Merge pull request #241 from bgilbert/toml #211
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Python | |
| on: | |
| push: | |
| branches: [main] | |
| tags: ["*"] | |
| pull_request: | |
| branches: [main] | |
| permissions: | |
| contents: read | |
| env: | |
| PYTHONUNBUFFERED: 1 | |
| jobs: | |
| pre-commit: | |
| name: Rerun pre-commit checks | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.12' | |
| - uses: pre-commit/[email protected] | |
| tests: | |
| name: Tests | |
| needs: pre-commit | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest, macos-latest] | |
| python-version: [3.8, 3.9, "3.10", "3.11", "3.12"] | |
| include: | |
| - os: ubuntu-latest | |
| python-version: "3.12" | |
| sdist: sdist | |
| # Python 3.8 is too old to support universal binaries, and | |
| # setup-python's Python 3.9 and 3.10 won't build them. Use the | |
| # last upstream patch releases that ship with installers. | |
| # https://github.com/actions/setup-python/issues/439#issuecomment-1247646682 | |
| - os: macos-latest | |
| python-version: "3.9" | |
| upstream-python: 3.9.13 | |
| - os: macos-latest | |
| python-version: "3.10" | |
| upstream-python: 3.10.11 | |
| steps: | |
| - name: Check out repo | |
| uses: actions/checkout@v4 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| if: matrix.upstream-python == null | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Set up Python ${{ matrix.python-version }} (macOS fallback) | |
| if: matrix.upstream-python != null | |
| run: | | |
| pkgdir="${{ runner.temp }}/python" | |
| mkdir -p "$pkgdir/bin" | |
| pkg="$pkgdir/python.pkg" | |
| curl -Lfo "$pkg" \ | |
| "https://www.python.org/ftp/python/${{ matrix.upstream-python }}/python-${{ matrix.upstream-python }}-macos11.pkg" | |
| sudo installer -pkg "$pkg" -target / | |
| for bin in python pip; do | |
| ln -s /usr/local/bin/${bin}3 $pkgdir/bin/${bin} | |
| done | |
| export PATH="$pkgdir/bin:$PATH" | |
| echo "PATH=$PATH" >> $GITHUB_ENV | |
| python -V | |
| pip -V | |
| - name: Install Python tools | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install auditwheel build jinja2 pytest setuptools | |
| - name: Install OpenSlide | |
| run: | | |
| case "${{ matrix.os }}" in | |
| ubuntu-latest) | |
| sudo apt-get install libopenslide0 | |
| ;; | |
| macos-latest) | |
| brew install openslide | |
| ;; | |
| esac | |
| - name: Build wheel | |
| run: | | |
| if [ -z "${{ matrix.sdist }}" ]; then | |
| wheel_only=-w | |
| fi | |
| python -m build $wheel_only | |
| case "${{ matrix.os }}" in | |
| ubuntu-*) | |
| mkdir old | |
| mv dist/*.whl old/ | |
| auditwheel repair --only-plat -w dist old/*whl | |
| ;; | |
| macos-*) | |
| if [ "${{ matrix.python-version }}" != 3.8 -a ! -e dist/*universal2* ]; then | |
| echo "Wheel is not universal:" | |
| ls dist | |
| exit 1 | |
| fi | |
| esac | |
| basename=openslide-python-wheels-$GITHUB_RUN_NUMBER-$(echo $GITHUB_SHA | cut -c-10) | |
| mkdir -p "artifacts/${basename}" | |
| mv dist/* "artifacts/${basename}" | |
| echo "basename=${basename}" >> $GITHUB_ENV | |
| # save version-specific wheels and oldest abi3 wheel | |
| python -c 'import sys | |
| if sys.version_info < (3, 12): print("archive_wheel=1")' >> $GITHUB_ENV | |
| - name: Install | |
| run: pip install artifacts/${basename}/*.whl | |
| - name: Run tests | |
| run: pytest -v | |
| - name: Tile slide | |
| run: python examples/deepzoom/deepzoom_tile.py --viewer -o tiled tests/fixtures/small.svs | |
| - name: Archive wheel | |
| if: env.archive_wheel | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: ${{ env.basename }} | |
| path: artifacts | |
| windows: | |
| name: Windows | |
| needs: pre-commit | |
| runs-on: windows-latest | |
| env: | |
| BIN_RELEASE: 20231011 | |
| defaults: | |
| run: | |
| shell: bash | |
| strategy: | |
| matrix: | |
| python-version: [3.8, 3.9, "3.10", "3.11", "3.12"] | |
| steps: | |
| - name: Check out repo | |
| uses: actions/checkout@v4 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install Python tools | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install build flask pytest | |
| - name: Install OpenSlide | |
| run: | | |
| mkdir -p c:\\openslide | |
| cd c:\\openslide | |
| zipname=openslide-win64-${BIN_RELEASE} | |
| curl -LfO "https://github.com/openslide/openslide-bin/releases/download/v${BIN_RELEASE}/${zipname}.zip" | |
| 7z x ${zipname}.zip | |
| echo "OPENSLIDE_PATH=c:\\openslide\\${zipname}\\bin" >> $GITHUB_ENV | |
| - name: Build wheel | |
| run: | | |
| python -m build -w | |
| basename=openslide-python-wheels-$GITHUB_RUN_NUMBER-$(echo $GITHUB_SHA | cut -c-10) | |
| mkdir -p "artifacts/${basename}" | |
| mv dist/*.whl "artifacts/${basename}" | |
| echo "basename=${basename}" >> $GITHUB_ENV | |
| # save version-specific wheels and oldest abi3 wheel | |
| python -c 'import sys | |
| if sys.version_info < (3, 12): print("archive_wheel=1")' >> $GITHUB_ENV | |
| - name: Install | |
| run: pip install artifacts/${basename}/*.whl | |
| - name: Run tests | |
| # Reads OPENSLIDE_PATH | |
| run: pytest -v | |
| - name: Test library loading in examples | |
| # Reads OPENSLIDE_PATH | |
| run: | | |
| python examples/deepzoom/deepzoom_multiserver.py -h >/dev/null | |
| python examples/deepzoom/deepzoom_server.py -h >/dev/null | |
| python examples/deepzoom/deepzoom_tile.py -h >/dev/null | |
| - name: Tile slide | |
| # Reads OPENSLIDE_PATH | |
| run: python examples/deepzoom/deepzoom_tile.py --viewer -o tiled tests/fixtures/small.svs | |
| - name: Archive wheel | |
| if: env.archive_wheel | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: ${{ env.basename }} | |
| path: artifacts | |
| docs: | |
| name: Docs | |
| needs: pre-commit | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Check out repo | |
| uses: actions/checkout@v4 | |
| - name: Set up Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.12' | |
| - name: Install Python tools | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install sphinx | |
| - name: Build | |
| run: | | |
| basename=openslide-python-docs-$GITHUB_RUN_NUMBER-$(echo $GITHUB_SHA | cut -c-10) | |
| sphinx-build -d doctrees doc artifact/${basename} | |
| echo "basename=${basename}" >> $GITHUB_ENV | |
| - name: Archive | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: ${{ env.basename }} | |
| path: artifact |