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meta-schema.json
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{
"$schema": "http://json-schema.org/draft-07/schema",
"title": "Meta yaml",
"description": "Validate the meta yaml file for an nf-core module",
"type": "object",
"properties": {
"name": {
"type": "string",
"description": "Name of the module"
},
"description": {
"type": "string",
"description": "Description of the module"
},
"keywords": {
"type": "array",
"description": "Keywords for the module",
"items": {
"type": "string"
},
"minItems": 3
},
"authors": {
"type": "array",
"description": "Authors of the module",
"items": {
"type": "string"
}
},
"maintainers": {
"type": "array",
"description": "Maintainers of the module",
"items": {
"type": "string"
}
},
"input": {
"type": "array",
"description": "Input channels for the module",
"items": {
"type": "array",
"items": { "$ref": "#/definitions/elementProperties" }
}
},
"output": {
"type": "array",
"description": "Output channels for the module",
"items": {
"type": "object",
"patternProperties": {
".*": {
"type": "array",
"items": {
"$ref": "#/definitions/elementProperties"
}
}
}
}
},
"tools": {
"type": "array",
"description": "Tools used by the module",
"items": {
"type": "object",
"patternProperties": {
".*": {
"type": "object",
"properties": {
"description": {
"type": "string",
"description": "Description of the output channel"
},
"homepage": {
"type": "string",
"description": "Homepage of the tool",
"pattern": "^(http|https)://.*$"
},
"documentation": {
"type": "string",
"description": "Documentation of the tool",
"pattern": "^(http|https|ftp)://.*$"
},
"tool_dev_url": {
"type": "string",
"description": "URL of the development version of the tool's documentation",
"pattern": "^(http|https)://.*$"
},
"doi": {
"description": "DOI of the tool",
"anyOf": [
{
"type": "string",
"pattern": "^10\\.\\d{4,9}\\/[^,]+$"
},
{
"type": "string",
"enum": ["no DOI available"]
}
]
},
"licence": {
"type": "array",
"items": {
"type": "string"
},
"description": "Licence of the tool",
"minItems": 1,
"uniqueItems": true,
"message": "Licence must be an array of one or more entries, e.g. [\"MIT\"]"
},
"identifier": {
"description": "bio.tools identifier of the tool",
"anyOf": [
{
"type": "string",
"pattern": "^biotools:.*$"
},
{
"type": "string",
"maxLength": 0
}
]
}
},
"required": ["description"],
"anyOf": [
{
"required": ["homepage"]
},
{
"required": ["documentation"]
},
{
"required": ["tool_dev_url"]
},
{
"required": ["doi"]
}
]
}
}
}
}
},
"definitions": {
"elementProperties": {
"type": "object",
"patternProperties": {
".*": {
"type": "object",
"properties": {
"type": {
"type": "string",
"description": "Type of the channel element",
"enum": ["map", "file", "directory", "string", "integer", "float", "boolean", "list"]
},
"description": {
"type": "string",
"description": "Description of the channel"
},
"pattern": {
"type": "string",
"description": "Pattern of the channel, given in Java glob syntax"
},
"enum": {
"type": "array",
"description": "List of allowed values for the channel",
"items": {
"type": ["string", "number", "boolean", "array", "object"]
},
"uniqueItems": true
},
"ontologies": {
"type": "array",
"description": "List of ontologies for the channel",
"uniqueItems": true,
"items": {
"type": "object",
"patternProperties": {
".*": {
"type": "string",
"pattern": "^(http|https)://.*"
}
}
}
}
},
"required": ["type", "description"]
}
}
}
},
"required": ["name", "description", "keywords", "authors", "output", "tools"]
}