cbstools-lib-files.sh

cbstools_files=(
  "de/mpg/cbs/libraries/BasicDemonsWarping.java"
  "de/mpg/cbs/libraries/BasicRigidRegistration.java"
  "de/mpg/cbs/libraries/BinaryTopology.java"
  "de/mpg/cbs/libraries/Gdm3d.java"
  "de/mpg/cbs/libraries/ImageFilters.java"
  "de/mpg/cbs/libraries/ImageGeometry.java"
  "de/mpg/cbs/libraries/ImageInterpolation.java"
  "de/mpg/cbs/libraries/ImageStatistics.java"
  "de/mpg/cbs/libraries/ObjectExtraction.java"
  "de/mpg/cbs/libraries/ObjectGeometry.java"
  "de/mpg/cbs/libraries/ObjectLabeling.java"
  "de/mpg/cbs/libraries/ObjectMorphology.java"
  "de/mpg/cbs/libraries/ObjectStatistics.java"
  "de/mpg/cbs/libraries/ObjectTransforms.java"
  "de/mpg/cbs/libraries/ParametricTransform.java"

  "de/mpg/cbs/methods/AnatomicallyConsistentEnhancement.java"
  "de/mpg/cbs/methods/CorticalProfile.java"
  "de/mpg/cbs/methods/InflateGdm.java"
  "de/mpg/cbs/methods/MaxProbaRepresentation.java"
  "de/mpg/cbs/methods/MgdmFastAtlasSegmentation2.java"
  "de/mpg/cbs/methods/MgdmFastScaledSegmentation2.java"
  "de/mpg/cbs/methods/MgdmFastSegmentation2.java"
  "de/mpg/cbs/methods/MgdmRepresentation.java"
  "de/mpg/cbs/methods/MinMaxFiltering.java"
  "de/mpg/cbs/methods/Mp2rageCortexGdm.java"
  "de/mpg/cbs/methods/ShapeAtlasClassification2.java"
  "de/mpg/cbs/methods/ShapeAtlasClassification.java"
  "de/mpg/cbs/methods/SimpleShapeAtlas2.java"
  "de/mpg/cbs/methods/SimpleShapeAtlas.java"
  "de/mpg/cbs/methods/SmoothGdm.java"
  "de/mpg/cbs/methods/SpatialImageDiffusion.java"
  "de/mpg/cbs/methods/StatisticalUncertaintyReduction.java"
  "de/mpg/cbs/methods/VolumetricLayeringGdm.java"

  "de/mpg/cbs/structures/BinaryHeap2D.java"
  "de/mpg/cbs/structures/BinaryHeap3D.java"
  "de/mpg/cbs/structures/BinaryHeapPair.java"
  "de/mpg/cbs/structures/BinaryTree.java"
  "de/mpg/cbs/structures/CriticalPointLUT.java"
  "de/mpg/cbs/structures/RotationMatrix.java"

  "de/mpg/cbs/utilities/BasicInfo.java"
  "de/mpg/cbs/utilities/ImageCropping.java"
  "de/mpg/cbs/utilities/Matrix3D.java"
  "de/mpg/cbs/utilities/Ngb.java"
  "de/mpg/cbs/utilities/Numerics.java"
)