diff --git a/nextflow.config b/nextflow.config index 6077dc5..8eeb2a5 100644 --- a/nextflow.config +++ b/nextflow.config @@ -23,13 +23,33 @@ profiles { standard { process.executor = 'local' } - hpc { + + hpc_lsf { singularity.enabled = true singularity.autoMounts = true process { executor = 'lsf' } } + + hpc_slurm { + singularity.enabled = true + singularity.autoMounts = true + process { + executor = 'slurm' + queue = 'componc_cpu' + withname:runPurple { + container = '/usersoftware/papaemme/isabl/local/purple/v0.1.0/purple_v0.1.0.sif' + } + withname:runAmber { + container = '/usersoftware/papaemme/isabl/local/purple/v0.1.0/purple_v0.1.0.sif' + } + withname:runCobalt { + container = '/usersoftware/papaemme/isabl/local/purple/v0.1.0/purple_v0.1.0.sif' + } + } + } + cloud { docker { enabled = true