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Release notes
Temp output file that describes the treatment of every read (mapped, unmapped, filtered, why it was filtered)
aln_block_len now configurable (default still 0.6 of the min read length|)
logos in the report are now clickable to go to the website and to go to repo
ID'ed a bug in config parsing, newer arguments were being ignored. now updated to use globals() python to find defined in config, rather than an explicit set of arguments that needs maintaining
Two new lang dict keys for info on piranha and how to cite it in the report (currently biorxiv link)
show only flagged seqs table in report if there are flagged seqs
Colour by whether cns could be generated (issue #131)
rm eng and french specific reports
Update local database flag added, but need to supply supp seqs
display name added to local db, but think this should change (legacy from rampart) **
fixing positive and negative parsing when using config.yaml
Updating eg report son website to contain phylo and configuration table
fixing metadata merging bug between barcodes.csv and supplementary_metadata.csv
