Repositories list

• umi-pipeline-nf

  Public
  Nextflow pipeline to analyze ONT UMI Sequencing data

  Python

  •

  Mozilla Public License 2.0

  •1•3•6•0•Updated Dec 4, 2024Dec 4, 2024

• cloudgene3

  Public
  A framework to build Software As A Service (SaaS) platforms for Nextflow pipelines.

  Java

  •

  MIT License

  •2•11•0•0•Updated Nov 22, 2024Nov 22, 2024

• pre-imputation-qc

  Public
  Prepare your data for Genotype Imputation

  Nextflow

  •

  MIT License

  •0•0•0•1•Updated Nov 22, 2024Nov 22, 2024

• imputationserver2

  Public
  Nextflow

  •

  MIT License

  •3•11•5•1•Updated Oct 21, 2024Oct 21, 2024

• imputationserver-utils

  Public
  Java

  •

  MIT License

  •1•1•0•0•Updated Oct 4, 2024Oct 4, 2024

• imputationserver

  Public
  Michigan Imputation Server: A new web-based service for imputation that facilitates access to new reference panels and greatly improves user experience and productivity

  gwasimputationminimac4+ 1software-as-a-service

  Java

  •

  GNU Affero General Public License v3.0

  •43•79•46•0•Updated Sep 28, 2024Sep 28, 2024

• michigan-imputationserver

  Public
  MIT License

  •0•0•0•0•Updated Sep 24, 2024Sep 24, 2024

• mtdna-server-2

  Public
  mtDNA-Server 2: A web-service and Nextflow pipeline for mitochondrial genomes

  Nextflow

  •

  MIT License

  •0•9•2•0•Updated Sep 10, 2024Sep 10, 2024

• haplogrep3

  Public
  Free mtDNA Haplogroup Classification Service

  Java

  •

  MIT License

  •2•23•8•1•Updated Aug 16, 2024Aug 16, 2024

• ngs-class

  Public
  Next Gen Sequencing Course - Medical University of Innsbruck

  Nextflow

  •1•2•0•0•Updated Aug 7, 2024Aug 7, 2024

• cloudgene-website

  Public
  Cloudgene Website

  HTML

  •0•0•0•0•Updated Aug 1, 2024Aug 1, 2024

• microarray-eval-nf

  Public
  Nextflow

  •0•0•0•0•Updated Jul 17, 2024Jul 17, 2024

• cloudgene3-installer

  Public
  Shell

  •0•0•0•0•Updated Jul 15, 2024Jul 15, 2024

• nf-gwas

  Public
  A nextflow pipeline to perform state-of-the-art genome-wide association studies.

  gwasnextflowslurm+ 3singularityimputationregenie

  Nextflow

  •

  MIT License

  •21•63•8•0•Updated May 29, 2024May 29, 2024

• cloudgene

  Public
  A framework to build Software As A Service (SaaS) platforms for data analysis pipelines.

  dockerhadoopanalysis-pipeline+ 2cloudgenecloudgene-saas

  Java

  •

  GNU Affero General Public License v3.0

  •19•37•22•6•Updated Apr 19, 2024Apr 19, 2024

• vntr-calling-nf

  Public
  HTML

  •

  MIT License

  •2•2•1•0•Updated Apr 2, 2024Apr 2, 2024

• genomic-utils

  Public
  Collection of tools to work with genomic datasets

  Java

  •

  MIT License

  •1•2•1•0•Updated Mar 28, 2024Mar 28, 2024

• mitoverse

  Public
  Documentation for the Mitoverse Platform

  HTML

  •0•1•0•0•Updated Mar 20, 2024Mar 20, 2024

• r-repo-test

  Public
  A R test repo

  MIT License

  •0•0•0•0•Updated Mar 20, 2024Mar 20, 2024

• imputationserver-ashg

  Public
  Michigan Imputation Server Workshop

  HTML

  •0•0•0•0•Updated Nov 2, 2023Nov 2, 2023

• cloudgene-installer

  Public
  Cloudgene Installation script.

  Shell

  •1•0•0•0•Updated Sep 20, 2023Sep 20, 2023

• haplocheck

  Public
  Phylogeny-based Contamination Detection in Mitochondrial and Whole-Genome Sequencing Studies

  HTML

  •

  MIT License

  •2•16•4•1•Updated Jun 14, 2023Jun 14, 2023

• mt-c1

  Public
  Functionally relevant mutation sites in the human mitochondrial respiratory complex 1 (MT-C1)

  HTML

  •0•0•0•0•Updated May 16, 2023May 16, 2023

• cloudgene-sdk

  Public
  SDKs for Cloudgene

  Java

  •0•0•0•1•Updated May 14, 2023May 14, 2023

• haplogrep-core

  Public
  haplogrep-core

  Java

  •

  Apache License 2.0

  •0•0•1•0•Updated Apr 27, 2023Apr 27, 2023

• haplogrep-trees

  Public
  HTML

  •

  MIT License

  •0•1•0•0•Updated Mar 29, 2023Mar 29, 2023

• phylotree-fu-rcrs

  Public
  HTML

  •

  MIT License

  •0•2•0•0•Updated Mar 29, 2023Mar 29, 2023

• phylotree-rcrs-17

  Public
  HTML

  •

  MIT License

  •0•3•0•0•Updated Mar 29, 2023Mar 29, 2023

• phylotree-rsrs-17

  Public
  Makefile

  •

  MIT License

  •0•0•0•0•Updated Feb 28, 2023Feb 28, 2023

• phylotree-rcrs-16

  Public
  Makefile

  •

  MIT License

  •0•0•0•0•Updated Dec 19, 2022Dec 19, 2022