Repositories list

• TRTools

  Public
  Toolkit for genome-wide analysis of tandem repeats

  Python

  •

  MIT License

  •22•56•18•5•Updated Dec 12, 2024Dec 12, 2024

• gymreklab.github.io

  Public
  Lab website and internal lab wiki

  HTML

  •22•0•1•4•Updated Dec 11, 2024Dec 11, 2024

• EnsembleTR

  Public
  Tools for merging Tandem Repeat VCF files

  Python

  •4•27•4•1•Updated Dec 6, 2024Dec 6, 2024

• happler

  Public
  A haplotype-based fine-mapping method

  fine-mapping

  Jupyter Notebook

  •

  MIT License

  •0•3•7•0•Updated Dec 6, 2024Dec 6, 2024

• webstr

  Public
  WebSTR database and web application code

  JavaScript

  •

  MIT License

  •2•7•8•2•Updated Nov 7, 2024Nov 7, 2024

• CITRUS

  Public
  Phenotype simulation tool with flexibility to model complex interactions.

  Python

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Oct 31, 2024Oct 31, 2024

• webSTR-API

  Public
  WebSTR-API: programmatic access to WebSTR, database of Human genome-wide variation in Short Tandem Repeats (STRs)

  Python

  •

  MIT License

  •4•0•0•1•Updated Oct 23, 2024Oct 23, 2024

• core

  Public
  The Gymrek Lab's core python library

  Python

  •

  MIT License

  •0•1•1•1•Updated Sep 7, 2024Sep 7, 2024

• LongTR

  Public
  Tandem repeat genotyping with long reads

  C++

  •

  GNU General Public License v2.0

  •0•27•2•0•Updated Sep 5, 2024Sep 5, 2024

• HipSTR

  Public
  This is a Gymrek lab version HipSTR.

  C

  •

  GNU General Public License v2.0

  •1•2•2•0•Updated Jun 4, 2024Jun 4, 2024

• CAHMML

  Public
  Custom Lambda HMM Library

  Python

  •

  MIT License

  •0•6•0•0•Updated May 4, 2023May 4, 2023

• .github

  Public
  MIT License

  •0•1•0•0•Updated Mar 16, 2022Mar 16, 2022