ig.json

{
  "tool": "jekyll",
  "source": "implementationguide/phenopackets.xml",
  "npm-name": "ga4gh.fhir.phenopackets",
  "license": "CC0-1.0",
  "paths": {
    "qa": "generated_output/qa",
    "temp": "generated_output/temp",
    "output": "output",
    "txCache": "generated_output/txCache",
    "specification": "http://hl7.org/fhir/R4/",
    "pages": [
      "framework",
      "source/pages"
    ],
    "resources": [
      "source/resources"
    ]
  },
  "pages": [
    "pages"
  ],
  "sct-edition": "http://snomed.info/sct/900000000000207008",
  "canonicalBase": "http://ga4gh.org/fhir/phenopackets",
  "dependencyList": [
     {
        "name" : "GenomicsReporting",
        "package" : "hl7.fhir.uv.genomics-reporting",
        "version" : "current"
     }
   ],
  "defaults": {
    "StructureDefinition": {
      "template-mappings": "sd-mappings.html",
      "template-base": "sd.html",
      "template-defns": "sd-definitions.html"
    },
    "Patient": {
      "template-base": "ex.html"
    },
    "OperationDefinition": {
      "template-base": "base.html"
    },
    "CodeSystem": {
      "template-base": "base.html"
    },
    "Any": {
      "template-format": "format.html",
      "template-base": "base.html"
    },
    "ValueSet": {
      "template-base": "base.html"
    },
    "Observation": {
      "template-base": "ex.html"
    },
    "DocumentReference": {
      "template-base": "ex.html"
    },
    "FamilyHistory": {
      "template-base": "ex.html"
    },
    "Composition": {
      "template-base": "ex.html"
    }
  },
  "resources": {
    "CodeSystem/affected-status": {
      "base": "CodeSystem-affected-status.html",
      "defns": "CodeSystem-affected-status-definitions.html"
    },
    "CodeSystem/document-type": {
      "base": "CodeSystem-document-type.html",
      "defns": "CodeSystem-document-type-definitions.html"
    },
    "CodeSystem/hts-format": {
      "base": "CodeSystem-hts-format.html",
      "defns": "CodeSystem-hts-format-definitions.html"
    },
    "CodeSystem/karyotypic-sex": {
      "base": "CodeSystem-karyotypic-sex.html",
      "defns": "CodeSystem-karyotypic-sex-definitions.html"
    },
    "CodeSystem/section-type": {
      "base": "CodeSystem-section-type.html",
      "defns": "CodeSystem-section-type-definitions.html"
    },"StructureDefinition/anatomical-orientation": {
      "base": "StructureDefinition-anatomical-orientation.html",
      "defns": "StructureDefinition-anatomical-orientation-definitions.html"
    },
    "StructureDefinition/biosample-control": {
      "base": "StructureDefinition-biosample-control.html",
      "defns": "StructureDefinition-biosample-control-definitions.html"
    },
    "StructureDefinition/biosample-individual-age-at-collection": {
      "base": "StructureDefinition-biosample-individual-age-at-collection.html",
      "defns": "StructureDefinition-biosample-individual-age-at-collection-definitions.html"
    },
    "StructureDefinition/Biosample": {
      "base": "StructureDefinition-Biosample.html",
      "defns": "StructureDefinition-Biosample-definitions.html"
    },
    "StructureDefinition/CancerCondition": {
      "base": "StructureDefinition-CancerCondition.html",
      "defns": "StructureDefinition-CancerCondition-definitions.html"
    },
    "StructureDefinition/CancerStageGroup": {
      "base": "StructureDefinition-CancerStageGroup.html",
      "defns": "StructureDefinition-CancerStageGroup-definitions.html"
    },
    "StructureDefinition/code": {
      "base": "StructureDefinition-code.html",
      "defns": "StructureDefinition-code-definitions.html"
    },
    "StructureDefinition/Cohort": {
      "base": "StructureDefinition-Cohort.html",
      "defns": "StructureDefinition-Cohort-definitions.html"
    },
    "StructureDefinition/disease-onset": {
      "base": "StructureDefinition-disease-onset.html",
      "defns": "StructureDefinition-disease-onset-definitions.html"
    },
    "StructureDefinition/Disease": {
      "base": "StructureDefinition-Disease.html",
      "defns": "StructureDefinition-Disease-definitions.html"
    },
    "StructureDefinition/Encounter-Phenopackets": {
      "base": "StructureDefinition-Encounter-Phenopackets.html",
      "defns": "StructureDefinition-Encounter-Phenopackets-definitions.html"
    },
    "StructureDefinition/evidence": {
      "base": "StructureDefinition-evidence.html",
      "defns": "StructureDefinition-evidence-definitions.html"
    },
    "StructureDefinition/external-reference": {
      "base": "StructureDefinition-external-reference.html",
      "defns": "StructureDefinition-external-reference-definitions.html"
    },
    "StructureDefinition/Family": {
      "base": "StructureDefinition-Family.html",
      "defns": "StructureDefinition-Family-definitions.html"
    },
    "StructureDefinition/GenomicsReport": {
      "base": "StructureDefinition-GenomicsReport.html",
      "defns": "StructureDefinition-GenomicsReport-definitions.html"
    },
    "StructureDefinition/histology-morphology-behavior": {
      "base": "StructureDefinition-histology-morphology-behavior.html",
      "defns": "StructureDefinition-histology-morphology-behavior-definitions.html"
    },
    "StructureDefinition/htsfile-genome-assembly": {
      "base": "StructureDefinition-htsfile-genome-assembly.html",
      "defns": "StructureDefinition-htsfile-genome-assembly-definitions.html"
    },
    "StructureDefinition/HtsFile": {
      "base": "StructureDefinition-HtsFile.html",
      "defns": "StructureDefinition-HtsFile-definitions.html"
    },
    "StructureDefinition/htsfiles": {
      "base": "StructureDefinition-htsfiles.html",
      "defns": "StructureDefinition-htsfiles-definitions.html"
    },
    "StructureDefinition/individual-age": {
      "base": "StructureDefinition-individual-age.html",
      "defns": "StructureDefinition-individual-age-definitions.html"
    },
    "StructureDefinition/individual-karyotypic-sex": {
      "base": "StructureDefinition-individual-karyotypic-sex.html",
      "defns": "StructureDefinition-individual-karyotypic-sex-definitions.html"
    },
    "StructureDefinition/individual-taxonomy": {
      "base": "StructureDefinition-individual-taxonomy.html",
      "defns": "StructureDefinition-individual-taxonomy-definitions.html"
    },
    "StructureDefinition/Individual": {
      "base": "StructureDefinition-Individual.html",
      "defns": "StructureDefinition-Individual-definitions.html"
    },
    "StructureDefinition/landmark-location": {
      "base": "StructureDefinition-landmark-location.html",
      "defns": "StructureDefinition-landmark-location-definitions.html"
    },
    "StructureDefinition/landmark-to-body-location-direction": {
      "base": "StructureDefinition-landmark-to-body-location-direction.html",
      "defns": "StructureDefinition-landmark-to-body-location-direction-definitions.html"
    },
    "StructureDefinition/landmark-to-body-location-distance": {
      "base": "StructureDefinition-landmark-to-body-location-distance.html",
      "defns": "StructureDefinition-landmark-to-body-location-distance-definitions.html"
    },
    "StructureDefinition/landmark-type": {
      "base": "StructureDefinition-landmark-type.html",
      "defns": "StructureDefinition-landmark-type-definitions.html"
    },
    "StructureDefinition/laterality": {
      "base": "StructureDefinition-laterality.html",
      "defns": "StructureDefinition-laterality-definitions.html"
    },
    "StructureDefinition/pedigree-node-affected-status": {
      "base": "StructureDefinition-pedigree-node-affected-status.html",
      "defns": "StructureDefinition-pedigree-node-affected-status-definitions.html"
    },
    "StructureDefinition/pedigree-node-family-identifier": {
      "base": "StructureDefinition-pedigree-node-family-identifier.html",
      "defns": "StructureDefinition-pedigree-node-family-identifier-definitions.html"
    },
    "StructureDefinition/pedigree-node-individual": {
      "base": "StructureDefinition-pedigree-node-individual.html",
      "defns": "StructureDefinition-pedigree-node-individual-definitions.html"
    },
    "StructureDefinition/PedigreeNode": {
      "base": "StructureDefinition-PedigreeNode.html",
      "defns": "StructureDefinition-PedigreeNode-definitions.html"
    },
    "StructureDefinition/Phenopacket": {
      "base": "StructureDefinition-Phenopacket.html",
      "defns": "StructureDefinition-Phenopacket-definitions.html"
    },
    "StructureDefinition/phenotypic-feature-modifier": {
      "base": "StructureDefinition-phenotypic-feature-modifier.html",
      "defns": "StructureDefinition-phenotypic-feature-modifier-definitions.html"
    },
    "StructureDefinition/phenotypic-feature-onset": {
      "base": "StructureDefinition-phenotypic-feature-onset.html",
      "defns": "StructureDefinition-phenotypic-feature-onset-definitions.html"
    },
    "StructureDefinition/phenotypic-feature-severity": {
      "base": "StructureDefinition-phenotypic-feature-severity.html",
      "defns": "StructureDefinition-phenotypic-feature-severity-definitions.html"
    },
    "StructureDefinition/PhenotypicFeature": {
      "base": "StructureDefinition-PhenotypicFeature.html",
      "defns": "StructureDefinition-PhenotypicFeature-definitions.html"
    },
    "StructureDefinition/primary-cancer-condition": {
      "base": "StructureDefinition-primary-cancer-condition.html",
      "defns": "StructureDefinition-primary-cancer-condition-definitions.html"
    },
    "StructureDefinition/PrimaryCancerCondition": {
      "base": "StructureDefinition-PrimaryCancerCondition.html",
      "defns": "StructureDefinition-PrimaryCancerCondition-definitions.html"
    },
    "StructureDefinition/relation-to-landmark": {
      "base": "StructureDefinition-relation-to-landmark.html",
      "defns": "StructureDefinition-relation-to-landmark-definitions.html"
    },
    "StructureDefinition/SecondaryCancerCondition": {
      "base": "StructureDefinition-SecondaryCancerCondition.html",
      "defns": "StructureDefinition-SecondaryCancerCondition-definitions.html"
    },
    "StructureDefinition/TNMClinicalDistantMetastasesCategory": {
      "base": "StructureDefinition-TNMClinicalDistantMetastasesCategory.html",
      "defns": "StructureDefinition-TNMClinicalDistantMetastasesCategory-definitions.html"
    },
    "StructureDefinition/TNMClinicalPrimaryTumorCategory": {
      "base": "StructureDefinition-TNMClinicalPrimaryTumorCategory.html",
      "defns": "StructureDefinition-TNMClinicalPrimaryTumorCategory-definitions.html"
    },
    "StructureDefinition/TNMClinicalRegionalNodesCategory": {
      "base": "StructureDefinition-TNMClinicalRegionalNodesCategory.html",
      "defns": "StructureDefinition-TNMClinicalRegionalNodesCategory-definitions.html"
    },
    "StructureDefinition/TNMClinicalStageGroup": {
      "base": "StructureDefinition-TNMClinicalStageGroup.html",
      "defns": "StructureDefinition-TNMClinicalStageGroup-definitions.html"
    },
    "StructureDefinition/TNMPathologicDistantMetastasesCategory": {
      "base": "StructureDefinition-TNMPathologicDistantMetastasesCategory.html",
      "defns": "StructureDefinition-TNMPathologicDistantMetastasesCategory-definitions.html"
    },
    "StructureDefinition/TNMPathologicPrimaryTumorCategory": {
      "base": "StructureDefinition-TNMPathologicPrimaryTumorCategory.html",
      "defns": "StructureDefinition-TNMPathologicPrimaryTumorCategory-definitions.html"
    },
    "StructureDefinition/TNMPathologicRegionalNodesCategory": {
      "base": "StructureDefinition-TNMPathologicRegionalNodesCategory.html",
      "defns": "StructureDefinition-TNMPathologicRegionalNodesCategory-definitions.html"
    },
    "StructureDefinition/TNMPathologicStageGroup": {
      "base": "StructureDefinition-TNMPathologicStageGroup.html",
      "defns": "StructureDefinition-TNMPathologicStageGroup-definitions.html"
    },
    "ValueSet/anatomical-direction": {
      "base": "ValueSet-anatomical-direction.html",
      "defns": "ValueSet-anatomical-direction-definitions.html"
    },
    "ValueSet/anatomical-orientation": {
      "base": "ValueSet-anatomical-orientation.html",
      "defns": "ValueSet-anatomical-orientation-definitions.html"
    },
    "ValueSet/cancer-body-location": {
      "base": "ValueSet-cancer-body-location.html",
      "defns": "ValueSet-cancer-body-location-definitions.html"
    },
    "ValueSet/cancer-staging-system": {
      "base": "ValueSet-cancer-staging-system.html",
      "defns": "ValueSet-cancer-staging-system-definitions.html"
    },
    "ValueSet/evidence": {
      "base": "ValueSet-evidence.html",
      "defns": "ValueSet-evidence-definitions.html"
    },
    "ValueSet/histology-morphology-behavior": {
      "base": "ValueSet-histology-morphology-behavior.html",
      "defns": "ValueSet-histology-morphology-behavior-definitions.html"
    },
    "ValueSet/hts-format": {
      "base": "ValueSet-hts-format.html",
      "defns": "ValueSet-hts-format-definitions.html"
    },
    "ValueSet/karyotypic-sex": {
      "base": "ValueSet-karyotypic-sex.html",
      "defns": "ValueSet-karyotypic-sex-definitions.html"
    },
    "ValueSet/landmark-type": {
      "base": "ValueSet-landmark-type.html",
      "defns": "ValueSet-landmark-type-definitions.html"
    },
    "ValueSet/onset": {
      "base": "ValueSet-onset.html",
      "defns": "ValueSet-onset-definitions.html"
    },
    "ValueSet/pedigree-affected-status": {
      "base": "ValueSet-pedigree-affected-status.html",
      "defns": "ValueSet-pedigree-affected-status-definitions.html"
    },
    "ValueSet/phenotypic-feature-interpretation": {
      "base": "ValueSet-phenotypic-feature-interpretation.html",
      "defns": "ValueSet-phenotypic-feature-interpretation-definitions.html"
    },
    "ValueSet/phenotypic-feature-modifier": {
      "base": "ValueSet-phenotypic-feature-modifier.html",
      "defns": "ValueSet-phenotypic-feature-modifier-definitions.html"
    },
    "ValueSet/phenotypic-feature-severity": {
      "base": "ValueSet-phenotypic-feature-severity.html",
      "defns": "ValueSet-phenotypic-feature-severity-definitions.html"
    },
    "ValueSet/phenotypic-feature-type": {
      "base": "ValueSet-phenotypic-feature-type.html",
      "defns": "ValueSet-phenotypic-feature-type-definitions.html"
    },
    "ValueSet/primary-or-uncertain-behavior-cancer-disorder": {
      "base": "ValueSet-primary-or-uncertain-behavior-cancer-disorder.html",
      "defns": "ValueSet-primary-or-uncertain-behavior-cancer-disorder-definitions.html"
    },
    "ValueSet/secondary-cancer-disorder": {
      "base": "ValueSet-secondary-cancer-disorder.html",
      "defns": "ValueSet-secondary-cancer-disorder-definitions.html"
    },
    "ValueSet/taxonomy": {
      "base": "ValueSet-taxonomy.html",
      "defns": "ValueSet-taxonomy-definitions.html"
    },
    "ValueSet/tnm-distant-metastases-category": {
      "base": "ValueSet-tnm-distant-metastases-category.html",
      "defns": "ValueSet-tnm-distant-metastases-category-definitions.html"
    },
    "ValueSet/tnm-primary-tumor-category": {
      "base": "ValueSet-tnm-primary-tumor-category.html",
      "defns": "ValueSet-tnm-primary-tumor-category-definitions.html"
    },
    "ValueSet/tnm-regional-nodes-category": {
      "base": "ValueSet-tnm-regional-nodes-category.html",
      "defns": "ValueSet-tnm-regional-nodes-category-definitions.html"
    },
    "ValueSet/tnm-stage-group": {
      "base": "ValueSet-tnm-stage-group.html",
      "defns": "ValueSet-tnm-stage-group-definitions.html"
    },
    "ValueSet/units-of-length": {
      "base": "ValueSet-units-of-length.html",
      "defns": "ValueSet-units-of-length-definitions.html"
    }
  },
  "version": "4.0.0",
  "fixed-business-version": "0.1.0"
}