figure for what calls what and is created by what

[Remi-Gau]

Currently trying to get an overview of the implementation for fmriprep.

Started playing around with making DAGs with makefile and makefile2graph.

Could this be useful? At the moment it is a big mess but could be improved maube

I am still not quite sure how to best explain how runJOB.sh, process.sbatch and all.jobs would be related in a DAG though. Mostly because I know next to nothing about how HPCs works...

.PHONY: /home/user/license.txt BIDS_datalad_ds ReproNim_containers bootstrap.sh

ria_output/fmriprep/sub-id: /dev/shm/job_id ria_output fbig/code/participant_job

/dev/shm/job_id: fbig/code/runfmriprep.sh

fbig/code/runfmriprep.sh: bids_fmriprep bootstrap.sh
bids_fmriprep: fbig/code/pipeline/images/bids/bids-fmriprep.sing bootstrap.sh

fbig/code/pipeline/images/bids/bids-fmriprep.sing: bootstrap.sh fbig/code/participant_job fbig/inputs/data/sub-id fbig/code/license.txt

fbig/code/participant_job: fbig/code/call.job bootstrap.sh 

fbig/code/call.job: fbig/code/all.jobs bootstrap.sh

fbig/code/all.jobs: fbig/code/process.sbatch bootstrap.sh

fbig/code/runJOB.sh: bootstrap.sh

fbig/code/process.sbatch: bootstrap.sh

fbig/code/license.txt: bootstrap.sh


bootstrap.sh: BIDS_datalad_ds /home/user/license.txt ReproNim_containers
ria_output: bootstrap.sh
ria_input/inputs/data: bootstrap.sh
fbig/inputs/data/sub-id: bootstrap.sh 

then call

make -Bnd | make2graph | dot -Tpng -o out.png