diff --git a/main.nf b/main.nf index 9660060..598e9a9 100644 --- a/main.nf +++ b/main.nf @@ -32,7 +32,7 @@ process runAmber { tag "AMBER on ${params.tumor}" publishDir "${params.outdir}/amber", mode: 'copy' cpus params.cores - memory '4 GB' + memory '32 GB' time '1h' input: @@ -60,7 +60,7 @@ process runCobalt { tag "COBALT on ${params.tumor}" publishDir "${params.outdir}/cobalt", mode: 'copy' cpus params.cores - memory '4 GB' + memory '32 GB' time '1h' input: @@ -87,7 +87,7 @@ process runPurple { tag "PURPLE on ${params.tumor}" publishDir "${params.outdir}/purple", mode: 'copy' cpus params.cores - memory '4 GB' + memory '32 GB' time '1h' input: diff --git a/nextflow.config b/nextflow.config index 8eeb2a5..93b8bf5 100644 --- a/nextflow.config +++ b/nextflow.config @@ -38,15 +38,6 @@ profiles { process { executor = 'slurm' queue = 'componc_cpu' - withname:runPurple { - container = '/usersoftware/papaemme/isabl/local/purple/v0.1.0/purple_v0.1.0.sif' - } - withname:runAmber { - container = '/usersoftware/papaemme/isabl/local/purple/v0.1.0/purple_v0.1.0.sif' - } - withname:runCobalt { - container = '/usersoftware/papaemme/isabl/local/purple/v0.1.0/purple_v0.1.0.sif' - } } }