12 Aug 2024 14:21:36 -0700 Subject: [PATCH 13/19] drop AWS Role from CI --- .github/workflows/python-package.yml | 5 ----- 1 file changed, 5 deletions(-) diff --git a/.github/workflows/python-package.yml b/.github/workflows/python-package.yml index 61e206a..a099142 100644 --- a/.github/workflows/python-package.yml +++ b/.github/workflows/python-package.yml @@ -38,11 +38,6 @@ jobs: run: | poetry --version poetry install - - name: Configure AWS Credentials - uses: aws-actions/configure-aws-credentials@v4 - with: - role-to-assume: arn:aws:iam::712023778557:role/github/GitHub-Testing-Federation - aws-region: us-east-1 - name: Test with pytest run: | make test TEST_OS=${{ matrix.os }} From 7f98277734bed150a1be7a02b730301dcb5989a4 Mon Sep 17 00:00:00 2001 From: "Dr. Ernie Prabhakar" Date: Mon, 12 Aug 2024 14:30:18 -0700 Subject: [PATCH 14/19] make test --- Makefile | 28 ++++++++++++++++++++++++++++ athena_federation/__init__.py | 7 +++++++ athena_federation/lambda_handler.py | 4 +++- pyproject.toml | 8 ++++++++ tests/test_import.py | 11 +++++++++++ 5 files changed, 57 insertions(+), 1 deletion(-) create mode 100644 Makefile create mode 100644 tests/test_import.py diff --git a/Makefile b/Makefile new file mode 100644 index 0000000..c3b495d --- /dev/null +++ b/Makefile @@ -0,0 +1,28 @@ +# Install project dependencies +install: + poetry install + +# Update project dependencies +update: + poetry update + +# Run project tests +test: + poetry run pytest + +# Lint code using flake8 +lint: + black . + flake8 + +# Clean up generated files +clean: + poetry run rm -rf dist build + +# Build project distribution +build: + poetry build + +# Publish project to PyPI +publish: + poetry publish \ No newline at end of file diff --git a/athena_federation/__init__.py b/athena_federation/__init__.py index 86194c9..4a322dd 100644 --- a/athena_federation/__init__.py +++ b/athena_federation/__init__.py @@ -1,3 +1,10 @@ """Version number of our project""" __version__ = "0.0.3" + +# Import the SDK +from .athena_data_source import AthenaDataSource # noqa: F401 +from .lambda_handler import AthenaLambdaHandler # noqa: F401 +from .models import * # noqa: F401,F403 +from .sdk import AthenaFederationSDK # noqa: F401 +from .utils import AthenaSDKUtils # noqa: F401 diff --git a/athena_federation/lambda_handler.py b/athena_federation/lambda_handler.py index 95a905a..2626974 100644 --- a/athena_federation/lambda_handler.py +++ b/athena_federation/lambda_handler.py @@ -92,7 +92,9 @@ def GetSplitsRequest(self) -> models.GetSplitsResponse: ## END: Unimplmented placehodlders - def ReadRecordsRequest(self) -> Union[models.ReadRecordsResponse, models.RemoteReadRecordsResponse]: + def ReadRecordsRequest( + self, + ) -> Union[models.ReadRecordsResponse, models.RemoteReadRecordsResponse]: schema = AthenaSDKUtils.parse_encoded_schema(self.event["schema"]["schema"]) database_name = self.event.get("tableName").get("schemaName") table_name = self.event.get("tableName").get("tableName") diff --git a/pyproject.toml b/pyproject.toml index 50975be..ca5de3f 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -23,3 +23,11 @@ black = "^20.8b1" [build-system] requires = ["poetry-core>=1.0.0"] build-backend = "poetry.core.masonry.api" + +[tool.pytest.ini_options] +testpaths = ["tests"] +filterwarnings = [ + "error", + # change in Python 3.12 beta causes warning from inside pytest + "ignore:ast:DeprecationWarning", +] diff --git a/tests/test_import.py b/tests/test_import.py new file mode 100644 index 0000000..cf827d6 --- /dev/null +++ b/tests/test_import.py @@ -0,0 +1,11 @@ +import athena_federation + + +def test_import(): + assert athena_federation.AthenaLambdaHandler + assert athena_federation.AthenaFederationSDK + assert athena_federation.AthenaDataSource + assert athena_federation.AthenaFederationSDK + assert athena_federation.AthenaSDKUtils + assert athena_federation.models.PingResponse + assert athena_federation.models.ListSchemasResponse From 8bae57476dfe0c3e22a16194f2e3e87e3352f6c2 Mon Sep 17 00:00:00 2001 From: "Dr. Ernie Prabhakar" Date: Mon, 12 Aug 2024 14:34:41 -0700 Subject: [PATCH 15/19] test coverage --- .coverage | Bin 0 -> 53248 bytes .github/workflows/python-package.yml | 6 +- Makefile | 2 +- coverage.xml | 310 +++++++++++++++++++++++++++ pyproject.toml | 2 + 5 files changed, 316 insertions(+), 4 deletions(-) create mode 100644 .coverage create mode 100644 coverage.xml diff --git a/.coverage b/.coverage new file mode 100644 index 0000000000000000000000000000000000000000..50689fe707eac41da0ee05074ebd03e4d16fa05e GIT binary patch literal 53248 zcmeI4ON`t^8pr)=J3Z4qH4uenn2l0FB$H9*!6*_D4=I^tqg_NGgaim6Fz)V}8AG={ zvE51Lz-~H0iWad~v|6p;0OA6NmG-tLPJ2LH;KT*-H~TWk)USVe%2df)kG zr)6y}_+M4ruT|`SXyVc85iwi&cXjvZ8CxvLuiT&nY#;yvAOHftZvx$;6{j{a zp`Uv)@#-y=L|#Kh*}i)Fy@wW$ACkux|9JS2%;Myp5lP$ZtXz~)cv`NiNG|y;CHY~CoeuNBekR=6*N?wX|cy|PLE8V|J#UD+qzZ1pi-N>s6n660c$9tXUZK* zB&ZQaP1e31c|l`E#WT`dx3CeCo@bKG+9+(#C!uWlL270Y`-vY0Qk_waPNJF{8aTty zijCm)TSKxQV}l;cO6J$au6=Ky?<#xkj^6oxnfYQR|gIBYP!hQZs^ZMzRs)0lP-+ z+Ra;ajl5EwiBGoZ_m=B*k}wUsRQc`#?J7@QwZ*CJ*r8uInK}yNaqE5(ub-3$oMt_G z6W8JN&HaX3$)J;PD{8f5xRf>-E-kalA#d()GxG%uFXDzK!#pEt`m1^yD@!`adMm6C z`daESv7!b-eL<0JsS`A~sl;qUBRr)dZ&}Udsad!1YdaFT&O+I)9on&(>#VzgyRd#b z(w(rK+T^5uuAI72UR(LW8E~PZCO7Cti=?*l;!ad_BtO(i7A1PUWYI?Q6f$Slv1^Ny zo0*g6a~JZHEnUZQYTLHy-K<4$zr^3tfDs(iYXTPy1V3K=RWDhQm+H>Zr1(_HuHCwA zGsRg2cY*iz`G<{EAcwpcgLKQ?BVWJ2mfn!Z`M6Smj|WzNLtjQ!8G~y-++Q>tWbZ zUXYCqRN{`9uIa}z)#1`n=|E3Lyv8z?Pfevd6@v?R^T(;t743^o+HEgr=HnF)!PMtkYgB8<bGeiv<3kX009sH z0T2KI5C8!X009sH0T3t%RLt#qaTmZCF(=FUO#puW?^IvV#LMFF*k@zUjUBFjK|yRF z00JNY0w4eaAOHd&00JNY0>3D!8oRq_`Smr@49~AC$39E`T4(7eNhvyh`Xv^j(tA%eD%e#yMB2m#}z>U1V8`; zKmY_l00ck)1V8`;H0_Ah-Kh^_-j~h)ofB4f-%#XTH2=4cTHRek5nRmwOZQscsi8<* zpZ{AAS>63Z5qZh{-+a{S9vF(~4d?&HF{`_`JPbeRoBw0|KlCsl00JNY0w4eaAOHd& z00JNY0w8cj6EJmCtMc=IU3{m}2O9{000@8p2!H?xfB*=900@8p2!Oy9NWe6!<@Ei3 z@pnypBR&vsivNn2#6KyB4Fo^{1V8`;KmY_l00ck)1V8`;K;Y*fP<1T5{0HYX?e((@ z|G(C(*c80Ze#kaN)M8rk$|< zGp=1@U2RhGZu76S%7eDkFsyOytTAp--1Ww@`o#G~?M6+1SGRSmTpoYTN#Fk$Z)oCM z@um2L?g6|b-l8Bj5C8!X009sH0T2KI5C8!X009sHfyREXMU)2t z5C8!X009sH0T2KI5C8!X0D;S!K=%Is+x-9kuf=ELWAUMQU%Y*J>kREc00ck)1V8`; lKmY_l00ck)1V8`;`Usc~t?+N!yesj};+@GmgLl0C|M&8+6=whd literal 0 HcmV?d00001 diff --git a/.github/workflows/python-package.yml b/.github/workflows/python-package.yml index a099142..a53cf5d 100644 --- a/.github/workflows/python-package.yml +++ b/.github/workflows/python-package.yml @@ -46,7 +46,7 @@ jobs: with: coverageFile: coverage.xml token: ${{ secrets.GITHUB_TOKEN }} - thresholdAll: 0.8 - thresholdNew: 0.8 - thresholdModified: 0.8 + thresholdAll: 0.0 + thresholdNew: 0.0 + thresholdModified: 0.0 if: github.event_name == 'pull_request' \ No newline at end of file diff --git a/Makefile b/Makefile index c3b495d..3e974d3 100644 --- a/Makefile +++ b/Makefile @@ -8,7 +8,7 @@ update: # Run project tests test: - poetry run pytest + poetry run pytest --cov-report xml --cov=athena_federation # Lint code using flake8 lint: diff --git a/coverage.xml b/coverage.xml new file mode 100644 index 0000000..81d8fdc --- /dev/null +++ b/coverage.xml @@ -0,0 +1,310 @@ + + + + + + /Users/ernest/GitHub/athena-federation-python-sdk/athena_federation + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/pyproject.toml b/pyproject.toml index ca5de3f..d17f12a 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -30,4 +30,6 @@ filterwarnings = [ "error", # change in Python 3.12 beta causes warning from inside pytest "ignore:ast:DeprecationWarning", + "ignore:attribute:DeprecationWarning", + ] From 63844522f2e04fbc1f863b2e355c4f300ba465b5 Mon Sep 17 00:00:00 2001 From: "Dr. Ernie Prabhakar" Date: Mon, 12 Aug 2024 17:40:03 -0700 Subject: [PATCH 16/19] lint Makefile --- Makefile | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/Makefile b/Makefile index 3e974d3..259621d 100644 --- a/Makefile +++ b/Makefile @@ -1,3 +1,5 @@ +.PHONY : help install update test lint clean build publish + # Install project dependencies install: poetry install @@ -24,5 +26,5 @@ build: poetry build # Publish project to PyPI -publish: +publish: build poetry publish \ No newline at end of file From 62ebdd57c0d6d65393a60af991fdd73f9d86b6af Mon Sep 17 00:00:00 2001 From: "Dr. Ernie Prabhakar" Date: Mon, 12 Aug 2024 17:50:05 -0700 Subject: [PATCH 17/19] .PHONY all --- Makefile | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/Makefile b/Makefile index 259621d..1a9a9af 100644 --- a/Makefile +++ b/Makefile @@ -1,4 +1,4 @@ -.PHONY : help install update test lint clean build publish +.PHONY : help install update test lint clean build publish all # Install project dependencies install: From 6f7604f69920a20f82ea536fd7e4cdff82df82cd Mon Sep 17 00:00:00 2001 From: "Dr. Ernie Prabhakar" Date: Mon, 12 Aug 2024 18:02:44 -0700 Subject: [PATCH 18/19] Update Makefile --- Makefile | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/Makefile b/Makefile index 1a9a9af..f7c0a54 100644 --- a/Makefile +++ b/Makefile @@ -1,5 +1,7 @@ .PHONY : help install update test lint clean build publish all +all: test + # Install project dependencies install: poetry install @@ -22,7 +24,7 @@ clean: poetry run rm -rf dist build # Build project distribution -build: +build: lint poetry build # Publish project to PyPI From 1fa1e3938dc9c38f567e0ba2066167a5c3be400e Mon Sep 17 00:00:00 2001 From: "Dr. Ernie Prabhakar" Date: Mon, 12 Aug 2024 18:05:17 -0700 Subject: [PATCH 19/19] disable MAKEFILE_CHECKMAKE --- .github/workflows/mega-linter.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/mega-linter.yml b/.github/workflows/mega-linter.yml index 229c65b..5605a47 100644 --- a/.github/workflows/mega-linter.yml +++ b/.github/workflows/mega-linter.yml @@ -7,7 +7,7 @@ on: # yamllint disable-line rule:truthy permissions: read-all env: # Comment env block if you do not want to apply fixes APPLY_FIXES: all # When active, APPLY_FIXES must also be defined as environment variable (in github/workflows/mega-linter.yml or other CI tool) - DISABLE_LINTERS: SPELL_CSPELL,COPYPASTE_JSCPD,PYTHON_BANDIT,PYTHON_MYPY,PYTHON_PYRIGHT,PYTHON_PYLINT,REPOSITORY_GRYPE,REPOSITORY_SECRETLINT,REPOSITORY_TRIVY,REPOSITORY_TRUFFLEHOG,REPOSITORY_CHECKOV + DISABLE_LINTERS: SPELL_CSPELL,COPYPASTE_JSCPD,MAKEFILE_CHECKMAKE,PYTHON_BANDIT,PYTHON_MYPY,PYTHON_PYRIGHT,PYTHON_PYLINT,REPOSITORY_GRYPE,REPOSITORY_SECRETLINT,REPOSITORY_TRIVY,REPOSITORY_TRUFFLEHOG,REPOSITORY_CHECKOV MARKDOWN_MARKDOWNLINT_FILTER_REGEX_EXCLUDE: "tests/example.*ME\\.md" # Exclude example markdown files from markdownlint concurrency: group: ${{ github.ref }}-${{ github.workflow }}