From 8ad1247a3e96c7503a5c592ba88d4cfb9a3fb015 Mon Sep 17 00:00:00 2001 From: Pablo RF Date: Sun, 24 Nov 2024 11:59:49 -0500 Subject: [PATCH] trying to recover the modellist --- src/mitim_modules/portals/PORTALStools.py | 38 ++++++++++++--------- src/mitim_tools/opt_tools/BOTORCHtools.py | 16 ++++----- src/mitim_tools/opt_tools/STEPtools.py | 2 +- src/mitim_tools/opt_tools/SURROGATEtools.py | 22 ++++++------ tests/PORTALS_workflow.py | 2 +- 5 files changed, 43 insertions(+), 37 deletions(-) diff --git a/src/mitim_modules/portals/PORTALStools.py b/src/mitim_modules/portals/PORTALStools.py index 70ecce0a..52662332 100644 --- a/src/mitim_modules/portals/PORTALStools.py +++ b/src/mitim_modules/portals/PORTALStools.py @@ -25,22 +25,28 @@ def selectSurrogates(outputs, surrogateOptions, CGYROrun=False): surrogateOptions_dict = {} - # Turbulent and Neoclassical - - surrogateOptions_dict[iTra] = copy.deepcopy(surrogateOptions) - surrogateOptions_dict[iTra]["TypeMean"] = 2 # Linear in gradients, constant in rest - surrogateOptions_dict[iTra]["TypeKernel"] = 1 # RBF - # surrogateOptions_dict[len(output)]['ExtraNoise'] = True - - surrogateOptions_dict[iTar] = copy.deepcopy(surrogateOptions) - surrogateOptions_dict[iTar]["TypeMean"] = 2 # Linear in gradients, constant in rest - surrogateOptions_dict[iTar]["TypeKernel"] = 1 # RBF - # surrogateOptions_dict[len(output)]['ExtraNoise'] = True - - # Targets (If it's a target, just linear) - surrogateOptions_dict[len(outputs)] = copy.deepcopy(surrogateOptions) - surrogateOptions_dict[len(outputs)]["TypeMean"] = 1 - surrogateOptions_dict[len(outputs)]["TypeKernel"] = 2 # Constant kernel + for i in range(len(outputs)): + # Turbulent and Neoclassical at inner locations + surrogateOptions_dict[i+1] = copy.deepcopy(surrogateOptions) + surrogateOptions_dict[i+1]["TypeMean"] = 1 # Linear + surrogateOptions_dict[i+1]["TypeKernel"] = 1 # RBF + + + + # # Turbulent and Neoclassical at inner locations + # surrogateOptions_dict[iTra] = copy.deepcopy(surrogateOptions) + # surrogateOptions_dict[iTra]["TypeMean"] = 1 # Linear + # surrogateOptions_dict[iTra]["TypeKernel"] = 1 # RBF + + # # Turbulent and Neoclassical at outer location (generally less variables) + # surrogateOptions_dict[iTar] = copy.deepcopy(surrogateOptions) + # surrogateOptions_dict[iTar]["TypeMean"] = 1 # Linear + # surrogateOptions_dict[iTar]["TypeKernel"] = 1 # RBF + + # # Targets (If it's a target, just linear) + # surrogateOptions_dict[len(outputs)] = copy.deepcopy(surrogateOptions) + # surrogateOptions_dict[len(outputs)]["TypeMean"] = 1 # Linear + # surrogateOptions_dict[len(outputs)]["TypeKernel"] = 2 # Constant kernel return surrogateOptions_dict diff --git a/src/mitim_tools/opt_tools/BOTORCHtools.py b/src/mitim_tools/opt_tools/BOTORCHtools.py index db79b4ce..2a982ed2 100644 --- a/src/mitim_tools/opt_tools/BOTORCHtools.py +++ b/src/mitim_tools/opt_tools/BOTORCHtools.py @@ -40,7 +40,7 @@ def __init__( input_transform=None, outcome_transform=None, surrogateOptions={}, - variables=None, + #variables=None, train_X_added=torch.Tensor([]), train_Y_added=torch.Tensor([]), train_Yvar_added=torch.Tensor([]), @@ -214,12 +214,12 @@ def __init__( elif TypeMean == 1: self.mean_module = gpytorch.means.linear_mean.LinearMean( self.ard_num_dims, batch_shape=self._aug_batch_shape, bias=True ) - elif TypeMean == 2: - self.mean_module = MITIM_LinearMeanGradients( - batch_shape=self._aug_batch_shape, variables=variables ) - elif TypeMean == 3: - self.mean_module = MITIM_CriticalGradient( - batch_shape=self._aug_batch_shape, variables=variables ) + # elif TypeMean == 2: + # self.mean_module = MITIM_LinearMeanGradients( + # batch_shape=self._aug_batch_shape, variables=variables ) + # elif TypeMean == 3: + # self.mean_module = MITIM_CriticalGradient( + # batch_shape=self._aug_batch_shape, variables=variables ) """ ----------------------------------------------------------------------- @@ -890,7 +890,7 @@ class MITIM_LinearMeanGradients(gpytorch.means.mean.Mean): def __init__(self, batch_shape=torch.Size(), variables=None, **kwargs): super().__init__() - # Indeces of variables that are gradient, so subject to CG behavior + # Indeces of variables that are gradient, so subject to critical gradient behavior grad_vector = [] if variables is not None: for i, variable in enumerate(variables): diff --git a/src/mitim_tools/opt_tools/STEPtools.py b/src/mitim_tools/opt_tools/STEPtools.py index 4f494a62..77a0f67d 100644 --- a/src/mitim_tools/opt_tools/STEPtools.py +++ b/src/mitim_tools/opt_tools/STEPtools.py @@ -103,7 +103,7 @@ def fit_step(self, avoidPoints=None, fit_output_contains=None): def _fit_multioutput_model(self): # Base model - self.GP["mo_model"] = SURROGATEtools.surrogate_model.simple( + self.GP["mo_model"] = SURROGATEtools.surrogate_model.only_define( self.x, self.y, self.yvar, diff --git a/src/mitim_tools/opt_tools/SURROGATEtools.py b/src/mitim_tools/opt_tools/SURROGATEtools.py index 9f94f805..6679c8da 100644 --- a/src/mitim_tools/opt_tools/SURROGATEtools.py +++ b/src/mitim_tools/opt_tools/SURROGATEtools.py @@ -27,7 +27,7 @@ class surrogate_model: """ @classmethod - def simple(cls, *args, **kwargs): + def only_define(cls, *args, **kwargs): # Create an instance of the class instance = cls.__new__(cls) # Initialize the parameters manually @@ -202,15 +202,15 @@ def __init__( self.normalization_pass(input_transform, outcome_transform) - self.variables = ( - self.surrogate_transformation_variables[self.outputs[0]] - if ( - (self.outputs is not None) - and ("surrogate_transformation_variables" in self.__dict__) - and (self.surrogate_transformation_variables is not None) - ) - else None - ) + # self.variables = ( + # self.surrogate_transformation_variables[self.outputs[0]] + # if ( + # (self.outputs is not None) + # and ("surrogate_transformation_variables" in self.__dict__) + # and (self.surrogate_transformation_variables is not None) + # ) + # else None + # ) # ************************************************************************************* # Model @@ -225,7 +225,7 @@ def __init__( input_transform=input_transform, outcome_transform=outcome_transform, surrogateOptions=self.surrogateOptions, - variables=self.variables, + #variables=self.variables, train_X_added=self.train_X_added, train_Y_added=self.train_Y_added, train_Yvar_added=self.train_Yvar_added, diff --git a/tests/PORTALS_workflow.py b/tests/PORTALS_workflow.py index e4ac0ba4..92c37990 100644 --- a/tests/PORTALS_workflow.py +++ b/tests/PORTALS_workflow.py @@ -24,7 +24,7 @@ # Initialize class portals_fun = PORTALSmain.portals(folderWork) -portals_fun.optimization_options["BO_iterations"] = 1 +portals_fun.optimization_options["BO_iterations"] = 5 portals_fun.optimization_options["initial_training"] = 3 portals_fun.MODELparameters["RhoLocations"] = [0.25, 0.45, 0.65, 0.85] portals_fun.INITparameters["removeFast"] = True