Switch to PEP 621 project metadata; build sdist and all wheels in CI #200
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name: Python | |
on: | |
push: | |
branches: [main] | |
tags: ["*"] | |
pull_request: | |
branches: [main] | |
permissions: | |
contents: read | |
env: | |
PYTHONUNBUFFERED: 1 | |
jobs: | |
pre-commit: | |
name: Rerun pre-commit checks | |
runs-on: ubuntu-latest | |
steps: | |
- uses: actions/checkout@v4 | |
- uses: actions/setup-python@v4 | |
with: | |
python-version: '3.12' | |
- uses: pre-commit/[email protected] | |
tests: | |
name: Tests | |
needs: pre-commit | |
runs-on: ${{ matrix.os }} | |
strategy: | |
matrix: | |
os: [ubuntu-latest, macos-latest] | |
python-version: [3.8, 3.9, "3.10", "3.11", "3.12"] | |
include: | |
- os: ubuntu-latest | |
python-version: "3.12" | |
sdist: sdist | |
# Python 3.8 is too old to support universal binaries, and | |
# setup-python's Python 3.9 and 3.10 won't build them. Use the | |
# last upstream patch releases that ship with installers. | |
# https://github.com/actions/setup-python/issues/439#issuecomment-1247646682 | |
- os: macos-latest | |
python-version: "3.9" | |
upstream-python: 3.9.13 | |
- os: macos-latest | |
python-version: "3.10" | |
upstream-python: 3.10.11 | |
steps: | |
- name: Check out repo | |
uses: actions/checkout@v4 | |
- name: Set up Python ${{ matrix.python-version }} | |
if: matrix.upstream-python == null | |
uses: actions/setup-python@v4 | |
with: | |
python-version: ${{ matrix.python-version }} | |
- name: Set up Python ${{ matrix.python-version }} (macOS fallback) | |
if: matrix.upstream-python != null | |
run: | | |
pkgdir="${{ runner.temp }}/python" | |
mkdir -p "$pkgdir/bin" | |
pkg="$pkgdir/python.pkg" | |
curl -Lfo "$pkg" \ | |
"https://www.python.org/ftp/python/${{ matrix.upstream-python }}/python-${{ matrix.upstream-python }}-macos11.pkg" | |
sudo installer -pkg "$pkg" -target / | |
for bin in python pip; do | |
ln -s /usr/local/bin/${bin}3 $pkgdir/bin/${bin} | |
done | |
export PATH="$pkgdir/bin:$PATH" | |
echo "PATH=$PATH" >> $GITHUB_ENV | |
python -V | |
pip -V | |
- name: Install Python tools | |
run: | | |
python -m pip install --upgrade pip | |
pip install auditwheel build jinja2 pytest setuptools | |
- name: Install OpenSlide | |
run: | | |
case "${{ matrix.os }}" in | |
ubuntu-latest) | |
sudo apt-get install libopenslide0 | |
;; | |
macos-latest) | |
brew install openslide | |
;; | |
esac | |
- name: Build wheel | |
run: | | |
if [ -z "${{ matrix.sdist }}" ]; then | |
wheel_only=-w | |
fi | |
python -m build $wheel_only | |
case "${{ matrix.os }}" in | |
ubuntu-*) | |
mkdir old | |
mv dist/*.whl old/ | |
auditwheel repair --only-plat -w dist old/*whl | |
;; | |
macos-*) | |
if [ "${{ matrix.python-version }}" != 3.8 -a ! -e dist/*universal2* ]; then | |
echo "Wheel is not universal:" | |
ls dist | |
exit 1 | |
fi | |
esac | |
basename=openslide-python-wheels-$GITHUB_RUN_NUMBER-$(echo $GITHUB_SHA | cut -c-10) | |
mkdir -p "artifacts/${basename}" | |
mv dist/* "artifacts/${basename}" | |
echo "basename=${basename}" >> $GITHUB_ENV | |
- name: Install | |
run: pip install artifacts/${basename}/*.whl | |
- name: Run tests | |
run: pytest -v | |
- name: Tile slide | |
run: python examples/deepzoom/deepzoom_tile.py --viewer -o tiled tests/fixtures/small.svs | |
- name: Archive wheel | |
uses: actions/upload-artifact@v3 | |
with: | |
name: ${{ env.basename }} | |
path: artifacts | |
windows: | |
name: Windows | |
needs: pre-commit | |
runs-on: windows-latest | |
env: | |
BIN_RELEASE: 20231011 | |
defaults: | |
run: | |
shell: bash | |
strategy: | |
matrix: | |
python-version: [3.8, 3.9, "3.10", "3.11", "3.12"] | |
steps: | |
- name: Check out repo | |
uses: actions/checkout@v4 | |
- name: Set up Python ${{ matrix.python-version }} | |
uses: actions/setup-python@v4 | |
with: | |
python-version: ${{ matrix.python-version }} | |
- name: Install Python tools | |
run: | | |
python -m pip install --upgrade pip | |
pip install build flask pytest | |
- name: Install OpenSlide | |
run: | | |
mkdir -p c:\\openslide | |
cd c:\\openslide | |
zipname=openslide-win64-${BIN_RELEASE} | |
curl -LfO "https://github.com/openslide/openslide-bin/releases/download/v${BIN_RELEASE}/${zipname}.zip" | |
7z x ${zipname}.zip | |
echo "OPENSLIDE_PATH=c:\\openslide\\${zipname}\\bin" >> $GITHUB_ENV | |
- name: Build wheel | |
run: | | |
python -m build -w | |
basename=openslide-python-wheels-$GITHUB_RUN_NUMBER-$(echo $GITHUB_SHA | cut -c-10) | |
mkdir -p "artifacts/${basename}" | |
mv dist/*.whl "artifacts/${basename}" | |
echo "basename=${basename}" >> $GITHUB_ENV | |
- name: Install | |
run: pip install artifacts/${basename}/*.whl | |
- name: Run tests | |
# Reads OPENSLIDE_PATH | |
run: pytest -v | |
- name: Test library loading in examples | |
# Reads OPENSLIDE_PATH | |
run: | | |
python examples/deepzoom/deepzoom_multiserver.py -h >/dev/null | |
python examples/deepzoom/deepzoom_server.py -h >/dev/null | |
python examples/deepzoom/deepzoom_tile.py -h >/dev/null | |
- name: Tile slide | |
# Reads OPENSLIDE_PATH | |
run: python examples/deepzoom/deepzoom_tile.py --viewer -o tiled tests/fixtures/small.svs | |
- name: Archive wheel | |
uses: actions/upload-artifact@v3 | |
with: | |
name: ${{ env.basename }} | |
path: artifacts | |
docs: | |
name: Docs | |
needs: pre-commit | |
runs-on: ubuntu-latest | |
steps: | |
- name: Check out repo | |
uses: actions/checkout@v4 | |
- name: Set up Python | |
uses: actions/setup-python@v4 | |
with: | |
python-version: '3.12' | |
- name: Install Python tools | |
run: | | |
python -m pip install --upgrade pip | |
pip install sphinx | |
- name: Build | |
run: | | |
basename=openslide-python-docs-$GITHUB_RUN_NUMBER-$(echo $GITHUB_SHA | cut -c-10) | |
sphinx-build -d doctrees doc artifact/${basename} | |
echo "basename=${basename}" >> $GITHUB_ENV | |
- name: Archive | |
uses: actions/upload-artifact@v3 | |
with: | |
name: ${{ env.basename }} | |
path: artifact |