From a88186835c1fee6fe37c0f62ad5dada5bd14deaa Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Tue, 29 Aug 2023 10:13:20 +0000 Subject: [PATCH] Bump mambaorg/micromamba from 1.4.3 to 1.5.0 in /containers Bumps mambaorg/micromamba from 1.4.3 to 1.5.0. --- updated-dependencies: - dependency-name: mambaorg/micromamba dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] --- containers/comparative-analysis__v1.0.0.Dockerfile | 2 +- containers/cooltools__v0.5.4.Dockerfile | 2 +- containers/dchic__vd4eb244.Dockerfile | 2 +- containers/diff-expression-analysis__v1.0.0.Dockerfile | 2 +- containers/diffdomain__v1c4b3db.Dockerfile | 2 +- containers/hic-breakfinder__v30a0dcc.Dockerfile | 4 ++-- containers/hicexplorer__v3.7.2.Dockerfile | 2 +- containers/hictrans__ve26ad6a.Dockerfile | 2 +- containers/hint__v2.2.8.Dockerfile | 2 +- containers/macs2__v2.2.9.1.Dockerfile | 2 +- containers/maxhic__vb553b8f.Dockerfile | 2 +- containers/microarray-analysis__v1.0.0.Dockerfile | 2 +- containers/plotting__v1.0.0.Dockerfile | 2 +- containers/pyutils__v1.0.0.Dockerfile | 2 +- containers/seqkit__v2.5.1.Dockerfile | 2 +- containers/wiggletools__v1.2.11.Dockerfile | 2 +- 16 files changed, 17 insertions(+), 17 deletions(-) diff --git a/containers/comparative-analysis__v1.0.0.Dockerfile b/containers/comparative-analysis__v1.0.0.Dockerfile index 7d2df1d..41133d6 100644 --- a/containers/comparative-analysis__v1.0.0.Dockerfile +++ b/containers/comparative-analysis__v1.0.0.Dockerfile @@ -2,7 +2,7 @@ # # SPDX-License-Identifier: MIT -FROM mambaorg/micromamba:1.4.3 AS base +FROM mambaorg/micromamba:1.5.0 AS base ARG CONTAINER_VERSION diff --git a/containers/cooltools__v0.5.4.Dockerfile b/containers/cooltools__v0.5.4.Dockerfile index 518c877..066a177 100644 --- a/containers/cooltools__v0.5.4.Dockerfile +++ b/containers/cooltools__v0.5.4.Dockerfile @@ -2,7 +2,7 @@ # # SPDX-License-Identifier: MIT -FROM mambaorg/micromamba:1.4.3 AS base +FROM mambaorg/micromamba:1.5.0 AS base ARG MAMBA_DOCKERFILE_ACTIVATE=1 diff --git a/containers/dchic__vd4eb244.Dockerfile b/containers/dchic__vd4eb244.Dockerfile index e6ffba9..cecd4e4 100644 --- a/containers/dchic__vd4eb244.Dockerfile +++ b/containers/dchic__vd4eb244.Dockerfile @@ -30,7 +30,7 @@ RUN apt-get update \ && chmod 755 dchic/dchicf.r -FROM mambaorg/micromamba:1.4.3 AS base +FROM mambaorg/micromamba:1.5.0 AS base ARG CONTAINER_VERSION diff --git a/containers/diff-expression-analysis__v1.0.0.Dockerfile b/containers/diff-expression-analysis__v1.0.0.Dockerfile index 68b604d..7242622 100644 --- a/containers/diff-expression-analysis__v1.0.0.Dockerfile +++ b/containers/diff-expression-analysis__v1.0.0.Dockerfile @@ -2,7 +2,7 @@ # # SPDX-License-Identifier: MIT -FROM mambaorg/micromamba:1.4.3 AS base +FROM mambaorg/micromamba:1.5.0 AS base ARG CONTAINER_VERSION diff --git a/containers/diffdomain__v1c4b3db.Dockerfile b/containers/diffdomain__v1c4b3db.Dockerfile index 03dc6a2..c40a559 100644 --- a/containers/diffdomain__v1c4b3db.Dockerfile +++ b/containers/diffdomain__v1c4b3db.Dockerfile @@ -19,7 +19,7 @@ RUN apt-get update \ && find diffdomain -type f -exec chmod uga+r {} + \ && find diffdomain -type d -exec chmod uga+rx {} + -FROM mambaorg/micromamba:1.4.3 AS base +FROM mambaorg/micromamba:1.5.0 AS base ARG MAMBA_DOCKERFILE_ACTIVATE=1 diff --git a/containers/hic-breakfinder__v30a0dcc.Dockerfile b/containers/hic-breakfinder__v30a0dcc.Dockerfile index 35de9db..b1583b5 100644 --- a/containers/hic-breakfinder__v30a0dcc.Dockerfile +++ b/containers/hic-breakfinder__v30a0dcc.Dockerfile @@ -2,7 +2,7 @@ # # SPDX-License-Identifier: MIT -FROM mambaorg/micromamba:1.4.3 AS builder +FROM mambaorg/micromamba:1.5.0 AS builder ARG CONTAINER_VERSION @@ -33,7 +33,7 @@ RUN cd hic_breakfinder \ && make -j $(nproc) -FROM mambaorg/micromamba:1.4.3 AS base +FROM mambaorg/micromamba:1.5.0 AS base ARG CONTAINER_VERSION diff --git a/containers/hicexplorer__v3.7.2.Dockerfile b/containers/hicexplorer__v3.7.2.Dockerfile index f055936..c01471c 100644 --- a/containers/hicexplorer__v3.7.2.Dockerfile +++ b/containers/hicexplorer__v3.7.2.Dockerfile @@ -2,7 +2,7 @@ # # SPDX-License-Identifier: MIT -FROM mambaorg/micromamba:1.4.3 AS base +FROM mambaorg/micromamba:1.5.0 AS base ARG MAMBA_DOCKERFILE_ACTIVATE=1 diff --git a/containers/hictrans__ve26ad6a.Dockerfile b/containers/hictrans__ve26ad6a.Dockerfile index de930ed..29728e1 100644 --- a/containers/hictrans__ve26ad6a.Dockerfile +++ b/containers/hictrans__ve26ad6a.Dockerfile @@ -15,7 +15,7 @@ RUN apt-get update \ && git checkout "$HICTRANS_VERSION" -FROM mambaorg/micromamba:1.4.3 AS base +FROM mambaorg/micromamba:1.5.0 AS base ARG CONTAINER_VERSION diff --git a/containers/hint__v2.2.8.Dockerfile b/containers/hint__v2.2.8.Dockerfile index c1dd057..edcbc07 100644 --- a/containers/hint__v2.2.8.Dockerfile +++ b/containers/hint__v2.2.8.Dockerfile @@ -12,7 +12,7 @@ RUN apt-get update \ && curl -L "$BICSEQ2_SEG_URL" | tar -xzf - -FROM mambaorg/micromamba:1.4.3 AS base +FROM mambaorg/micromamba:1.5.0 AS base ARG CONTAINER_VERSION diff --git a/containers/macs2__v2.2.9.1.Dockerfile b/containers/macs2__v2.2.9.1.Dockerfile index 4730889..5c8f3d6 100644 --- a/containers/macs2__v2.2.9.1.Dockerfile +++ b/containers/macs2__v2.2.9.1.Dockerfile @@ -2,7 +2,7 @@ # # SPDX-License-Identifier: MIT -FROM mambaorg/micromamba:1.4.3 AS base +FROM mambaorg/micromamba:1.5.0 AS base ARG CONTAINER_VERSION ARG MAMBA_DOCKERFILE_ACTIVATE=1 diff --git a/containers/maxhic__vb553b8f.Dockerfile b/containers/maxhic__vb553b8f.Dockerfile index 55bc283..c3dfb1b 100644 --- a/containers/maxhic__vb553b8f.Dockerfile +++ b/containers/maxhic__vb553b8f.Dockerfile @@ -21,7 +21,7 @@ RUN apt-get update \ RUN if [ -z "$CONTAINER_VERSION" ]; then echo "Missing CONTAINER_VERSION --build-arg" && exit 1; fi -FROM mambaorg/micromamba:1.4.3 AS base +FROM mambaorg/micromamba:1.5.0 AS base ARG MAMBA_DOCKERFILE_ACTIVATE=1 diff --git a/containers/microarray-analysis__v1.0.0.Dockerfile b/containers/microarray-analysis__v1.0.0.Dockerfile index 126b554..ee738b4 100644 --- a/containers/microarray-analysis__v1.0.0.Dockerfile +++ b/containers/microarray-analysis__v1.0.0.Dockerfile @@ -2,7 +2,7 @@ # # SPDX-License-Identifier: MIT -FROM mambaorg/micromamba:1.4.3 AS base +FROM mambaorg/micromamba:1.5.0 AS base ARG MAMBA_DOCKERFILE_ACTIVATE=1 diff --git a/containers/plotting__v1.0.0.Dockerfile b/containers/plotting__v1.0.0.Dockerfile index 6c3cbdc..287ba95 100644 --- a/containers/plotting__v1.0.0.Dockerfile +++ b/containers/plotting__v1.0.0.Dockerfile @@ -2,7 +2,7 @@ # # SPDX-License-Identifier: MIT -FROM mambaorg/micromamba:1.4.3 AS base +FROM mambaorg/micromamba:1.5.0 AS base ARG MAMBA_DOCKERFILE_ACTIVATE=1 diff --git a/containers/pyutils__v1.0.0.Dockerfile b/containers/pyutils__v1.0.0.Dockerfile index 32706f1..277df91 100644 --- a/containers/pyutils__v1.0.0.Dockerfile +++ b/containers/pyutils__v1.0.0.Dockerfile @@ -2,7 +2,7 @@ # # SPDX-License-Identifier: MIT -FROM mambaorg/micromamba:1.4.3 AS base +FROM mambaorg/micromamba:1.5.0 AS base ARG MAMBA_DOCKERFILE_ACTIVATE=1 diff --git a/containers/seqkit__v2.5.1.Dockerfile b/containers/seqkit__v2.5.1.Dockerfile index e606204..dcea283 100644 --- a/containers/seqkit__v2.5.1.Dockerfile +++ b/containers/seqkit__v2.5.1.Dockerfile @@ -2,7 +2,7 @@ # # SPDX-License-Identifier: MIT -FROM mambaorg/micromamba:1.4.3 AS base +FROM mambaorg/micromamba:1.5.0 AS base ARG CONTAINER_VERSION ARG MAMBA_DOCKERFILE_ACTIVATE=1 diff --git a/containers/wiggletools__v1.2.11.Dockerfile b/containers/wiggletools__v1.2.11.Dockerfile index 7aa00f6..7e7802f 100644 --- a/containers/wiggletools__v1.2.11.Dockerfile +++ b/containers/wiggletools__v1.2.11.Dockerfile @@ -2,7 +2,7 @@ # # SPDX-License-Identifier: MIT -FROM mambaorg/micromamba:1.4.3 AS base +FROM mambaorg/micromamba:1.5.0 AS base ARG CONTAINER_VERSION ARG MAMBA_DOCKERFILE_ACTIVATE=1