From 78b2e0582ada45815279faeb410d2ff5a7b54e2d Mon Sep 17 00:00:00 2001
From: Daniel D'Avella <dan.davella@pixee.ai>
Date: Wed, 15 Nov 2023 12:28:21 -0500
Subject: [PATCH] Move extra dependencies to pyproject.toml

---
 .github/workflows/codemod_pygoat.yml   |  2 +-
 .github/workflows/integration_test.yml |  2 +-
 .github/workflows/lint.yml             |  4 ++--
 .github/workflows/test.yml             |  2 +-
 CONTRIBUTING.md                        |  2 +-
 pyproject.toml                         | 25 +++++++++++++++++++++++++
 requirements/complexity.txt            |  2 --
 requirements/test.txt                  | 14 --------------
 tests/README.md                        |  7 -------
 9 files changed, 31 insertions(+), 29 deletions(-)
 delete mode 100644 requirements/complexity.txt
 delete mode 100644 requirements/test.txt
 delete mode 100644 tests/README.md

diff --git a/.github/workflows/codemod_pygoat.yml b/.github/workflows/codemod_pygoat.yml
index a90a0239..b5549c2b 100644
--- a/.github/workflows/codemod_pygoat.yml
+++ b/.github/workflows/codemod_pygoat.yml
@@ -30,7 +30,7 @@ jobs:
       - name: Install Codemodder Package
         run: pip install .
       - name: Install Test Dependencies
-        run: pip install -r requirements/test.txt
+        run: pip install ".[test]"
       - name: Check out Pygoat
         uses: actions/checkout@v4
         with:
diff --git a/.github/workflows/integration_test.yml b/.github/workflows/integration_test.yml
index 79a73213..924d965d 100644
--- a/.github/workflows/integration_test.yml
+++ b/.github/workflows/integration_test.yml
@@ -33,6 +33,6 @@ jobs:
       - name: Install Codemodder Package
         run: pip install .
       - name: Install Dependencies
-        run: pip install -r requirements/test.txt
+        run: pip install ".[test]"
       - name: Run integration tests
         run: make integration-test
diff --git a/.github/workflows/lint.yml b/.github/workflows/lint.yml
index 813c1b5d..cff02ef7 100644
--- a/.github/workflows/lint.yml
+++ b/.github/workflows/lint.yml
@@ -30,7 +30,7 @@ jobs:
       - name: Install Codemodder Package
         run: pip install .
       - name: Install Dependencies
-        run: pip install -r requirements/test.txt
+        run: pip install ".[test]"
       - name: Run pylint
         run: make lint
 
@@ -47,7 +47,7 @@ jobs:
         uses: actions/checkout@v4
       - name: Install Dependencies
         run: |
-          pip install -r requirements/complexity.txt
+          pip install ".[complexity]"
       - name: Run Radon
         run: make radon
       - name: Run Xenon
diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml
index 7cc73990..865ee26d 100644
--- a/.github/workflows/test.yml
+++ b/.github/workflows/test.yml
@@ -50,7 +50,7 @@ jobs:
       - name: Install Codemodder Package
         run: pip install .
       - name: Install Dependencies
-        run: pip install -r requirements/test.txt
+        run: pip install ".[test]"
       - name: Run unit tests
         run: make test
       - name: Upload coverage reports to Codecov
diff --git a/CONTRIBUTING.md b/CONTRIBUTING.md
index aa4600a8..1f15e38f 100644
--- a/CONTRIBUTING.md
+++ b/CONTRIBUTING.md
@@ -17,7 +17,7 @@ to specify a specific Python version. If using `bash` or any compatible shell, a
 
 1. `cd codemodder-python` and `pip install -e .` to install the package in development mode
 
-1. Run `pip install -r` on all the files under `requirements/` to install packages used for development and testing
+1. Run `pip install ".[all]"` to install packages used for development and testing
 
 1. You should now be able to run `pylint`, `pytest`, etc.
 
diff --git a/pyproject.toml b/pyproject.toml
index b60d9a19..75d79f86 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -41,6 +41,31 @@ Repository = "https://github.com/pixee/codemodder-python"
 codemodder = "codemodder.codemodder:main"
 generate-docs = 'codemodder.scripts.generate_docs:main'
 
+[project.optional-dependencies]
+test = [
+    "coverage==7.3.*",
+    "Flask<4",
+    "GitPython<4",
+    "Jinja2~=3.1.2",
+    "lxml~=4.9.3",
+    "mock==5.1.*",
+    "pre-commit<4",
+    "Pyjwt~=2.8.0",
+    "pytest==7.4.*",
+    "pytest-cov~=4.1.0",
+    "pytest-mock~=3.12.0",
+    "pytest-xdist==3.*",
+    "security~=1.2.0",
+    "types-mock==5.1.*",
+]
+complexity = [
+    "radon==6.0.*",
+    "xenon==0.9.*",
+]
+all = [
+    "codemodder[test]",
+    "codemodder[complexity]",
+]
 
 [project.entry-points.codemods]
 core = "core_codemods:registry"
diff --git a/requirements/complexity.txt b/requirements/complexity.txt
deleted file mode 100644
index b709853c..00000000
--- a/requirements/complexity.txt
+++ /dev/null
@@ -1,2 +0,0 @@
-radon==6.0.*
-xenon==0.9.*
diff --git a/requirements/test.txt b/requirements/test.txt
deleted file mode 100644
index be6900b0..00000000
--- a/requirements/test.txt
+++ /dev/null
@@ -1,14 +0,0 @@
-coverage==7.3.*
-Flask<4
-GitPython<4
-Jinja2~=3.1.2
-lxml~=4.9.3
-mock==5.1.*
-pre-commit<4
-Pyjwt~=2.8.0
-pytest==7.4.*
-pytest-cov~=4.1.0
-pytest-mock~=3.12.0
-pytest-xdist==3.*
-security~=1.2.0
-types-mock==5.1.*
diff --git a/tests/README.md b/tests/README.md
deleted file mode 100644
index 7a8c33e4..00000000
--- a/tests/README.md
+++ /dev/null
@@ -1,7 +0,0 @@
-# Running tests
-
-```bash
-pip install -r requirements.txt
-pytest
-pytest -v  # -s, --pdb, etc
-```