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    26 repositories

    • ngs-bits

      Public
      Short-read sequencing tools
      C++
      •
      MIT License
      •32•150•28•0•Updated Dec 28, 2024Dec 28, 2024

    • megSAP

      Public
      a Medical Genetics Sequence Analysis Pipeline
      PHP
      •
      GNU General Public License v3.0
      •21•79•41•0•Updated Dec 27, 2024Dec 27, 2024

    • ClinCNV

      Public
      Detection of copy number changes in Germline/Trio/Somatic contexts in NGS data
      copy-number-variationbioinformatics-algorithmsbioinformatics-tool
      R
      •
      MIT License
      •2•79•8•0•Updated Dec 17, 2024Dec 17, 2024

    • umiVar

      Public
      Code-refactoring of umiVar tool.
      Python
      •
      MIT License
      •0•1•9•0•Updated Dec 4, 2024Dec 4, 2024

    • bioconda-recipes

      Public
      Conda recipes for the bioconda channel.
      Shell
      •
      MIT License
      •3.3k•0•0•0•Updated Nov 26, 2024Nov 26, 2024

    • megLR

      Public
      Snakemake workflow for comprehensive ONT analysis
      Python
      •2•3•2•0•Updated Nov 8, 2024Nov 8, 2024

    • Webservice_UploadBRCA2006

      Public
      Upload to HerediCare/BRCA2006 database
      PHP
      •0•0•0•0•Updated Nov 8, 2024Nov 8, 2024

    • aiDIVA

      Public
      Pathogenicity prediction and prioritization of genetic variants.
      Python
      •
      MIT License
      •2•4•0•0•Updated Oct 30, 2024Oct 30, 2024

    • PET_LIT_study

      Public
      Python
      •0•0•0•0•Updated Sep 17, 2024Sep 17, 2024

    • StraglrOn

      Public
      Straglr Addon von Thomas Braun
      Python
      •0•1•1•0•Updated Sep 9, 2024Sep 9, 2024

    • expression-analysis-smk

      Public
      Robust reproducible differential expression analysis based on edgeR with components in R and Python as a snakemake pipeline
      Jupyter Notebook
      •0•0•1•0•Updated Jul 16, 2024Jul 16, 2024

    • plasmIDent

      Public
      Nextflow
      •
      MIT License
      •5•15•2•2•Updated Jun 27, 2024Jun 27, 2024

    • sca4_project

      Public
      HTML
      •0•0•0•0•Updated Apr 11, 2024Apr 11, 2024

    • MultiQC

      Public
      IMGAG Fork, using custom modules
      JavaScript
      •
      GNU General Public License v3.0
      •607•0•1•0•Updated Mar 4, 2024Mar 4, 2024

    • IGV_genome_ensembl

      Public archive
      A IGV reference genome annotated with Ensembl gene/transcript info
      Python
      •
      MIT License
      •1•2•0•0•Updated Feb 19, 2024Feb 19, 2024

    • aiDIVA-Training

      Public
      Python
      •
      MIT License
      •0•1•0•0•Updated Dec 11, 2023Dec 11, 2023

    • umiVar_legacy

      Public
      cfDNA variant caller as implemented by Fran
      Python
      •0•1•0•0•Updated Sep 27, 2023Sep 27, 2023

    • scarHRD

      Public
      Fork of scarHRD to fix bugs.
      HTML
      •
      MIT License
      •53•0•0•0•Updated Aug 1, 2023Aug 1, 2023

    • COVID-19

      Public
      Python
      •0•0•0•0•Updated Jul 31, 2023Jul 31, 2023

    • aiDIVA-Simulation

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Jun 21, 2023Jun 21, 2023

    • htslib

      Public
      C library for high-throughput sequencing data formats
      C
      •
      Other
      •443•0•0•0•Updated Feb 28, 2022Feb 28, 2022

    • MultiQC_TestData

      Public
      Test data for MultiQC. See https://github.com/ewels/MultiQC
      HTML
      •
      MIT License
      •146•0•0•0•Updated Sep 17, 2021Sep 17, 2021

    • c.ATG_Documentation

      Public
      0•0•0•0•Updated Apr 16, 2021Apr 16, 2021

    • pedigreejs

      Public
      A web tool for building pedigrees, https://ccge-boadicea.github.io/pedigreejs/
      JavaScript
      •
      GNU General Public License v3.0
      •43•0•0•0•Updated Nov 24, 2020Nov 24, 2020

    • RFC1_repeat_screening

      Public
      Screening tool for RFC1/CANVAS repeat in WES samples.
      PHP
      •
      MIT License
      •0•0•0•0•Updated Sep 1, 2020Sep 1, 2020

    • NGS_data_exchange

      Public archive
      Data formats for NGS data exchange.
      MIT License
      •0•0•0•0•Updated May 20, 2019May 20, 2019