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Inferring translational heterogeneity from Saccharomyces cerevisiae ribosome profiling

Pedro do Couto Bordignon and Sebastian Pechmann
FEBS J 288, 4541 - 4559 (2021)
doi: 10.1111/febs.15748
PMID: 33539640

Contact: [email protected]
Web: www.pechmannlab.net
ORCID: https://orcid.org/0000-0002-4356-9470

Journal: https://febs.onlinelibrary.wiley.com/doi/full/10.1111/febs.15748
biorxiv: https://doi.org/10.1101/866582
Zenodo: http://doi.org/10.5281/zenodo.4472029

Description:

  • pipeline.py: processing of raw Ribo-seq sequencing data
  • figure1_funcs.py: analyses presented in Figure 1
  • figure2_funcs.py: analyses presented in Figure 2
  • figure3_funcs.py: analyses presented in Figure 3
  • figure4_funcs.py: analyses presented in Figure 4
  • figure5_funcs.py: analyses presented in Figure 5
  • figure6_funcs.py: analyses presented in Figure 6
  • peak_synchronization.py: utility functions to compute consensus ribosome density profiles
Update January 2021:

Supplementary Figure 1 is now Figure 2, the numbering of the other figures changes accordingly. Several figure panels from the supplementary figures have been integrated into the main figures.