-
Notifications
You must be signed in to change notification settings - Fork 4
/
overview.html
148 lines (138 loc) · 8.91 KB
/
overview.html
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
<html xmlns="http://www.w3.org/1999/xhtml">
<head>
<title>Domeo - The Annotation Toolkit - Overview</title>
<meta name="author" content="Paolo Ciccarese" />
<meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
<link rel="SHORTCUT ICON" href="images/domeo.ico">
<link href="css/style.css" rel="stylesheet" type="text/css" />
<link rel="stylesheet" type="text/css" href="css/coin-slider.css" />
<script type="text/javascript" src="js/cufon-yui.js"></script>
<script type="text/javascript" src="js/cufon-chunkfive.js"></script>
<script type="text/javascript" src="js/jquery-1.4.2.min.js"></script>
<script type="text/javascript" src="js/script.js"></script>
<script type="text/javascript" src="js/coin-slider.min.js"></script>
<script type="text/javascript">
var _gaq = _gaq || [];
_gaq.push(['_setAccount', 'UA-27711736-1']);
_gaq.push(['_trackPageview']);
(function() {
var ga = document.createElement('script'); ga.type = 'text/javascript'; ga.async = true;
ga.src = ('https:' == document.location.protocol ? 'https://ssl' : 'http://www') + '.google-analytics.com/ga.js';
var s = document.getElementsByTagName('script')[0]; s.parentNode.insertBefore(ga, s);
})();
</script>
</head>
<body>
<div class="main">
<div class="header">
<div class="header_resize">
<div class="logo">
<h1><a href="index.html">DOMEO<img src="images/new-logo.png" width="82" height="65" alt="Domeo Toolkit " /><small>Annotation ToolKIT</small></a></h1>
</div>
<div class="menu_nav">
<ul>
<li><a href="index.html"><span>Home</span></a></li>
<li><a href="news.html"><span>News</span></a></li>
<li class="active"><a href="overview.html"><span>Overview</span></a></li>
<li><a href="v2.html"><span>V. 2</span><br/><img src="images/label_new_yellow.png" width="58" height="64" /></a></li>
<li><a href="resources.html"><span>Resources</span></a></li>
<li><a href="about.html"><span>About</span></a></li>
</ul>
</div>
<div class="clr"></div>
<div style="border-bottom: 0px solid #CC3300">
<div id="coin-slider"> <a href="#"><img src="images/_slide1_1.jpg" width="960" height="260" alt="" /></a> <a href="#"><img src="images/_slide2.jpg" width="960" height="260" alt="" /></a> <a href="#"><img src="images/_slide3.jpg" width="960" height="260" alt="" /></a>
<br/>
</div>
<div class="clr"></div>
</div>
<div class="clr"></div>
</div>
</div>
<div class="content">
<div class="content_resize">
<div class="mainbar">
<div class="article">
<h2>Domeo Overview</h2>
<p style="text-align:justify;"><strong>Domeo</strong> is an
extensible web application enabling users to visually and
efficiently create and share ontology-based stand-off annotation
on HTML or XML document targets. The tool supports
manual, fully automated, and semi-automated annotation
with complete provenance records, as well as personal or
community annotation with access authorization and control.</p>
<div class="post_contents">
<h3>Domeo v.2 alpha</h3>
<p>The most recent version of domeo is the v.2 Alpha. This is the result of the experience matured with v.1 and incorporates the valuable feedback of our collaborators. </p>
</div>
<div class="post_contents">
<h3>Domeo, Annotation Ontology and the W3C Community Group</h3>
<p align="justify">Since v.1 Domeo promotes annotation sharing through the <a href="http://code.google.com/p/annotation-ontology/" target="_blank">Annotation Ontology (AO)</a> [<a href="http://www.jbiomedsem.com/content/2/S2/S4" target="_blank">Ciccarese et al.</a>] RDF model. We are also active members of the <a href="http://www.w3.org/community/openannotation/" target="_blank">W3C Open Annotation Community Group</a> and we expect Domeo v.2 to export annotation in Open Annotation format very soon.</p>
</div>
<div class="post_contents">
<p>AO is an OWL ontology providing a model for creating ‘stand-off’ annotation anchored to online resources such as documents, images and databases and their fragments. AO provides a robust set of methods for linking online resources, for example text in scientific publications, to ontological elements, with full representation of the annotation provenance. Through AO, existing domain ontologies and vocabularies – in OWL or SKOS - can be utilized, out of the box, for creating extremely rich stores of metadata on web resources. In the bio-medical field, subjects for ontological structuring include biological processes, molecular functions, anatomical and cellular structures, tissue and cell types, chemical compounds, and biological entities such as genes and proteins. However, AO is not limited to the bio-medical domain and can be easily used in other scientific and non-scientific contexts</p>
</div>
<div class="clr"></div>
</div>
</div>
<div class="sidebar">
<div class="clr"></div>
<div class="gadget">
<h2 class="star"><span>Funding</span></h2>
<div class="clr"></div>
Domeo has been made possible by generous support from:
<ul class="ex_menu">
<li><a href="http://www.lilly.com/Pages/home.aspx" target="_blank">Eli Lilly and Company</a></li>
<li><a href="http://www.nih.gov/" target="_blank">NIH</a> via subcontract with <a href="http://www.neuinfo.org/" target="_blank"> Neuroscience Information Framework (NIF)</a>, and </li>
<li><a href="http://www.elsevier.com/" target="_blank">Elsevier B.V.</a> </li>
</ul>
</div>
</div>
<div class="clr"></div>
</div>
</div>
<div class="fbg">
<div class="fbg_resize">
<div class="col c1">
<h2>Testimonials</h2>
<table width="270" border="0">
<tr>
<td width="95"><img src="http://www.neuroinformatics2010.org/speakers/maryann-martone/image_mini" width="83" height="102"/></td>
<td width="195" valign="top"> <strong><a href="http://ncmir.ucsd.edu/contact/personnel/maryann_martone.shtm" target="_blank">Dr. Maryann Martone</a></strong> Co-principal investigator of the Neuroscience Information Framework</td>
</tr>
</table>
<p>"<em>We are pleased to announce that annotation of literature using Domeo will be made available through Neuroscience Information Framework in our next release. We believe that Domeo is a great way for the community to help make NIF better by annotating content in a way that makes it easier to find. We will be launching a project to annotate antibodies used within the neuroscience literature using Domeo</em>".</p>
</div>
<div class="col c2">
<h2>Become a User</h2>
<p>If you are interested in collaborating with us as a alpha tester, or you simply want to have access to the latest version of Domeo, please <a href="mailto:[email protected]">contact us</a>. </p>
<h2><span>Become a Developer</span></h2>
<img src="images/domeo-code.png" alt="Domeo Code by Paolo Ciccarese" width="262" height="101" />
<p>We are looking for knowledgeable and energetic collaborators with great ideas. <br/>
To become a developer of the open source Domeo Web Annotation Toolkit, please <a href="mailto:[email protected]">contact us</a>.</p>
</div>
<div class="col c3">
<h2>Funding</h2>
<div><a href="http://www.lilly.com/Pages/home.aspx" target="_blank" style="text-decoration:none">Eli Lilly and Company</a></div><br/>
<div align="center"><a href="http://www.lilly.com/" target="_blank" style="text-decoration:none"><img src="images/logos/lilly-logo.jpg" width="189" height="117"/></a></div><br/>
<div><a href="http://www.nih.gov/" target="_blank" style="text-decoration:none">NIH</a> via subcontract with <a href="http://www.neuinfo.org/" target="_blank" style="text-decoration:none"> Neuroscience Information Framework (NIF)</a></div>
<div align="center"><a href="http://www.neuinfo.org/" target="_blank"><img src="images/logos/nif-logo.png" width="190" height="124"/></a></div><br/>
<div>and <a href="http://www.elsevier.com/" target="_blank" style="text-decoration:none">Elsevier B.V.</a> </div>
<br/>
</div>
<div class="clr"></div>
<div align="center" style="background-color:#fff; padding-left: 5px; padding-top: 8px;padding-bottom: 5px;">
<img src="images/logos/MGHlogo.jpg" width="260" alt="Mass General Logo" /></div>
</div>
</div>
</div>
<div class="footer">
<div class="footer_resize">
<p class="lf">©2014 Copyright <a href="http://www.massgeneral.org/">Massachusetts General Hospital</a></p>
<div style="clear:both;"></div>
</div>
</div>
</div>
</body>
</html>