Harvard Medical School - Department of Biomedical Informatics

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361 repositories

i2b2v2-webclient
Public
JavaScript
•4•2•1•1•Updated Dec 2, 2024Dec 2, 2024
service-workbench-on-aws
Public
A platform that provides researchers with one-click access to collaborative workspace environments operating across teams, universities, and datasets while enabling university IT stakeholders to manage, monitor, and control spending, apply security best practices, and comply with corporate governance.
JavaScript
•
Apache License 2.0
•119•7•0•2•Updated Dec 2, 2024Dec 2, 2024
cellpop
Public
TypeScript
•
MIT License
•1•0•11•2•Updated Dec 2, 2024Dec 2, 2024
pic-sure-all-in-one
Public
Shell
•
Apache License 2.0
•12•4•0•2•Updated Dec 2, 2024Dec 2, 2024
pic-sure-bdc-release-control
Public
Apache License 2.0
•8•1•0•0•Updated Dec 2, 2024Dec 2, 2024
picsure-dictionary
Public
Java
•
Apache License 2.0
•1•0•0•0•Updated Dec 2, 2024Dec 2, 2024
pic-sure-public-datasets
Public
Public datasets available for PIC-SURE
Apache License 2.0
•0•0•0•0•Updated Dec 2, 2024Dec 2, 2024
pic-sure-baseline-release-control
Public
5•0•0•0•Updated Dec 2, 2024Dec 2, 2024
biodata_catalyst_stigmatizing_variables
Public
Jupyter Notebook
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Apache License 2.0
•0•1•0•2•Updated Dec 2, 2024Dec 2, 2024
hypatio-app
Public
Python
•0•4•0•8•Updated Dec 2, 2024Dec 2, 2024
dbmi-fileservice
Public
Python
•0•2•0•4•Updated Dec 2, 2024Dec 2, 2024
fhirquestionnaire
Public
HTML
•0•2•0•4•Updated Dec 2, 2024Dec 2, 2024
dbmisvc-starter
Public
Python
•0•1•0•3•Updated Dec 2, 2024Dec 2, 2024
actions
Public
0•0•0•35•Updated Dec 2, 2024Dec 2, 2024
PIC-SURE-Frontend
Public
A frontend for the PIC-SURE API
TypeScript
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Apache License 2.0
•0•1•0•8•Updated Dec 2, 2024Dec 2, 2024
viv
Public
Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Zarr and OME-TIFF.
imaging ome-tiff openmicroscopy gehlenborglab zarr hubmap viv
JavaScript
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MIT License
•46•288•45•14•Updated Dec 1, 2024Dec 1, 2024
vizarr
Public
A minimal Zarr image viewer based on Viv.
jupyter-notebooks gehlenborglab zarr viv imjoy
TypeScript
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MIT License
•18•126•17•10•Updated Dec 1, 2024Dec 1, 2024
picsure-dictionary-etl
Public
Java
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Apache License 2.0
•0•0•0•1•Updated Nov 29, 2024Nov 29, 2024
pic-sure-hpds
Public
Java
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Apache License 2.0
•6•3•0•7•Updated Nov 28, 2024Nov 28, 2024
pic-sure-services
Public
Java
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Apache License 2.0
•0•0•0•1•Updated Nov 28, 2024Nov 28, 2024
gehlenborglab-website
Public
Code for Gehlenborg Lab website.
website gehlenborglab hidivelab
HTML
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MIT License
•38•8•23•23•Updated Nov 27, 2024Nov 27, 2024
avillachlab-jenkins
Public
HCL
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Apache License 2.0
•6•5•0•0•Updated Nov 26, 2024Nov 26, 2024
service-workbench-infrastructure-tools
Public
AWS lambda functions to extend SWB functionality
JavaScript
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Apache License 2.0
•0•2•0•1•Updated Nov 25, 2024Nov 25, 2024
pic-sure-gic-institution-release-control
Public
Apache License 2.0
•0•0•0•0•Updated Nov 25, 2024Nov 25, 2024
pic-sure
Public
PIC-SURE API
Java
•
Apache License 2.0
•3•5•0•6•Updated Nov 25, 2024Nov 25, 2024
ETL-MissionControl-dbgap-submodule
Public
ETL-MissionControl-dbgap-submodule
Shell
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Apache License 2.0
•0•0•0•0•Updated Nov 22, 2024Nov 22, 2024
chromoscope
Public
Interactive multiscale visualization for structural variation in human genomes
TypeScript
•
MIT License
•6•66•32•3•Updated Nov 22, 2024Nov 22, 2024
pic-sure-bdc-infrastructure
Public
HCL
•
Apache License 2.0
•1•5•0•3•Updated Nov 21, 2024Nov 21, 2024
avillachlab-jenkins-bdc-etl
Public
Shell
•
Apache License 2.0
•0•0•0•0•Updated Nov 21, 2024Nov 21, 2024
generate-tiff-offsets
Public
Generate tiff offsets for optimized remote viewing
HTML
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MIT License
•4•1•2•0•Updated Nov 20, 2024Nov 20, 2024