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1. OATML/EVE OATML/EVE Public

   Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Joint collaboration between the Marks lab and the OATML group.

   Python 60 54

2. OATML-Markslab/Tranception OATML-Markslab/Tranception Public

   Official repository for the paper "Tranception: Protein Fitness Prediction with Autoregressive Transformers and Inference-time Retrieval"

   Python 140 25

3. OATML-Markslab/ProteinGym OATML-Markslab/ProteinGym Public

   Official repository for the ProteinGym benchmarks

   HTML 241 25

4. OATML-Markslab/ProteinNPT OATML-Markslab/ProteinNPT Public

   Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"

   Python 86 8

5. OATML-Markslab/EVEscape OATML-Markslab/EVEscape Public

   Official repository for the paper "Learning from pre-pandemic data to forecast viral antibody escape"

   Python 48 9

6. uncertainty_guided_optimization uncertainty_guided_optimization Public

   Official repository for the paper "Improving black-box optimization in VAE latent space using decoder uncertainty" (Pascal Notin, José Miguel Hernández-Lobato, Yarin Gal)

   Python 29 5