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@us-amlr U.S. Antarctic Marine Living Resources Program

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    23 repositories

    • amlrgos

      Public
      Code for processing Argos data
      R
      •
      Other
      •0•0•0•0•Updated Nov 9, 2024Nov 9, 2024

    • .github

      Public
      0•0•0•0•Updated Oct 3, 2024Oct 3, 2024

    • viame-web-noaa-gcp

      Public
      Deploy an instance of VIAME-Web in GCP in the NOAA Fisheries Cloud
      Shell
      •
      Other
      •1•0•0•0•Updated Oct 3, 2024Oct 3, 2024

    • tamatoamlr

      Public
      R package with associated Shiny app for analyzing and visualizing data from the AERD Pinniped Research Program
      R
      •
      Apache License 2.0
      •2•0•6•0•Updated Oct 1, 2024Oct 1, 2024

    • shade

      Public
      Shiny shadow fixer (shade): R Shiny app for fixing exported VIAME predictions
      R
      •
      Apache License 2.0
      •0•0•0•0•Updated Sep 24, 2024Sep 24, 2024

    • cs-phoc

      Public
      Repository for CS-PHOC dataset and data paper
      R
      •
      Creative Commons Zero v1.0 Universal
      •0•0•0•0•Updated Sep 14, 2024Sep 14, 2024

    • amlr-gliders

      Public archive
      Scripts used to process AMLR glider data in GCP
      Jupyter Notebook
      •
      Other
      •0•1•2•0•Updated Aug 19, 2024Aug 19, 2024

    • cs-diets

      Public
      Import and Process US AMLR Cape Shirreff Pinniped Diet Data
      R
      •
      Creative Commons Zero v1.0 Universal
      •1•0•0•0•Updated Aug 13, 2024Aug 13, 2024

    • ssafs-pup-census

      Public
      South Shetland Antarctic fur seal (SSAFS) total synoptic pup counts
      R
      •
      Creative Commons Zero v1.0 Universal
      •0•0•1•0•Updated Jul 3, 2024Jul 3, 2024

    • photoR

      Public
      R Shiny app for estimating phenology and reproductive success from annotated time lapse image data
      R
      •
      Other
      •1•0•0•0•Updated Jun 20, 2024Jun 20, 2024

    • USAMLR-krill-length-frequencies

      Public
      Antarctic krill length frequencies
      0•0•0•0•Updated May 9, 2024May 9, 2024

    • Threshold-MSER

      Public
      In situ plankton segmentation program.
      C++
      •
      GNU General Public License v2.0
      •4•0•0•0•Updated Apr 8, 2024Apr 8, 2024

    • amlrDatabases

      Public
      A collection of functions, especially for Shiny apps connected to AMLR databases, used by other AMLR packages
      R
      •0•0•1•0•Updated Mar 8, 2024Mar 8, 2024

    • vvipr

      Public
      Verify VIAME Predictions (vvipr) - An R Shiny app to quickly assess performance of image classification model predictions against a set of truth annotations.
      R
      •
      Other
      •1•2•2•0•Updated Oct 23, 2023Oct 23, 2023

    • Casal2-krill-model-diet_lfs

      Public
      Added krill length-frequencies from penguin diets years 1977-2020 to model described in 'Casal-krill-model-mcmc
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Sep 29, 2023Sep 29, 2023

    • Casal2-krill-model

      Public
      Casal2 krill model example for Antarctic krill in the combined U.S. AMLR strata in CCAMLR Subarea 48.1
      0•0•0•0•Updated Sep 29, 2023Sep 29, 2023

    • Casal2-krill-model-mcmc

      Public
      MCMC analysis using Casal2 of krill spawning stock biomass and CCAMLR decision rules
      Roff
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Sep 29, 2023Sep 29, 2023

    • krill-proportional-recruitment

      Public
      Proportional recruitment in Antarctic krill: data and calculations
      R
      •0•0•0•0•Updated Sep 27, 2023Sep 27, 2023

    • glider-simulation

      Public
      Simulated underwater glider sampling for Antarctic krill
      R
      •1•0•0•0•Updated Jan 3, 2023Jan 3, 2023

    • ADMB-krill-spawner-recruit

      Public
      ADMB and R code used in Kinzey et al., 2019
      Smarty
      •1•0•0•0•Updated Feb 11, 2022Feb 11, 2022

    • ADMB-mcmc

      Public
      Example MCMC using ADMB code and krill data from Kinzey et al., 2018
      Smarty
      •1•0•0•0•Updated Feb 11, 2022Feb 11, 2022

    • F3B

      Public
      A model to evaluate krill fishery management strategies
      R
      •
      Other
      •0•0•0•0•Updated Jun 29, 2021Jun 29, 2021

    • amlrOceo

      Public
      amlrOceo and its accompanying Shiny app are for analyzing and visualizing data collected by the AERD Krill and Oceanographic Research Program.
      R
      •0•0•0•0•Updated Jun 28, 2021Jun 28, 2021