From 801eaadf762614d0fee4e1f7062a24aa9abb28e9 Mon Sep 17 00:00:00 2001
From: ddomenico <domenicd@mskcc.org>
Date: Fri, 19 Jul 2024 13:40:35 -0400
Subject: [PATCH] =?UTF-8?q?=F0=9F=9B=A0=EF=B8=8F=20add=20hpc=5Fslurm=20pro?=
 =?UTF-8?q?file?=
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---
 nextflow.config | 22 +++++++++++++++++++++-
 1 file changed, 21 insertions(+), 1 deletion(-)

diff --git a/nextflow.config b/nextflow.config
index 6077dc5..8eeb2a5 100644
--- a/nextflow.config
+++ b/nextflow.config
@@ -23,13 +23,33 @@ profiles {
     standard {
         process.executor = 'local'
     }
-    hpc {
+
+    hpc_lsf {
         singularity.enabled = true
         singularity.autoMounts = true
         process {
             executor = 'lsf'
         }
     }
+
+    hpc_slurm {
+        singularity.enabled = true
+        singularity.autoMounts = true
+        process {
+            executor = 'slurm'
+            queue = 'componc_cpu'
+            withname:runPurple {
+                container = '/usersoftware/papaemme/isabl/local/purple/v0.1.0/purple_v0.1.0.sif'
+            }
+            withname:runAmber {
+                container = '/usersoftware/papaemme/isabl/local/purple/v0.1.0/purple_v0.1.0.sif'
+            }
+            withname:runCobalt {
+                container = '/usersoftware/papaemme/isabl/local/purple/v0.1.0/purple_v0.1.0.sif'
+            }
+        }
+    }
+
     cloud {
         docker {
           enabled = true