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Quickstart materials for phenopype

This is the quickstart-vignette for phenopype: A phenotyping pipeline for Python, which reproduces the exemplary workflow shown in Figure 2 of (Lürig 2021):

Figure 2 (Lürig 2021)

Procedure

  1. Install phenopype: pip install phenopype

  2. Download this repository.

  3. Use the script quickstart.py to outline the bony armour plates of the stickleback specimen, either using the low-throughput or high-throughput routines.

  4. Check the tutorials and the phenopype gallery to learn how to construct effective image analysis workflows for your study system in phenopype.