Repositories list

• smk_sv

  Public
  A snakemake pipeline to call structure variants from ONT data

  bioinformaticsbioinformatics-pipelinestructural-variations+ 4structural-variantslong-read-sequencingstructural-variation-callingoxford-nanopore-sequencing

  Python

  •0•2•0•0•Updated Nov 26, 2024Nov 26, 2024

• gghic

  Public
  gghic

  ggplot2rhic+ 2genomics-visualizationgenomic-interactions

  R

  •

  GNU General Public License v3.0

  •0•1•1•0•Updated Nov 25, 2024Nov 25, 2024

• HKU-Practical-Bioinformatics

  Public
  HTML

  •0•1•0•0•Updated Nov 14, 2024Nov 14, 2024

• LocusMasterTE_paper

  Public
  Scripts for figures and results in LocusMasterTE paper

  R

  •0•0•0•0•Updated Aug 5, 2024Aug 5, 2024

• ERCC2

  Public
  Scripts for Barbour et al. ERCC2 mutations alter the genomic distribution pattern of somatic mutations and are independently prognostic in bladder cancer

  HTML

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Jul 7, 2024Jul 7, 2024

• withings_api_dev

  Public
  Template for flask application to access Withings API

  Python

  •0•0•0•1•Updated May 21, 2024May 21, 2024

• GenomicsWorkshop

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Feb 28, 2024Feb 28, 2024

• LocusMasterTE

  Public
  Integrating long read sequencing enhances short read-based locus-specific transposable element quantification

  Python

  •0•3•1•0•Updated Jan 24, 2024Jan 24, 2024

• HKU_STEM

  Public
  HKU STEM Data Science Lab for SARS-CoV2 bioinformatics

  Jupyter Notebook

  •0•0•0•0•Updated Jul 22, 2023Jul 22, 2023

• genomics-exercise

  Public
  Genomics exercise from Jason Wong lab @ HKU

  MIT License

  •2•0•0•0•Updated Oct 14, 2022Oct 14, 2022

• TMB

  Public
  Tumour mutation burden correction

  MIT License

  •1•2•0•1•Updated Oct 14, 2022Oct 14, 2022

• cBioportalDataClawler

  Public
  Some simple Python scripts to download data files from https://www.cbioportal.org/

  Python

  •

  MIT License

  •0•0•0•0•Updated Jan 4, 2022Jan 4, 2022

• RNAseq-analysis-pipeline

  Public
  This guidebook aims to demonstrate the RNA-seq analysis pipeline and the basics statistical analysis behind Differential Gene expression detection

  Jupyter Notebook

  •2•1•0•0•Updated Jun 9, 2021Jun 9, 2021

• MMR

  Public
  R

  •1•0•0•0•Updated Oct 9, 2020Oct 9, 2020