I guess .gitmodules should be adjusted

[yarikoptic]

head1:/data/movieloc/data/studyforrest/visloc/src
$> git diff
diff --git a/.gitmodules b/.gitmodules
index 01412c0..4524430 100644
--- a/.gitmodules
+++ b/.gitmodules
@@ -1,9 +1,9 @@
 [submodule "src/phase2"]
        path = src/phase2
-   url = ../phase2
+ url = ../studyforrest-data-phase2
 [submodule "src/tnt"]
        path = src/tnt
        url = ../tnt
 [submodule "src/aligned"]
        path = src/aligned
-   url = ../aligned
+ url = ../studyforrest-data-aligned

(not sure what for tnt). but then stuff needs to be pushed I guess for aligned?

$> git submodule update --init aligned
Cloning into 'src/aligned'...
remote: Counting objects: 9877, done.
remote: Total 9877 (delta 0), reused 0 (delta 0), pack-reused 9877
Receiving objects: 100% (9877/9877), 838.38 KiB | 0 bytes/s, done.
Resolving deltas: 100% (134/134), done.
Checking connectivity... done.
fatal: reference is not a tree: 046713bbeb2ae381685e1ffe31fb651024797693
Unable to checkout '046713bbeb2ae381685e1ffe31fb651024797693' in submodule path 'aligned'

[mih]

Thanks for the report and the patch. It should work now. Please try and close this one if successful.