Apptainer.2022.11

Bootstrap: docker
From: quay.io/qiime2/core:2022.11

%labels
Maintainer ben.warren@plantandfood.co.nz
Version 2022.11

%post
  chmod 775 /home/qiime2/q2cli/cache/completion.sh

%runscript
if [ -x /opt/conda/envs/qiime2-2022.11/bin/$SINGULARITY_NAME ]; then
    exec $SINGULARITY_NAME "$@"
else
  /bin/echo -e "This Singularity image cannot provide a single entrypoint. Please use \"singularity exec $SINGULARITY_NAME <cmd>\", where <cmd> is one of the following:\n"
  exec echo biom qiime
fi