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fix median scaling #324

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arlin opened this issue Jul 26, 2018 · 1 comment
Open
3 tasks

fix median scaling #324

arlin opened this issue Jul 26, 2018 · 1 comment
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@arlin
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arlin commented Jul 26, 2018

History. As per phylotastic/datelife#57 we were getting unexpected results including changes in topology. The reason is that the portal has been getting a scaled tree using the names in the input tree while discarding the input topology. We want to preserve the input topology.

  • determine how to invoke the DateLife median method so that it preserves the input topology
  • if the portal is using an intermediate phylotastic service that needs to be rewritten, do that
  • fix the portal so that it is invoking the service in a way that preserves the input topology.
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arlin commented Jul 26, 2018

@bomeara I'm assigning this to you first so that you can address the first issue above, how to invoke DateLife. Then we will re-assign this to @abusalehmdtayeen and @ducvan0212

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