diff --git a/Makefile b/Makefile index a85672a..fca58f9 100644 --- a/Makefile +++ b/Makefile @@ -53,16 +53,3 @@ build-genetics-etl-image: build-whl ## build local genetics-etl image for the te --tag genetics_etl:test \ -f images/genetics_etl/Dockerfile \ --build-arg DIST=$(shell find dist -name 'ot_orchestration*') - -test-gwas-catalog-batch-script: ## test harmonisation task - mkdir -p test_batch - gsutil -m rsync -r gs://ot_orchestration/tests/gwas_catalog/basic_test/GCST004600 test_batch - docker run \ - -v $(HOME)/.config/gcloud:/root/.config/gcloud \ - -e MANIFEST_PATH=gs://ot_orchestration/tests/gwas_catalog/basic_test/GCST004600/manifest.json \ - -e GOOGLE_APPLICATION_CREDENTIALS=/root/.config/gcloud/service_account_credentials.json \ - -ti \ - --rm \ - genetics_etl:test \ - -c "ot gwas-catalog-process-in-batch" - gsutil -m rsync -r test_batch gs://ot_orchestration/tests/gwas_catalog/basic_test/GCST004600